TCONS_00026526 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00026526
Unique Name	TCONS_00026526
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2114

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000574:79791..85061-

transcript sequence

>TCONS_00026526 ID=TCONS_00026526|Name=TCONS_00026526|organism=Clytia hemisphaerica|type=transcript|length=2114bp
CACATTTCCCAGTATTTTAatcatgttttgattttgttccaGCATAATAA
GATACATTATGGAACATGTAGCAGATGAAATTTTGCTGAGAATCTTCAGT
TACTTGGATACCAAGGATGTGATAACATGTTGCATGGTGTCCAAAAGATT
CCGAAGAGTCACTGAAGACTCTGCAATATACAAGAATTTCAATGTTGACC
ATAACTCGTGTCTTTCATCGGGAGCATATCTCAATCACCTACGTAAACAT
CATAGTAGAGTTGAAAAATTGGTTTTCCAAGATTTCTTCTGGTTACCATC
TACAAAATTGGCTCCAACATTTGCACGTTGTAAAAATCTTGTTGAGCTGA
ATGtgacagGATGCTGCAGTGACCAACAGATTTCTTCATTTCAATTTATT
GATCATGGATTTTGTTATTCAGACAGTTTCAAAAGCTGCTGAAACCAAGA
GTATTACCACCCTTCTTGCTCGTGGTAACACTATATGTTGGAGACATATT
GAACCTGTGTTAACTACGTACACTTTTGAGAAAATAGACTTGAGTTTATC
AGTATTAGCCAAAGATCAAATGACGTggttatcaaaattgaaaaaattgg
agtatGTTAATGTCTCACAGGTGGGACATTTTAAAAGTAACTTGATGAAA
GCTATTGCCACAAATTGTCCAAAGTTATCAGCCCTCAATCTGAGTAATTG
TGAAGATTGGATCAACAAGGATCTCTATGGATTGGAAGCAGTAGcacaaa
aatgtacaaatttGCGAGAACTTAATGTTTCTAATTTACACATTCACTCG
GGTGATGACCAATTGAATCGATTGTGTTCAATCATTGGAGAGATGAAGAA
TCTAAAGAAGCTTTCCATCCCCGCATGCAGTCTTGTCAATAATATCTCAA
TTAAACAATCTCCTGAAAAAGCTGCCAACAATCCTTCAACAACTCCAGAA
AAAACACATCCTACAACGAGATTGTCGCGACAACTTAATGACGATGAAAC
ATTAGTCAGTGCCATTGGTTCAGGTCTGGATCCGATTGTCAAAGGTTGTT
GCGGTTTGGAGGAGCTGGAGATTGTGGACGTTGGTTTCCATTCCCCTTTC
AATCGAGTTGTTTGTGACCAGTTCATTTGCCCATTGACGTCAAACCTTCG
AGACCGAAACTTTCAAGAAATTTGCAAGCTGAAAAATCTCAAGAAACTCT
CACTGGCTGGATTATCAGGTGTTGGGGCTTTCAACTCTTTAGTGGACATT
ACTTCTGCCTGCACCAAACTTGAATCACTGTCAATTGCACAGTGTGGACT
TGCTGGTCATTCTAATGCACTGATGCATTTAAAGAATGCTCTTAAAAATT
GCAAGAGTTTAAAACATTTCAGGATGGACCAGCCACATTTCCACATTAAA
GAAGACCTCCTGGAAGCCTTCCACGGTTGTTACCATCTCCAAACTGTCAC
CTTCATCAATAAAAATGGAAAAGCCAACAAAAGTTTATCATCTTTTGTCA
ACCTTTTCAATAActgcaaatTTCTGGTAGGTTTCTTCTTATTCTCTGGC
ATCACACAAACTGATTGTCAAAGACTACAAAGTACACTCATGAAAAAGTT
TGGCAGTTCTCGGCCACCATTATCGGTTGGCATATTACCTTACCACATGG
CCTTGAAAGATGACGGAATCTCCGAGAAAAATGTTCCTTATCTTTTCACA
CGAGATATCATTTATTTCGAAAGTTCGATCGCCGTTGAAAAGGCCAATGG
CTTGCTCGTTTGATGGGCTGGTGGCGTTTTGTTGCGAAACTTTATGctga
aaattaaagattttgatAGATTGACTCTCTCTCTGCTCGGAAGAAGTTTT
GTCTAAGGGAAGGACCCCTGAACAATAACTTgttttggaaaattcttttg
tttgtaTTGTATTCGTTTCATTTACAAGGATTAATTTATCAACGGTAATA
ATACCGATTGGCAACTAATTTTATCATTAGCTTGTGTCAatgattttgac
atttttcaaaatccttATGCGCttataattttttacatttttatatgGGA
TATTTATATCTTGACTGacctttttttttgtatttaattttagacccgag
aaaaaaagaaaaac

