TCONS_00026525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026525
Unique NameTCONS_00026525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026525 ID=TCONS_00026525|Name=TCONS_00026525|organism=Clytia hemisphaerica|type=transcript|length=2354bp
ttcagAATTAATAGAACTATTAATAAAATACTAATAAAGAGAGAAGCtaa
taaaaacaacattatCTGCGATGGCGACACCAGCATTGGAAAATATCCAT
ATCTCCAGTAAAGATGATAACGTTACCGCCAATGACAGCAACGAGCCAAT
CACGAAGAAGCAACGTCAAAGTGACAAATCACCAAAAACCTCCACATCAA
CAACTGAGAGTTCACCTTCATCTGCAAGCAACACCAACAATACTACCTCG
AACTCAACTTCTGAATCATTGGCACAACTTGCTCAAAGTGTCATCGAAGA
AATGGATATGAAACGCAAGAACGACGAAGCTATGATTTCTGaGTTTCGTA
AGATGATGGAAATGCAGACAGACACGATGTGTAACACTTTGCAGCAATCC
TTCGGTAAACTTTACCAATCCTCCAACGAGACTTGCCAAGAAAAGCTCCA
AAAACTTTACAACATCCTCGGAAGGATCAGTCAGTTAGAACAAGAAATGT
TGACTTTCAAGGACGCTTTGAAAATGTTATATTCCGAAGTTGAAACCTCT
AACTGAGACAGGAAAGTGTAAATAGAGCTAGATTGCAGTTTATTTTCAAT
GTAGATACGATTCTGAGACATTTTTGTATTACCAACAATGACCTTTGGGT
TAAGTTATTTTAGTCATTATATTGAAGCCTGTTATTTTTATTGGCATTAA
GCTTGTGCTTTGTGCTTTAGTACATGACCAGCAAGAAAGACTTAGGCTTG
AGATCTTGAGACCAGATTGGATACGATAAAGTAAAGTTCCTTAAGCCTTT
TCATATTTCTAGAAATTAGTTTTTCCATTAAAGTCGTTTCTGCGAGTCAC
ATTTTCATCTTGTTTTGTTAGATATTTGTTGAATAGTTTAATTTATTAgg
ttttgaattgaaaagataaaaataaagttttcgaTATAGGACTTGTTATT
TTGTTTTTCAGCGccgaaaattttgtttttcaaaatatcgattttaaaat
taaaacagTTTATTTTTGGGGCTTTCTTTATTCTCCTTTcgaatattatt
aactttttcttttatttgctaCTATTTTCCAAGGCACAGCATGAAAGTCA
GAAAACCCAAACAAGATAAAAACCAATAATTCCTTCCGATTTAAAGCTAG
GTGTTACTGAAATTTCTTCGATATGACTTTTACCTGGAATTTTCGGCCAG
CTTGCGCCAAACTTGGAAAATTCGGATAGAAAAATTTAggttaaaagaaa
attttgagatgaataaaaggaaggttcgttttctttttaaaagattgaTG
AAATAAATTATGTATCATCGGCGACCTTATTAAGTAAAACACAGAATGAA
ATCAGTTCTTTAATAAAAAATTCCTTTCTTAATAAATCTCCTTTCGgaaa
actcgaaaaaaaaaacttttaaaaggacTTGCACGGAATGTGATACTCAT
CAGTCTTTCGCTAACCGTCGACTTGAcaccttttaaaattttgaaaacgt
cTTTGAATCCTTCCACGTTTGAAATATGGTACGTCACGTCACCCTGGTCA
CGTTATCTCTACTCATCATTGGTGTCGTATCCGCCACGGCTTTCGATACC
GACACTAATGAAGACGATGCCGGCAGCGAGGACATGGTTAACGAGAAACG
AACGAGAATGTCTCGACTTTACGACTTTTATCGGAACATGCAACGGAACG
GTGGTCGGGGATACCGATACGGCGATGCATTGCATGATCGATTGTCGAGA
GAACTTTACGGTGACGATGATTTTTCGAACGATTTTGAAGATTACAAGGA
AGAAGAGAGTGATGAAAACAAACTATAGAGAAATCTAACCCTCTAATTTG
