TCONS_00011887-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011887-protein
Unique NameTCONS_00011887-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011887-protein ID=TCONS_00011887-protein|Name=TCONS_00011887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
MAARFPEESTLEDLYHQQQHLXARFPEESTLEDLYHQQQHLTNSDEGYDV
TFADEQLDTNDMTCVICLFILREPHQAVPCGHRFCCGCIDKVRQQKGEKA
PLLCPIDRLEITATFPDAGRKREILNLEVKCTNIESNSPSTICNWVGELR
KLQEHVEKQCDNTLIHCHLQCGVKVYRSNANFHLQNDCPKNLKDCKYSII
GCPFKGNDERLSTHLSTGFDHHLFLQVLRQSEDIDAKNKSLDEMEIKFRT
QVQDMEKRMIAQSKQMKNSFQKQIAELKQEHETKTDQMMAQSKSQEEIIK
TLQNDVTEKSKRISSLEIFSVAPKCPFAYVIDNATEELQNARERNTILYS
DSFYCLHGYKARLKIHLDGITGVPVTKGTHLAVYFQLLQGPFDDKLQWPM
PFGFITLSLSINEGPKAIAKQKILRHTESDEVRQYFVKPVKRAGVHRGFR
KFLALKELPEVIDNDKIKFEIDVTPC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006672XLOC_006672Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011887TCONS_00011887Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001293Znf_TRAF
IPR018957Znf_C3HC4_RING-type
IPR008974TRAF-like
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR002083MATH/TRAF_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 260..287
NoneNo IPR availableCOILSCoilCoilcoord: 331..351
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 55..114
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 64..107
e-value: 0.0027
score: 27.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 64..108
score: 11.28
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 63..106
e-value: 1.47688E-7
score: 47.4404
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 157..214
e-value: 8.1E-8
score: 32.7
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 155..202
score: 11.541
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 64..105
e-value: 1.3E-6
score: 28.1
IPR008974TRAF-likeGENE3D2.60.210.10coord: 303..475
e-value: 2.7E-15
score: 56.2
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 127..231
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 329..475
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 176..215
e-value: 2.1E-6
score: 27.4
coord: 124..175
e-value: 2.5E-8
score: 33.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 46..123
e-value: 4.3E-10
score: 38.4
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 80..89
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 324..473
score: 10.598

Blast
[Close]
BLAST of TCONS_00011887-protein vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.015e-21
Identity = 120/477 (25.16%), Postives = 207/477 (43.40%), Query Frame = 0 
Query:   46 EGYDVTFADEQLDTNDMTCVICLFILREPHQAVPCGHRFCCGCIDKVRQQKGEKAPLLCPIDR--LEITATFPDAGRKREILNLEVKCTNIESNSPSTICNWVGELRKLQEHVEKQCDNTLIHCHLQCGVKVYRSNANFHLQNDCPKNLKDCKYSIIGCPFKGNDER-----LSTHLSTGFDHHLFLQVLRQSEDIDAKNKSLDEMEIKF----RTQVQDMEK----------RMIAQS-------------KQMKNSFQKQIAEL-----KQEHETKTDQMMAQSKSQEEIIKTLQNDVTEKSKRISSLEIFSVAPKCPFAYV--IDNATEELQ-NARERNTILYSDSFYCLH-GYKARLKIHLDGITGVPVTK--GTHLAVYFQLLQGPFDDKLQWPMPFGFITLSLSINEGPKAIAKQKILRHTESDEVRQYFVKP-VKRAGVHRGFRKFLALKELPE--VIDNDKIKFEIDVT 474
            +GYDV F D  L++    C ICL  LRE  Q  PCGHRFC  CI K  +  G K    CP+D   L     FPD   KREIL+L VKC       P+  C    ELR L++H +  C+  L+ C  QC     + + N H+  DCP+    C        F+  +       L+  +    +  L  + +    D+D     +      F    + Q   + +          RM+AQ+              +++N FQ+ I +L     +Q+H+ +  ++ A+ ++Q   +  L+  +     +++ +E    A +C   Y+  I N    L+    E+  +++S  FY    GYK  +++HL     +P  +    +++++   +QG +D  L WP      T+ L+I +  +A  +Q      ++      F +P + R     G+  F+ L+ L +   I +D +    +V+
Sbjct:   54 QGYDVEF-DPPLESK-YECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHK----CPVDNEILLENQLFPDNFAKREILSLMVKC-------PNEGCLHKMELRHLEDH-QAHCEFALMDCP-QCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRN-FQETIHQLEGRLVRQDHQIR--ELTAKMETQSMYVSELKRTIRTLEDKVAEIE----AQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQ----LPTAQRCANYISLFVHTMQGEYDSHLPWPFQG---TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVS 500
The following BLAST results are available for this feature:
BLAST of TCONS_00011887-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF61.015e-2125.16TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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