Run BLAST on NCBI

transcript from alignment at sc0000574:79791..85061-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00026526 ID=TCONS_00026526|Name=TCONS_00026526|organism=Clytia hemisphaerica|type=transcript|length=5271bp|location=Sequence derived from alignment at sc0000574:79791..85061- (Clytia hemisphaerica)
CACATTTCCCAGTATTTTAATCATGTTTTGATTTTGTTCCAGCATAATAA
GATACATTATGGAACATGTAGCAGATGAAATTTTGCTGAGAATCTTCAGT
TACTTGGATACCAAGGATGTGATAACATGTTGCATGGTGTCCAAAAGATT
CCGAAGAGTCACTGAAGACTCTGCAATATACAAGTATGTCTTGTTTGAAG
TTACAAAACTTCCAATATCTTAAGTTAAACATAAAGTTCTAGATGTCACA
ATAAAGTTGTTCAGCTTATGCTGGCTATGTTCTGTATTATATTCTATTTA
TTTATCTATCTATTTATCTATCTATTGTGGTTGAGTTACAGGAGGCTCTG
GAGCCCATTCTCGCAACTATAGATGCTTTTGAGTAAGCATCCCGTCAGCA
CCTTGAACTGACTACCCAATTCCCCTCACATGGCATGGGTTGCCCTGGGC
GAAGGTTTGTTCACTTGCCAAGTGAACTGTCGTGAGTGGGTGAGTGGGAA
TCGAACCTTGGTCACCTGTACAGGAATCCAGGTTGATGTCCACTATACCA
CAACGCCTATTCACACTATACAAGAGGACATTCATTTTCAAAATAGAGAA
AATTGGGTAATAAATGAGGCTAAATCAGGGCCGATTTTGAGGTTGGGCTA
TTAGATAAAACATAACAAACAAACATAAGAACAGCTTCAATTCAGCTATT
CAATTTTTTTAAAACGAAAAAGCTTGAATTCAAACAATTTAATTACTTTT
TATTTATAGGAATTTCAATGTTGACCATAACTCGTGTCTTTCATCGGGAG
CATATCTCAATCACCTACGTAAACATCATAGTAGAGTTGAAAAATTGGTT
TTCCAAGATTTCTTCTGGTTACCATCTACAAAATTGGCTCCAACATTTGC
ACGTTGTAAAAATCTTGTTGAGCTGAATGTGACAGGTTGCAAAATTACTT
CAGCAGGACTTTTGAAAATTTTGGCCAACAATCCTGGAATAAAAAAATTG
GGTTGGACCATTTCAGAAAATGTCTTCTCAGATGAAGGTCATTTGGAAAA
TTTCAAATCAGCATTTAAAAATTTATCCAGCTTGATTTTACATTTTAAGA
CATTGAGAACCTTTGAGATATTTCTACCAGTGTTTGACAGTAAAGATCTA
TTTGTCAATGAGTTTGGTCTCCATTATTTAAAATCATCCTCCTCAAACAC
TTATGGTATTTACGTTAAAACACAGGATAAGTTTCAACTCCATCTAGAGG
ATGCTGCAGTGACCAACAGATTTCTTCATTTCAATTTATTGATCATGGAT
TTTGTTATTCAGACAGTTTCAAAAGCTGCTGAAACCAAGAGTATTACCAC
CCTTCTTGCTCGTGGTAACACTATATGTTGGAGACATATTGAACCTGTGT
TAACTACGTACACTTTTGAGAAAATAGACTTGAGTTTATCAGTATTAGCC
AAAGATCAAATGACGTGGTTATCAAAATTGAAAAAATTGGAGTATGTTAA
TGTCTCACAGGTGGGACATTTTAAAAGTAACTTGATGAAAGCTATTGCCA
CAAATTGTCCAAAGTTATCAGCCCTCAATCTGAGTAATTGTGAAGATTGG
ATCAACAAGGTAAGATTTTACTCTAATTTTTAAAGATTTAGAATGAACTT
CTCTCTTTTTTAAAAACAATTCTAATCAATTTTATTTATCTTTGAATGTT