GAAATGACGAATTGATACAGCAAATATACTTTTGATAAACAAAAAtgtct
atattttatgattATGTTATCGATCTAGAttagttttgttttttatattt
cactTGTAAACTAGTAGGCAAGACTGAAAAGACGAGAAATGTGCTTTGTT
ATCGAAAATATCTAACCTGTTCTGTCTACCTTGAAGGGGAGAAATTAGTC
GTGAAAAAGTGAAGAATTTTTTTAGGCAAGTGACAAAGTTTTCTGGCCGA
CTTCAAGGGTGTTGTGACAAAGACTTTCCGCAAAAGTGACAAagTTTTTC
ATATTCTTGTTTTATTCAATGGACAATTCTAGAGAAAGTAGTCCATGGGG
GTGGAGAGTTTTACTCCAGTCATTCGCAGGTTACTAGGGTACTATAATCT
CAATTGTTACCCATTTCTTTTAGGAATAGACCATATTCTAGAGTTTTAAA
TGTTCTAAAGTGGCTGAAATAATAAGCGCTCATCCAAACATTCTGAATAA
CATC
Run BLAST on NCBI

transcript from alignment at sc0000574:75236..79510-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026525 ID=TCONS_00026525|Name=TCONS_00026525|organism=Clytia hemisphaerica|type=transcript|length=4275bp|location=Sequence derived from alignment at sc0000574:75236..79510- (Clytia hemisphaerica)
TTCAGAATTAATAGAACTATTAATAAAATACTAATAAAGAGAGAAGCTAA
TAAAAACAACATTATCTGCGATGGCGACACCAGCATTGGAAAATATCCAT
ATGTAAGTTTTTACCTTTAAAGTTTTCTTTCCAACAAGAATGCTCTAGGT
CCGTCAAATAAATACTCAATTTCTGATTTGAAGGTTTTATGTTTAAATAA
GAGTAATATCGTTTGATTACTCATCAATTTTAATTTACAAGCTTTTAACA
TTGAATTAACACGGTTGGTCAAAAAGAGGAAAGGAAAAACATTTTTTTGC
TTATATCAGCATAAATTACAAAAGGCAGACACTGTCCTACTAATATGAAA
TATGTGTCTTATATAAAATGAAAAGATATACAAAATAAAACCTTTAAAGA
GAGTTGAATTGCTAAGAAATTAAAGCATGAGAGCTCTCAAGAAGATGAAA
TAAGGAATAAGGAATAAGAACCACCCTGAAAAAATATCTTACTTTATAAA
AGGTATATCTTCAGGCTGAACTTGGCCAATAAATGATGGAATTTTCGATC
TCGGACATTCAAGTATCTTTTTGAGGATATCAAACATCTAATACTGTATT
CCAAATTATATTTTATTTAGAAATTCGCTCAGTTTTCAATGAAACCCTTA
CTAAAATTTTCATTTCTCCATATAGCTCCAGTAAAGATGATAACGTTACC
GCCAATGACAGCAACGAGCCAATCACGAAGAAGCAACGTCAAAGTGACAA
ATCACCAAAAACCTCCACATCAACAACTGAGAGTTCACCTTCATCTGCAA
GCAACACCAACAATACTACCTCGAACTCAACTTCTGAATCATTGGCACAA
CTTGCTCAAAGTGTCATCGAAGAAATGGATATGAAACGCAAGAACGACGA
AGCTATGATTTCTGGTATGTTATGAAGATTTTCTTTTCATTGTAGTTTTA
TTTTAAGGGATGATAGAGACTAAGCAAAGACTTGTTGTACTTAATTGGCT
GCGACAGTATTTAGGCTTTATTCCCTTGGGACCTAATTAACCATTAAAGG
ATTTCTTAGGCCCTTTTTCCCAAGTGTTTTTTTCCAATTCGACTAGCCAG
TTCAAACTTTAAAATTGTTATATCTCCGGATCTAGAAGGGTTCAGAAGCT
CATTCATAGCTCGCTGGATGGCTTTAAACCTCTTTCTTTTTAACGGCGTC
GGAAAGGATATGGTAGGCGAGGGGTCAAGCCGGAGTTTTTACAAGCTTTT
ATTTGATTTGGTTGGTTGTTAACCAGTAATAAAACAATTTTATTACTTTT
TCTAAAGAATGCGTCATCTCTATTATTTCAAATGAACAATCAGTGAAGTA
