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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026579 ID=TCONS_00026579|Name=TCONS_00026579|organism=Clytia hemisphaerica|type=transcript|length=1819bp
TTTCTTTGACGTTGTGGGCTGACTTCTGGTAATGCGTAGATAGGTTCCTC
TTTAAATGCATCAGGTGAGGGTTCAGAAGAAATtccactgtcagataaca
cggATGCTCCCCTTgaaattgttttctttgtaCTGATAACGGGTTCATAC
AAAGGGTTACCATTCTCATCAAGAAGATCTGAGCTTTGAACAAAGACATC
AGCTTCACCCTCCTGAATCGTTGTAGCCCCCAACTGTAGGTCTGCTGCCC
CCGTCCACCCGCTATATGGTAGCGGGACCGGTGGTCTGTCCGATGATGAT
TCCCTGCttgcagattttttatttttaacaacTGGTGCGTAAAGAGGGTC
ACCATTGTCGTCTAGAAGTTCCGGGGTGTCAGGTCTGGAGAGACTTTCCT
TGCTCGGCTTTGGGGTGACAGGCGGAGGGCGTAGTCCTTTTGAGTTAGTA
TGGTTTTCCGTGTCTTTGATTGTTGTAGACTTAGTCAGTGGAGGCCTTTC
GTTGCTGCTCTTCGTTGGTTTCGGTTGTGGGATTTCGTTAGATTTGTTGC
GGTGAACGGCTCTTTTGCTTGAATGTTGCTCAGCTTTTTCAGCAAAGTTT
CGCTGTGACTTCCTAGAGATTTCTTGAGGTGCAGACCATAATGCAGCCTT
TTGAGATGGTTTTGTTGAGATATCTAATTTGTTTTCGATAGGTGATTGGT
CTTGATTAATCAGATCTTGCTGATTAGACTTAGTTTTGATTTCCTGTTTG
GGCTTCATAATGGAATCAATAGCCGTCGACACTTTGGAATCTAAATACTT
GCCGCTTGAAGAGGAATACGAATAATCAGCAGTGTGAGAATTTGTTGATA
TATGTGAAATTAGATGACTTTTATGTGAAGTTTCATCAAGTTCTTTGGTC
TCTGAGTTACTGTTCTTAGTCTCGttcttaattttaattttcttggttCG
ATACTCCTCGTCTTCTGATTCTACATTTTCCACGTGTTCAATTAACCCAA
ACGAACCAATCACAGAAGGAGATTTACTTGGTGAATATCCACTCAACGGT
GAAACAGGGGAGGATCCTCCTGAGCTATTGTAATGACTTGGTGTTTGATT
TCCAACCGTTAATAGATTTGGTGGTCTgtttttttctggtttcaaaCTTG
TTTCAATCTCTGAAATGTCGGTTTTCTTGTTTATGTGTTGGTTTACGTGT
TGACCGGTTTCCCAATTTGAGGTATTTGATTTAGTATTTTTATCTCCATT
TGTGATGTTGATGGAATCAGTTCTACAATTATTTGAAATATCTTGATCCA
GAGGCTCGACAGCTTTAGTAATAGGTGAATATTGTGGCTCGTTTATAGAC
GATACTTCTGGAATATCTTGTTGTTTCTGATCTTCTAACTTGGAAACATT
TGGGTTTCGAGTTTCATTTCCATTAGTGAGTTGCGAGTGAGTCCTTCCGT
TTATTGTTGGAAAATTTTGTTGCACCTTGCTATCTTCCTTCTTGTCAACG
CTTTGCTTTTCGTCATCAGTCATTGCGTTTCCCAATGTTGATGGAGGATT
TGGTGGCCccttttcttcaatctttgagACATTTCCTGATGCATCAAATG
TGAATTCAAGGACTGGcattttcaatgttttcttctttttcttttcttgt
ggTTTCTTGGTCTGTGGAGACAAGTTGACCGTCTTGGTAACAACACGTGG
GCCGTTTCCATTCTGGTGGTGCATGTCTTTGACAAGATTTGAAATGTTAG
TCGACATTTTCTTTAGATACTGTTTGTTATGTAAttgttttgctttcttt
ttgttattgtttttgttcT Run BLAST on NCBI transcript from alignment at sc0000575:72160..74035- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026579 ID=TCONS_00026579|Name=TCONS_00026579|organism=Clytia hemisphaerica|type=transcript|length=1876bp|location=Sequence derived from alignment at sc0000575:72160..74035- (Clytia hemisphaerica)
TTTCTTTGACGTTGTGGGCTGACTTCTGGTAATGCGTAGATAGGTTCCTC
TTTAAATGCATCAGGTGAGGGTTCAGAAGAAATTCCACTGTCAGATAACA
CGGATGCTCCCCTTGAAATTGTTTTCTTTGTACTGATAACGGGTTCATAC
AAAGGGTTACCATTCTCATCAAGAAGATCTGAGCTTTGAACAAAGACATC
AGCTTCACCCTCCTGAATCGTTGTAGCCCCCAACTGTAGGTCTGCTGCCC
CCGTCCACCCGCTATATGGTAGCGGGACCGGCGGTCTTTCCGATGACGAT