GACTGTTAAAATTTACATATTTTGAAGGTTTTACTTTTACATAATTATTT
TCCCGTTTTATATTAAACACATTTCATATCACACCAGGACGGTGCGCGTC
TCCCTATTGTTTTAGTGTGCTGAATAAACAAAAAGTTGTTTAATTTCCTC
TTTCTGACCAATCTTGCTACGCACTCGTGTCAATCAAATGTGAAATTAAG
CGTGTAAATTAAAATTGAGTAAGCAAACGATATCACTCTTATTATTTATT
AAAAAATGAAACCTTTTTTGATAAGAAGGATATTGGTTTTTGCAATTAGA
AATTTCTCATTCGATGGACGCGAGTTCATTAACCCACATGATTCTTTATG
AATAATATTTCAAACTTTTTGTTCCCAATAATAAGTTAAAGAAATGTTAA
GCTGAAAACCAATATGCTAATCTCATATCATGAGTCAAGCCTTTGACCTC
ATTTTTTAACGAATACTATTTTTTGTGGTTCATAGATTTTGTGTCATTCC
AAAAAAAAGAATCACTGTGATCACCAGACACCTAAAATTTCATTAAAACC
TTTGATATTTTTCTCCAAAGGATCTCTATGGATTGGAAGCAGTAGCACAA
AAATGTACAAATTTGCGAGAACTTAATGTTTCTAATTTACACATTCACTC
GGGTGATGACCAATTGAATCGATTGTGTTCAATCATTGGAGAGATGAAGA
ATCTAAAGAAGCTTTCCATCCCCGCATGCAGTCTTGTCAATAATATCTCA
ATTAAACAATCTCCTGAAAAAGCTGGTAAGAAATCTATGAGCAGTTCACC
TTCATGGAAAGCAGAGACCTTCAAACCTTCATCACTTTTAGTTTCTTTGG
ATTCATCAAACCCTTCATTCACCGCTTCTCCTTCGACTTCAGCCAACAAT
CCTTCAACAACTCCAGAAAAAACACATCCTACAACGAGATTGTCGCGACA
ACTTAATGACGATGAAACATTAGTCAGTGCCATTGGTTCAGGTCTGGATC
CGATTGTCAAAGGTTGTTGCGGTTTGGAGGAGCTGGAGATTGTGGACGTT
GGTTTCCATTCCCCTTTCAATCGAGTTGTTTGTGACCAGTTCATTTGGTA
TGACCTTTTCATTTTATTTCACAACCCTTCTTTGTTGCTTTTTTGGAAAG
TAGACTCTTCTAATCAGTGTAGTAGTTAGAAGGTAAGGCTACATCGATTT
ATTTATCAGAATCTTCTCCTTGTTTTAGCCCATTGACGTCAAACCTTCGA
GACCGAAACTTTCAAGAAATTTGCAAGCTGAAAAATCTCAAGAAACTCTC
ACTGGCTGGTATGATGACAATATCCTTTCAATGAATTTTTTTTTTTTAAT
CTGTGTGGCTTAGAGTTTTCTATAGAGCTTCACGTCAAATTTCTAAAGAT
TCTGGTAGACATCAATTTTCAACGTCATTCCTCCCTGGTAAATTTGACTC
ATATCCTTTTTGGCGTTCAGGTGTAGTGTTTTGGTGTTTATGGGTGATAT
ATTTAGAGATTTTGAAATGCAAGTTTTAATGGTATGGAAAGGAAAGTTGC
TTATTTTTTCGTTCTTGTNGAGATTTTGAAATGCGAGTACTATGCTATGG
GAAGGAAAGTTGCTTATTTATTTCATTTTTGCTCATCGCAGGATTATCAG
GTGTTGGGGCTTTCAACTCTTTAGTGGACATTACTTCTGCCTGCACCAAA
CTTGAATCACTGTCAATTGCACAGTGTGGACTTGCTGGTCATTCTAATGC
ACTGATGCATTTAAAGAATGCTCTTAAAAATTGCAAGAGTTTAAAACATT
TCAGGTTTGATATCATTTTGCAATACTTTATTTTCTAATAAAGATTCTCT
TTTTGAAGTTTTAAATAATTTTGAACGTTTCAAATCTATATTTCCATTTT
TTTTTATTGAACCACATATTCCAGTCTCTGACAAGCTCACAAGTCTTTCC
TTTTTTTTGCTGCTTCATACAGATTCAAGCCCTATTTCAAGATTCTCCTT
