TCONS_00026548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026548
Unique NameTCONS_00026548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026548 ID=TCONS_00026548|Name=TCONS_00026548|organism=Clytia hemisphaerica|type=transcript|length=1277bp
CTTAATCAATACAACGATACAAGAATTCAAACAGACAACACCTCAATCGA
AAGTTTAGGAAATACAACGAAACACAAAGACAcgaaaatttttaagaata
agaaattttattacGAAGATTTATTTTATTGACGAAATGAAGCATTTAGC
TTCTTTTCTTCTTGCTACTGGTTTAGCATTGACTGTTGGAGCTCCAACAA
AATATTCGACCACACCATTCCAAACGCAACCTACAAGAGCACCACATGCA
TGTCAAGCAAACGATTTATGTACGAAAGCGGGAGTATATGTTTACGACAA
GGATGATCGTTATTTCTTCGTATGCGCTGATGTCAACCTCAACTCTGGTT
GTCAAAAATGTCCTTCTGATGACACCAAATATTCACTCAAATGTGAAGCC
TGTCTTCCAAGGGCAGATGTAAACGATCCAAACTTGCAATGTCCACCTAA
AGACAACAATAAAGGAGGTGCTGATAATTGTGCACCAAAGGACTTTTGTA
AAGACCGTATGGACGGTAAACACGCAGCACCCGGCGATAACACCAAATTC
TTCTCTTGTTCACATTACCAAAGTACTCCATGTCAACCATGTCCTGGTGG
CCTCGTTTTCGATGAAGCATGCCAGAGCTGTAAACGAGAGTCTGAAGTTT
GCTTAAACCCACCCACACAAgcaccaacaaaaacaaaaacaacaacgaCA
ACGAAAGCTCCAACGACACAAGCTGCTCCTACTACAACGACAACGACTGA
AGAACCGACGACACAAGCTGCACCAACAACGACAACTCAAGCACCAACAA
CAACGACTGAAGCTCCAACAACGACCACCACTGAAGCACCATCCACACAA
GCTGCACCCACTACAACAACGACAACTGAAGCTCCGACCACAACTACAGT
AGCACCAACGCAAGCTAAACAACCTTGTCCACCATCACCAGACTTTTGTG
CAGATAAACCAAACAGAATGTTTGCAAACCCTTATGACGAAACTGTCTTT
TTCCACTGTGATAATAAAAAAGCTTCACTATGCCAACCGTGTCCTGGAGG
ATTAAAATTCTACGAAATCTGTCAAAACTGTCTTTTCCCTGGAAGCGACA
CCAgCAAATGTGGTAAAGCTACAACAACACAAGCAGCCCCGAAGACAACG
CAACCAGCACCAGAAACAACTCAGGCTGCCCCGAAGACAACGCAACCAAC
CTCTGCACCTGTTTGTCCACCAGAAAACTTCTGTAATGATAAACAAGATG
GAAAATACGCCAACCCAAAAAATCCAC
Run BLAST on NCBI

transcript from alignment at sc0000575:18611..24060+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026548 ID=TCONS_00026548|Name=TCONS_00026548|organism=Clytia hemisphaerica|type=transcript|length=5450bp|location=Sequence derived from alignment at sc0000575:18611..24060+ (Clytia hemisphaerica)
CTTAATCAATACAACGATACAAGAATTCAAACAGACAACACCTCAATCGA
AAGTTTAGGAAATACAACGAAACACAAAGACAcgaaaatttttaagaata
agaaattttattacGAAGATTTATTTTATTGACGAAATGAAGCATTTAGC
TTCTTTTCTTCTTGCTACTGGTTTAGCATTGACTGGTGAGTTTGCTTTTC
TTATTACTTTATCCGGATGTATAATATTGTATACACTATGGAGATAATTG
TCTACACATGCACAGTGGAAGGAAACGATATAGAACTATTGTTTGCAAAA
GTAGAGGAGTTTAGCAGCGGATACAAGAAATTATAACGTTGCAACTGCAT
ACTTCTATGTTTCTTGATAGAGCTTGCAGCTATCGTGACAAAAATTAATG
ATGAtagtgtgatttttttgttgttcACGCAAGCttatgtcaaattttgt
aacgacaaatttgtaaaatttaaaatttgttcaGGGAACTTATTACCAAG
AGCTAAGTTCTTCGTAAAATTAGAAATATTTATTGCTTTGTCAATATAAT
AGTTCACTTAAGAATTTAACCACAGTATTTTCTGTTATCTTAGCTTTCTT
GACagtttttcgtgaaaatttacttCTTTGTTAATTTGTTTTTAGTTGGA
GCTCCAACAAAATATTCGACCACACCATTCCAAACGCAACCTACAAGAGC
ACCACATGCATGTAAGTATCATGGTTAATATTTAGTAACCTCTAAGCCAA
AATTACTTCTGTAGCACCAAGCTTTACCAAAGAGACTGGAAGTCGTGAAA
AAGTATTATATGCGGAATGTTGGTCTCACGATTTACAGTAAATGTTGGTA
AAATAATCAAATGTTTGAAACACCGTAGACAAAAAGCCATGTATTTAGAA
AAAAGACAATTTAGTTCCCATGGATACAAAAAATAATCAGATGattaata
acaataaaaaacCCACATTTTGGTCATTAAGCACCTGATTAAATTAACTC
