TCONS_00011476-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011476-protein
Unique NameTCONS_00011476-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length388

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011476-protein ID=TCONS_00011476-protein|Name=TCONS_00011476-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
VDQDGIGNVCDNCPSNANPLQRDIDGDSYGDFCDVDNDNDGVVNGFDNCP
FVKNEQQWDGDGDGIGDLCDNCPSVPNNDQLDVDLNGVGDVCDNQNDRDY
DGIADGRDNCPYFPNAAQVDTDGDNIGDTCDTDDDNDGFVDQADNCPLMH
NLLQFDIDDNQRGDVCEYDYDDDGYDSRVDSCPLNNAIWRTSFLKHRTIL
LNNPREPANLLWKIHDKGQEVELNSYINGSVVLLGDDLYEGFDFNGVIHI
LQQEGKVMNTFYEVGIAFDYQSLKKYYLLSLQNINGLKRVAVYVSRNNGR
NPANEKVLKWSSPFDWQPGSSYNLKIHRRPLTNQLRIQVKGVDGGATVDS
GVLEVDQQKGGKIGLYATYTKNVIWSSLTIECNESKIE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006431XLOC_006431Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011476TCONS_00011476Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028974TSP_type-3_rpt
IPR003367Thrombospondin_3-like_rpt
IPR008859Thrombospondin_C
IPR017897Thrombospondin_3_rpt
IPR013320ConA-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
cellular_component GO:0005576 extracellular region
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028974TSP type-3 repeatGENE3D4.10.1080.10coord: 1..71
e-value: 4.2E-18
score: 64.9
coord: 72..193
e-value: 5.3E-26
score: 90.5
IPR028974TSP type-3 repeatSUPERFAMILY103647TSP type-3 repeatcoord: 2..70
IPR028974TSP type-3 repeatSUPERFAMILY103647TSP type-3 repeatcoord: 68..189
NoneNo IPR availableGENE3D2.60.120.200coord: 196..300
e-value: 5.0E-4
score: 19.4
coord: 301..384
e-value: 2.4E-7
score: 30.2
IPR003367Thrombospondin, type 3-like repeatPFAMPF02412TSP_3coord: 22..57
e-value: 4.5E-9
score: 35.7
coord: 156..185
e-value: 1.7E-6
score: 27.5
coord: 1..21
e-value: 2.0E-4
score: 20.9
coord: 59..80
e-value: 1.9E-4
score: 20.9
coord: 82..118
e-value: 1.3E-9
score: 37.4
coord: 120..151
e-value: 5.1E-9
score: 35.6
IPR008859Thrombospondin, C-terminalPFAMPF05735TSP_Ccoord: 314..384
e-value: 2.5E-9
score: 37.3
IPR008859Thrombospondin, C-terminalPROSITEPS51236TSP_CTERcoord: 194..387
score: 14.711
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 81..118
score: 14.482
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 58..80
score: 11.818
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 155..190
score: 11.113
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 1..21
score: 10.985
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 22..57
score: 14.439
IPR017897Thrombospondin, type 3 repeatPROSITEPS51234TSP3coord: 119..154
score: 15.23
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 194..384

Blast
[Close]
BLAST of TCONS_00011476-protein vs. Swiss-Prot (Human)
Match: TSP3 (Thrombospondin-3 OS=Homo sapiens GN=THBS3 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.723e-54
Identity = 150/421 (35.63%), Postives = 218/421 (51.78%), Query Frame = 0 
Query:    2 DQDGIGNVCDNCPSNANPLQRDIDGDSYGDFCDVDNDNDGVVNGFDNCPFVKNEQQWDGDGDGIGDLCDNCPSVPNNDQLDVDLNGVGDVCDNQNDRDYDGIADGRDNCPYFPNAAQVDTDGDNIGDTCDTDDDNDGFVDQA----DNCPLMHNLLQFDIDDNQRGDVCEYDYDDDGYDSRVDSCPLNNAIWRTSFLKHRTILLNNPREPANL--LWKIHDKGQEVELNSYINGSVVLLGDDLYEGFDFNGVIHILQQEGKVMNTFYEVGIAFDYQSLKKYYLLSLQNIN---------------GLKRVAVYVSRNNGRNPAN----------EKVLKWSSP--FDWQPGSSYNLKIHRRPLTNQLRIQVKGVDGGATV-DSGVLEVDQQKGGKIGLYATYTKNVIWSSLTIECNESKIE 388
            D D  G+ CDNCP+  N  Q+D DG+  GD CD D D DG+ NG DNCP V N  Q D D DG+GD CD+CP + N  Q D D + VGDVCD   D D DG  D +DNCP  PN++Q+D+D D +GD CD DDDNDG  D      DNC L+ N  Q D D N  GDVCE D+D+D     +D CP +  +  T F  ++T++L +P   A +   W + ++G E+ + +  +   + +G   + G DF G  H+      V +  Y  G  F YQ   ++Y++  +                  GL+  AV      G +  N          +  L W+ P    W+  +SY  ++  RP    +R+++   +G   V DSGV+     +GG++G++    +N+IWS+L   CN++  E
Sbjct:  531 DTDSFGDACDNCPNVPNNDQKDTDGNGEGDACDNDVDGDGIPNGLDNCPKVPNPLQTDRDEDGVGDACDSCPEMSNPTQTDADSDLVGDVCDTNEDSDGDGHQDTKDNCPQLPNSSQLDSDNDGLGDECDGDDDNDGIPDYVPPGPDNCRLVPNPNQKDSDGNGVGDVCEDDFDNDAVVDPLDVCPESAEVTLTDFRAYQTVVL-DPEGDAQIDPNWVVLNQGMEI-VQTMNSDPGLAVGYTAFNGVDFEGTFHV----NTVTDDDY-AGFLFSYQDSGRFYVVMWKQTEQTYWQATPFRAVAQPGLQLKAVTSVSGPGEHLRNALWHTGHTPDQVRLLWTDPRNVGWRDKTSYRWQLLHRPQVGYIRVKL--YEGPQLVADSGVIIDTSMRGGRLGVFCFSQENIIWSNLQYRCNDTVPE 942
The following BLAST results are available for this feature:
BLAST of TCONS_00011476-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSP31.723e-5435.63Thrombospondin-3 OS=Homo sapiens GN=THBS3 PE=1 SV=... [more]
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