CCTTTAATAAGGAATGGGCAGCAAAATATGCATTATCCCCCTGTAGATGA
TAGGGTTTTTTGGATTTTTTTTTCACTTGGAAATCCTGAGAAATTTGAAA
AAAGTTTCGGAAAATCCAGGATTTTTCCTCATTATTTGGTCATCTGTATC
GGAAAATCCATAAAACTTGCTCTATCTTCTCGAGTTTTCTTGCCAAGTAT
CGGAAAATCTTGAATGTTACAGAAATCCTGAAGTTTTTCAAAAGCAAACT
GTTACAGAAAATCCATGTCGTCCTCATGGTGAGGGGGGTAACGGACTATG
ACTGGAACCGCCCAATGATCTTCTCTTTCCATTTCTTTAGGATGGACCAG
CCACATTTCCACATTAAAGAAGACCTCCTGGAAGCCTTCCACGGTTGTTA
CCATCTCCAAACTGTCACCTTCATCAATAAAAATGGAAAAGCCAACAAAA
GTTTATCATCTTTTGTCAACCTTTTCAATAACGTAATTTTTCTCTTTTTA
ATTCACCCGGTCAACAGCTATGTAGATTCTATATTTCAAAAAGTACACTG
ACTGTTTTACTTGTCTACAGATTTACAAGTTGTATTTTAGATTTTTACAC
TGAGCAAATTCATGGCAAAAAAGTATCTATGGCATGGCATTGAAACCCTA
TTCATTTCTATTCTTTGAGCAGTGGAGCATTCTGAGTTACAATTAAAATT
TTCTCTTCTTTTTGAACAGTGCAAATTTCTGGTAGGTTTCTTCTTATTCT
CTGGCATCACACAAACTGATTGTCAAAGACTACAAAGTACACTCATGAAA
AAGTAGGTGTATTTTGATTATGTAATAATTCTTTAAAAAAATTTCTTTAT
CTAGTTTAAAGGAAGGTTTGATAGCTGCTCAAGATGCTTTTATTCTATAT
ATCTATGAATGTCTCTTAGGATCCCGTAGTGTAAAAATTTTCCTTTTTGA
GCAAAAGGCTTCACAGAGCATTTTTAGCGCCCTTTATTCTCTCTTTATTT
TCCTTTTCCCGATCTAGACCTCAATTATCTTAAAATTTCTATTCCGTACC
ATAGGTTTGGCAGTTCTCGGCCACCATTATCGGTTGGCATATTACCTTAC
CACATGGCCTTGAAAGATGACGGAATCTCCGAGAAAAATGTTCCTTATCT
TTTCACACGAGATATCATTTATTTCGAAAGTTCGATCGCCGTTGAAAAGG
CCAATGGCTTGCTCGTTTGATGGGCTGGTGGCGTTTTGTTGCGAAACTTT
ATGCTGAAAATTAAAGATTTTGATAGATTGACTCTCTCTCTGCTCGGAAG
AAGTTTTGTCTAAGGGAAGGACCCCTGAACAATAACTTGTTTTGGAAAAT
TCTTTTGTTTGTATTGTATTCGTTTCATTTACAAGGATTAATTTATCAAC
GGTAATAATACCGATTGGCAACTAATTTTATCATTAGCTTGTGTCAATGA
TTTTGACATTTTTCAAAATCCTTATGCGCTTATAATTTTTTACATTTTTA
TATGGGATATTTATATCTTGACTGACCTTTTTTTTTGTATTTAATTTTAG
ACCCGAGAAAAAAAGAAAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_014916	XLOC_014916	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000574	supercontig	sc0000574:79791..85061 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.4455e-10	2.23778	0	0	0	2.95494	7.47296e-10	0	1.79878	1.15421e-05	0.591657	0.402496	6.62238e-05	0.0568189	0	1.27203e-09	1.19553	0.527422	0	0.545697	1.27568	0.618212	1.55866e-08	0	0	0	2.26923e-06	0.476161	0	2.74163e-07