GAATTAAGTAAGATTTAATTAGAGGGAAGAATGACAATAATTACAAGCGA
CACCCTTCACGAGTAGGAACGAAACTAAAACCTCTGTATATTGGAACAAC
TTCTAAGTGATTACGGACATAAACACATTTCGTCATGACCCTTTgataga
aaatttaaaaatatttcttattcaTTAATTTTCACCCTCAAATATTTAAT
AAGGTTTTATTCCTACTAAGTCATCGCCAGTCAAAATAAAGAGATTTTTT
CCTGGATATCCGGATCTAAAGATTCGATAGCCTACTTGATTAGCCGATCA
ATACAGGACAATTTGACATTCTATTTCCACGGGTCCCATGAGAATAGGAA
CCAGTTTGGCTATTCATGAATTGAACATAAGGAGTATAAGTGTTTGCTTG
CTCCGGGTGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCTGGGTGGGA
TATGTGCGTGCTTTATGGTTCGGATTTCTCACCTTACAAAGTCTGTCTAA
GAGTTGcagaaatcagaaaattttgaactAGTCTCACTAGGGACGCACAC
CCAACACTCATAAATCTTAGGCCTCCACTCTCACCCCGTTTGCTTGGTAC
AGTGAGACTATTTTTCCAAATAAATGTATAAAAGACTTACACCAGTATTT
GATTACAACACCAGGTCAAGCAAACGATTTATGTACGAAAGCGGGAGTAT
ATGTTTACGACAAGGATGATCGTTATTTCTTCGTATGCGCTGATGTCAAC
CTCAACTCTGGTTGTCAAAAATGTCCTTCTGATGACACCAAATATTCACT
CAAATGTGAAGCCTGTCTTCCAAGGGCAGATGGTAAGTTGGAAACACTGT
ATAACAGACAAATTGCGTTTATTATTGCCTTTGTACAGTTTTATTGCACG
TTGAAATCAAACGTCCTTAGTTTCTGTTATCATTGACGATTgtctaaaaa
agaaaacttagTGTGTTTGTGATTTCAGAGAAGAAGTATTAAACCCGATA
GGATCTTTTCAGCCTCGTTTATTCGAGTATTCTCagcaggggataaaaat
tagAGCGTAATCtttcactggggacgatattttggccaattcttCCAGTG
GAGAAGGGTCTCAattggtctgtgagaaggggtttcACAATCAATGAATA
ATCAAATCTCATCTTTGTATTTTTGCAGTAAACGATCCAAACTTGCAATG
TCCACCTAAAGACAACAATAAAGGAGGTGCTGATAATTGTAAGTAAAAGA
TTCGCAACGTTATTGAacatgttttttcttgaaaaatgaacACATGAACC
AGTCAAAATTGATACAGTGGAtactctccataactcgaacatgcaAGAGG
AGCACAAATTTGTTCatgttaaggaaatttcgagttacgggTAAAGCTTA
TAAGGCACTGTTAattgaagggaccataaaacttgatcgagttaaggaga
cattcgagttataaaggttcgagttgaagagactccactgtactgAAAAT
CACTCTTCTTGAGATTGACGGAAGAAtcgttttgatttgatttgctTCTT
TACCGTAAAGTATTTTAGAATATCGCTTCCGTCGAAgctatttatatcaa
aatttgcGCAGTCGGACAACGaaacttttctcaaaaatccaatACTTTAT
AGTTCAACTTATTTTGTTGTATTCTGATCATCTACATTTGAAGGCAAATC
TATAACCCTCCTTGATACCAAGCCTTTACTAGAAAACTAATTGACTTTTC
TTTCAACCACTCAACAGGTGCACCAAAGGACTTTTGTAAAGACCGTATGG
ACGGTAAACACGCAGCACCCGGCGATAACACCAAATTCTTCTCTTGTTCA
CATTACCAAAGTACTCCATGTCAACCATGTCCTGGTGGCCTCGTTTTCGA
TGAAGCATGCCAGAGCTGTAAACGAGAGTCTGAAGGTTGGTAATATTCTA
AAAAAGGGTCTAAAAGTTAAGAGACTAAGAAATTTCATGTATATCGATGG
GTATTTTGTGATGAGGTTTAAAACAAGATAATTGTATGAAGCAAAGCTTC
TTTTTGGAAAGAGGAGAAGTTTCTTTCAACGCTTATTTATCAAGCTTTCC
CAATTAAGTACACTATACTCGATTACGAAAGGGCTTCTAATCGAAATGCA
CATTCAAAATCATCTGCCTTACCAAAAGAAAGTTTCTTTAAGTAAAAATA
TAGAGaattccattccacccaatagctgattggttgaaagtgacgtattg
actgattttacgttaCTTATAACCAATCAACTATTGGgtctgtgatgtaa
tgtcagaagacattgcagtggtgcatatcatgaattagcaAGCACCTCAC
TGAAAACCGGGATTCtttatctcgtttcttagtgagttccacttttaCTA
Agttctattttttgaaaagcctttcaagtgcgctttgacgcaaattcgat
tatttcgCTACTGCAAGAGCTTGAATGCTAAAAGTGACGTCATAAAATCG
ACTGTTTAGAGAAaaccaaacattcgaaaaaagtcgcaaagtggaataga
cgttaattgcgtagaaaaaacgcgggcgacgtctagtataggctaataGA
GAATCATCATCGTCCACTTTTCATATTCAGTTTGCTTAAACCCACCCACA
CAAgcaccaacaaaaacaaaaacaacaacgaCAACGAAAGCTCCAACGAC
ACAAGCTGCTCCTACTACAACGACAACGACTGAAGAACCGACGACACAAG
CTGCACCAACAACGACAACTCAAGCACCAACAACAACGACTGAAGCTCCA