TCCCTACTAGCAGATTTCNTATATGGTAGGGGGACAGGTGGTCTGTCCGA
TGATGATTCCCTGCTTGCAGATTTTTTATTTTTAACAACTGGTGCGTAAA
GAGGGTCACCATTGTCGTCTAGAAGTTCCGGGGTGTCAGGTCTGGAGAGA
CTTTCCTTGCTCGGCTTTGGGGTGACAGGCGGAGGGCGTAGTCCTTTTGA
GTTAGTATGGTTTTCCGTGTCTTTGATTGTTGTAGACTTAGTCAGTGGAG
GCCTTTCGTTGCTGCTCTTCGTTGGTTTCGGTTGTGGGATTTCGTTAGAT
TTGTTGCGGTGAACGGCTCTTTTGCTTGAATGTTGCTCAGCTTTTTCAGC
AAAGTTTCGCTGTGACTTCCTAGAGATTTCTTGAGGTGCAGACCATAATG
CAGCCTTTTGAGATGGTTTTGTTGAGATATCTAATTTGTTTTCGATAGGT
GATTGGTCTTGATTAATCAGATCTTGCTGATTAGACTTAGTTTTGATTTC
CTGTTTGGGCTTCATAATGGAATCAATAGCCGTCGACACTTTGGAATCTA
AATACTTGCCGCTTGAAGAGGAATACGAATAATCAGCAGTGTGAGAATTT
GTTGATATATGTGAAATTAGATGACTTTTATGTGAAGTTTCATCAAGTTC
TTTGGTCTCTGAGTTACTGTTCTTAGTCTCGTTCTTAATTTTAATTTTCT
TGGTTCGATACTCCTCGTCTTCTGATTCTACATTTTCCACGTGTTCAATT
AACCCAAACGAACCAATCACAGAAGGAGATTTACTTGGTGAATATCCACT
CAACGGTGAAACAGGGGAGGATCCTCCTGAGCTATTGTAATGACTTGGTG
TTTGATTTCCAACCGTTAATAGATTTGGTGGTCTGTTTTTTTCTGGTTTC
AAACTTGTTTCAATCTCTGAAATGTCGGTTTTCTTGTTTATGTGTTGGTT
TACGTGTTGACCGGTTTCCCAATTTGAGGTATTTGATTTAGTATTTTTAT
CTCCATTTGTGATGTTGATGGAATCAGTTCTACAATTATTTGAAATATCT
TGATCCAGAGGCTCGACAGCTTTAGTAATAGGTGAATATTGTGGCTCGTT
TATAGACGATACTTCTGGAATATCTTGTTGTTTCTGATCTTCTAACTTGG
AAACATTTGGGTTTCGAGTTTCATTTCCATTAGTGAGTTGCGAGTGAGTC
CTTCCGTTTATTGTTGGAAAATTTTGTTGCACCTTGCTATCTTCCTTCTT
GTCAACGCTTTGCTTTTCGTCATCAGTCATTGCGTTTCCCAATGTTGATG
GAGGATTTGGTGGCCCCTTTTCTTCAATCTTTGAGACATTTCCTGATGCA
TCAAATGTGAATTCAAGGACTGGCATTTTCAATGTTTTCTTCTTTTTCTT
TTCTTGTGGTTTCTTGGTCTGTGGAGACAAGTTGACCGTCTTGGTAACAA
CACGTGGGCCGTTTCCATTCTGGTGGTGCATGTCTTTGACAAGATTTGAA
ATGTTAGTCGACATTTTCTTTAGATACTGTTTGTTATGTAATTGTTTTGC
TTTCTTTTTGTTATTGTTTTTGTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026579-exon-sc0000575-1575043694:73756..74035 | TCONS_00026579-exon-sc0000575-1575043694:73756..74035 | Clytia hemisphaerica | exon |
| TCONS_00026579-exon-sc0000575-1575043694:72160..73698 | TCONS_00026579-exon-sc0000575-1575043694:72160..73698 | Clytia hemisphaerica | exon |
| TCONS_00026579-exon-sc0000575-1510915933:73756..74035 | TCONS_00026579-exon-sc0000575-1510915933:73756..74035 | Clytia hemisphaerica | exon |
| TCONS_00026579-exon-sc0000575-1510915933:72160..73698 | TCONS_00026579-exon-sc0000575-1510915933:72160..73698 | Clytia hemisphaerica | exon |
| TCONS_00026579-exon-sc0000575-1491911889:73756..74035 | TCONS_00026579-exon-sc0000575-1491911889:73756..74035 | Clytia hemisphaerica | exon |
| TCONS_00026579-exon-sc0000575-1491911889:72160..73698 | TCONS_00026579-exon-sc0000575-1491911889:72160..73698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000575 | supercontig | sc0000575:72160..74035 - |
Blast
The following BLAST results are available for this feature:
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