TCONS_00026592 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026592
Unique NameTCONS_00026592
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026592 ID=TCONS_00026592|Name=TCONS_00026592|organism=Clytia hemisphaerica|type=transcript|length=565bp
GCTTTCGAATCTTCAGTGATTCATTGTCAAGGTCTTGTTTGGTAGCAAGT
TTTTCATACACAGCACGTTTATCAAGATTATCAATTTCAAGTCTCGCAAT
ATTTTTCTCAAGTTTTGATATGGTTAAGCTCTGTTGCTCAATATTCGATT
GATACGATGACTTTTCAGAcagtattttattttcaagtctCGCAATATCC
TGCTCTTGTTGCAATACGGTCATTCTAAGTTCTTCAATTTGTGATTGATG
TTCCAGAAAGAAGTTAACATAAACAGCGATGCCGACGCTCAACAAAACGA
AAATCACAacattggaaaatattttacacTTTCTTGGTCGGACATTCAGG
TTTTGCTGCATTCGAAGTTGAGCCTGGACATTTGCAAGTTGATTTTGTAT
CAGCTGCACCTGACCAACTAAATCCAGTGCCTCGTTTTGGGCGTCATTTC
TTTGTTGAGCATTATTCCCACCATCTACAATGTTAGCATGGTTCTCAGCT
CTTGGATTCATCACAGCTTGATTATCTCCAAGCTTTCTATCCTGATTGTT
GTTCGCACATTGTGC
Run BLAST on NCBI

protein sequence of TCONS_00026592-protein

>TCONS_00026592-protein ID=TCONS_00026592-protein|Name=TCONS_00026592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
AQCANNNQDRKLGDNQAVMNPRAENHANIVDGGNNAQQRNDAQNEALDLV
GQVQLIQNQLANVQAQLRMQQNLNVRPRKCKIFSNVVIFVLLSVGIAVYV
NFFLEHQSQIEELRMTVLQQEQDIARLENKILSEKSSYQSNIEQQSLTIS
KLEKNIARLEIDNLDKRAVYEKLATKQDLDNESLKIRK
Run BLAST on NCBI

transcript from alignment at sc0000575:123380..123944

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026592 ID=TCONS_00026592|Name=TCONS_00026592|organism=Clytia hemisphaerica|type=transcript|length=565bp|location=Sequence derived from alignment at sc0000575:123380..123944 (Clytia hemisphaerica)
GCACAATGTGCGAACAACAATCAGGATAGAAAGCTTGGAGATAATCAAGC
TGTGATGAATCCAAGAGCTGAGAACCATGCTAACATTGTAGATGGTGGGA
ATAATGCTCAACAAAGAAATGACGCCCAAAACGAGGCACTGGATTTAGTT
GGTCAGGTGCAGCTGATACAAAATCAACTTGCAAATGTCCAGGCTCAACT
TCGAATGCAGCAAAACCTGAATGTCCGACCAAGAAAgtgtaaaatatttt
ccaatgtTGTGATTTTCGTTTTGTTGAGCGTCGGCATCGCTGTTTATGTT
AACTTCTTTCTGGAACATCAATCACAAATTGAAGAACTTAGAATGACCGT
ATTGCAACAAGAGCAGGATATTGCGagacttgaaaataaaatactgTCTG
AAAAGTCATCGTATCAATCGAATATTGAGCAACAGAGCTTAACCATATCA
AAACTTGAGAAAAATATTGCGAGACTTGAAATTGATAATCTTGATAAACG
TGCTGTGTATGAAAAACTTGCTACCAAACAAGACCTTGACAATGAATCAC
TGAAGATTCGAAAGC

Coding sequence (CDS) from alignment at sc0000575:123380..123944

>TCONS_00026592 ID=TCONS_00026592|Name=TCONS_00026592|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0000575:123380..123944 (Clytia hemisphaerica)
GCACAATGTGCGAACAACAATCAGGATAGAAAGCTTGGAGATAATCAAGC
TGTGATGAATCCAAGAGCTGAGAACCATGCTAACATTGTAGATGGTGGGA
ATAATGCTCAACAAAGAAATGACGCCCAAAACGAGGCACTGGATTTAGTT
GGTCAGGTGCAGCTGATACAAAATCAACTTGCAAATGTCCAGGCTCAACT
TCGAATGCAGCAAAACCTGAATGTCCGACCAAGAAAgtgtaaaatatttt
ccaatgtTGTGATTTTCGTTTTGTTGAGCGTCGGCATCGCTGTTTATGTT
AACTTCTTTCTGGAACATCAATCACAAATTGAAGAACTTAGAATGACCGT
ATTGCAACAAGAGCAGGATATTGCGagacttgaaaataaaatactgTCTG
AAAAGTCATCGTATCAATCGAATATTGAGCAACAGAGCTTAACCATATCA
AAACTTGAGAAAAATATTGCGAGACTTGAAATTGATAATCTTGATAAACG
TGCTGTGTATGAAAAACTTGCTACCAAACAAGACCTTGACAATGAATCAC
TGAAGATTCGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014953XLOC_014953Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026592-exon-sc0000575-1491911889:123380..123944TCONS_00026592-exon-sc0000575-1491911889:123380..123944Clytia hemisphaericaexon
TCONS_00026592-exon-sc0000575-1510915933:123380..123944TCONS_00026592-exon-sc0000575-1510915933:123380..123944Clytia hemisphaericaexon
TCONS_00026592-exon-sc0000575-1575043694:123380..123944TCONS_00026592-exon-sc0000575-1575043694:123380..123944Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026592-proteinTCONS_00026592-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000575supercontigsc0000575:123380..123944 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.128124	0.359845	0	0.416085	0.706758	0.0663707	3.77787	2.20259	0	0	0	0	0	0.221711	0	0	0	0	0.213994	0.572953	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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