ACAACGACCACCACTGAAGCACCATCCACACAAGCTGCACCCACTACAAC
AACGACAACTGAAGCTCCGACCACAACTACAGTAGCACCAACGCAAGCTA
AACAACCTTGTAAGTTTGTCTcaagttttttataataactctttgaaaag
atttgagctagtaaaaatataataatttcAGTCAGTAACATATTCAGAGA
TAAAATAATGGAAGGCTTGCAAAAAGAAACTACAAACCTCACTCCTTAAT
CTGATAAGGGTTCTTATTGTGTTGTCTTTTCCATCAAACTaatcattttt
atgtttttcacaACTTTCAGGTCCACCATCACCAGACTTTTGTGCAGATA
AACCAAACAGAATGTTTGCAAACCCTTATGACGAAACTGTCTTTTTCCAC
TGTGATAATAAAAAAGCTTCACTATGCCAACCGTGTCCTGGAGGATTAAA
ATTCTACGAAATCTGTCAAAACTGTCTTTTCCCTGGAAGCGACACCAGTA
CGTATTACAGTTACCTGTCTCGaattcgatctttaagggaCGAAGAGTTT
TTTCAGACTTAGAGAAAGATTCCAATTATTAGAGAGCATTTTATATTACT
TTCTACAGAAAGACtcaaataatagaagttcgNACCAATTATAGAGATCA
CTTTATATTACTTTCTACAGAAAGACTCAAATAATAGAAGTTTGAATTAG
AGAGGGTCCACTGCATCTAATTTGGAAACAAACAAAGTATAAGATGTCTA
TATAAAAACTTGTCCGCTTTTTTTGGGCCATAATACACCAGATCAATGAA
GcttattgaaatttgaaaatatcatttaaaaattgttttaggCAAATGTG
GTAAAGCTACAACAACACAAGCAGCCCCGAAGACAACGCAACCAGCACCA
GAAACAACTCAGGCTGCCCCAAAGACAACGCAACCAGCACCAGAGACAAC
TCAGGCTGCCCCGAAGACAACGCAACCAGCACCAGAGACAACTCAGGCTG
CCCCGAAGACAACGCAACCAACCTCTGCACCTGTTTGTAAGTTATGCAAt
aagttattttttaaattaagtaagaaaataaataaaataaggaGCAATCA
GTCTAAATTGGGAATTCGTctttaattaaataaaaaaattggccTGAGTC
TCTCAAAATAATGCTAAAATACAAGAACAGTATATAAATGTTCGTTTGGA
GGCCCACTGTCAGTATAGCTTGTAATTCTGAATAattatttgaaatgttt
tatcGCTGGGTTAACTTCCATTGAgacatattttttaaacatttacatTA
CAATAAATTCGACTGACAATTCTAACTTATTGTGAAAAGACGTAAACATT
TACATGTgaaataataatttctttatttcgaCATTAGGTCCACCAGAAAA
CTTCTGTAATGATAAACAAGATGGAAAATACGCCAACCCAAAAAATCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014932XLOC_014932Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026548-exon-sc0000575-1491911889:18611..18795TCONS_00026548-exon-sc0000575-1491911889:18611..18795Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1510915933:18611..18795TCONS_00026548-exon-sc0000575-1510915933:18611..18795Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1575043694:18611..18795TCONS_00026548-exon-sc0000575-1575043694:18611..18795Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1491911889:19256..19321TCONS_00026548-exon-sc0000575-1491911889:19256..19321Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1510915933:19256..19321TCONS_00026548-exon-sc0000575-1510915933:19256..19321Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1575043694:19256..19321TCONS_00026548-exon-sc0000575-1575043694:19256..19321Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1491911889:20475..20642TCONS_00026548-exon-sc0000575-1491911889:20475..20642Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1510915933:20475..20642TCONS_00026548-exon-sc0000575-1510915933:20475..20642Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1575043694:20475..20642TCONS_00026548-exon-sc0000575-1575043694:20475..20642Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1491911889:20989..21048TCONS_00026548-exon-sc0000575-1491911889:20989..21048Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