Blast

[Close]

BLAST of TCONS_00026526 vs. Swiss-Prot (Human)
Match: FXL18 (F-box/LRR-repeat protein 18 OS=Homo sapiens GN=FBXL18 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.899e-26
Identity = 91/332 (27.41%), Postives = 151/332 (45.48%), Query Frame = 3

Query:  675 LSALNLSNC-------------EDWINKDLYGLEAVAQKCTNLRELNVSNLHIHSGDDQLNRLCSIIGEMKNLKKLSIPACSLVNNISIKQSPEKAANNPS--TTPEKTHPTTRLSRQLNDDETLVSAI---GSGLDPIVKGCCGLEELEIVDVGFHS--PFNRVVCDQFI--CPLTSNLRDRNFQEICKLKNLKKLSLAGLSGVGAFNSLVDITSACTKLESLSIAQCGLAGHSNALMHLKNALKNCKSLKHFRMDQPHFHIKEDLLEAFHGCYHLQTVTFINKNGKANKSLSSFVNLFNNCKFLVGFFLFSGITQTDCQRLQSTLMKKFG 1604
            L++LNLS C             ED I+  +  LE +   C NLR LN+S  H HS +     LC ++  +++L+ LS+P CS+ ++       ++A   P+    P       R+  Q         A     S    ++K    LE LE++   F S  P N       +  C    ++ D     I +L  L+ L+LA L  V   + LV+I   C +L SLS+A  G+ G    +  L + LK+CK L+  R++QP+F       +A   C  LQ +  ++++G       + +     C  +V   LF+G +   C+ LQ +L++++G
Sbjct:  345 LASLNLSGCVHCLSPDSLLRKAEDDIDSSI--LETLVASCCNLRHLNLSAAHHHSSEGLGRHLCQLLARLRHLRSLSLPVCSVADS---APRADRAPAQPAMHAVPRGFGKKVRVGVQSCPSPFSGQACPQPSSVFWSLLKNLPFLEHLELIGSNFSSAMPRNEPAIRNSLPPCSRAQSVGDSEVAAIGQLAFLRHLTLAQLPSVLTGSGLVNIGLQCQQLRSLSLANLGMMGKVVYMPALSDMLKHCKRLRDLRLEQPYFSANAQFFQALSQCPSLQRLCLVSRSGTLQP--DAVLAFMARCLQVVMCHLFTGESLATCKSLQQSLLRRWG 669

The following BLAST results are available for this feature:

BLAST of TCONS_00026526 vs. Swiss-Prot (Human)

BLAST of TCONS_00026526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FXL18	1.899e-26	27.41	F-box/LRR-repeat protein 18 OS=Homo sapiens GN=FBX...	[more]

You are here

TCONS_00026526 (transcript) - C. hemisphaerica