1510915933:20989..21048TCONS_00026548-exon-sc0000575-1510915933:20989..21048Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1575043694:20989..21048TCONS_00026548-exon-sc0000575-1575043694:20989..21048Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1491911889:21578..21745TCONS_00026548-exon-sc0000575-1491911889:21578..21745Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1510915933:21578..21745TCONS_00026548-exon-sc0000575-1510915933:21578..21745Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1575043694:21578..21745TCONS_00026548-exon-sc0000575-1575043694:21578..21745Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1491911889:22441..22719TCONS_00026548-exon-sc0000575-1491911889:22441..22719Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1510915933:22441..22719TCONS_00026548-exon-sc0000575-1510915933:22441..22719Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1575043694:22441..22719TCONS_00026548-exon-sc0000575-1575043694:22441..22719Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1491911889:22931..23107TCONS_00026548-exon-sc0000575-1491911889:22931..23107Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1510915933:22931..23107TCONS_00026548-exon-sc0000575-1510915933:22931..23107Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1575043694:22931..23107TCONS_00026548-exon-sc0000575-1575043694:22931..23107Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1491911889:23452..23522TCONS_00026548-exon-sc0000575-1491911889:23452..23522Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1510915933:23452..23522TCONS_00026548-exon-sc0000575-1510915933:23452..23522Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1575043694:23452..23522TCONS_00026548-exon-sc0000575-1575043694:23452..23522Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1491911889:23607..23646TCONS_00026548-exon-sc0000575-1491911889:23607..23646Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1510915933:23607..23646TCONS_00026548-exon-sc0000575-1510915933:23607..23646Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1575043694:23607..23646TCONS_00026548-exon-sc0000575-1575043694:23607..23646Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1491911889:23998..24060TCONS_00026548-exon-sc0000575-1491911889:23998..24060Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1510915933:23998..24060TCONS_00026548-exon-sc0000575-1510915933:23998..24060Clytia hemisphaericaexon
TCONS_00026548-exon-sc0000575-1575043694:23998..24060TCONS_00026548-exon-sc0000575-1575043694:23998..24060Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000575supercontigsc0000575:18611..24060 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0660674	0	0	0	0	0	0	0	12.4854	10.6165	7.54516	6.44214	1.28292	5.48014	0.0502816	0	0	0	0	0	0	0	0.241075	0.0983162	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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