TCTTATAAAAACTCTAGCCCATCTCTAGGCGAGGCGAGGGGTCTTATAAA
GCATACGGCCCCTTTGTACCCACATGAATAAGTTGGTTCTGGTTGATTTC
GCACAATTTTTTCCTTTCCATTATTTTTTATTGGTTGACCTTGTCAGAGA
CTCAGGAATAGAGTTTAAAGAGAATGTATTCTTTTGTTTCTTTCAGAGTT
TCGTAAGATGATGGAAATGCAGACAGACACGATGTGTAACACTTTGCAGC
AATCCTTCGGTAAACTTTACCAATCCTCCAACGAGACTTGCCAAGAAAAG
CTCCAAAAACTTTACAACATCCTCGGAAGGATCAGTAAGTCTAAAAGTTT
ATGAGATCTTTGGCGGAATAATCAGAGTTAGCTTAGAAATACTCTAGGGC
ACATAAGGCATAAATTATTTCCATCCTTTTTGCAAACATATTTTTTGGAA
GAGAGGGCTGTCTTATACTAATCAACTCTGTTATCTAAACCCCTGACACA
TTGTGATAAGTCTTTCAAAATAAGTGTCTTTTTATGGTATCGCATTTGAA
ATAATTTTCGTTTTTTTTACACATATGGAATAAACTATTTCCCTCCATTC
TGCACTGTTCTGCATAATTTTTTTTGGCTTTCAGGAATTTCAGTCATAGT
AATAGATCTGAAAACGTTAGGTTATAGTCCTACCCTGTCTTAAAATAATC
GACTATGGTATATAAAACCCCTGACACATTGTGATAAGTCTTTCAACACA
GTGAATTTTGATGTCTTCGCAACTGAAATACTTTTTCGTTTTGTCTACTA
TGTCTAGGTCAGTTAGAACAAGAAATGTTGACTTTCAAGGACGCTTTGAA
AATGTTATATTCCGAAGTTGAAACCTCTAACTGAGACAGGAAAGTGTAAA
TAGAGCTAGATTGCAGTTTATTTTCAATGTAGATACGATTCTGAGACATT
TTTGTATTACCAACAATGACCTTTGGGTTAAGTTATTTTAGTCATTATAT
TGAAGCCTGTTATTTTTATTGGCATTAAGCTTGTGCTTTGTGCTTTAGTA
CATGACCAGCAAGAAAGACTTAGGCTTGAGATCTTGAGACCAGATTGGAT
ACGATAAAGTAAAGTTCCTTAAGCCTTTTCATATTTCTAGAAATTAGTTT
TTCCATTAAAGTCGTTTCTGCGAGTCACATTTTCATCTTGTTTTGTTAGA
TATTTGTTGAATAGTTTAATTTATTAGGTTTTGAATTGAAAAGATAAAAA
TAAAGTTTTCGATATAGGACTTGTTATTTTGTTTTTCAGCGCCGAAAATT
TTGTTTTTCAAAATATCGATTTTAAAATTAAAACAGTTTATTTTTGGGGC
TTTCTTTATTCTCCTTTCGAATATTATTAACTTTTTCTTTTATTTGCTAC
TATTTTCCAAGGCACAGCATGAAAGTCAGAAAACCCAAACAAGATAAAAA
CCAATAATTCCTTCCGATTTAAAGCTAGGTGTTACTGAAATTTCTTCGAT
ATGACTTTTACCTGGAATTTTCGGCCAGCTTGCGCCAAACTTGGAAAATT
CGGATAGAAAAATTTAGGTTAAAAGAAAATTTTGAGATGAATAAAAGGAA
GGTTCGTTTTCTTTTTAAAAGATTGATGAAATAAATTATGTATCATCGGC
GACCTTATTAAGTAAAACACAGAATGAAATCAGTTCTTTAATAAAAAATT
CCTTTCTTAATAAATCTCCTTTCGGAAAACTCGAAAAAAAAAACTTTTAA
AAGGACTTGCACGGAATGTGATACTCATCAGTCTTTCGCTAACCGTCGAC
TTGACACCTTTTAAAATTTTGAAAACGTCTTTGAATCCTTCCACGTTTGA
AATATGGTACGTCACGTCACCCTGGTCACGTTATCTCTACTCATCATTGG
TGTCGTATCCGCCACGGCTTTCGATACCGACACTAATGAAGACGATGCCG
GCAGCGAGGACATGGTTAACGAGAAACGAACGAGAATGTCTCGACTTTAC
GACTTTTATCGGAACATGCAACGGAACGGTGGTCGGGGATACCGATACGG
CGATGCATTGCATGATCGATTGTCGAGAGAACTTTACGGTGACGATGATT
TTTCGAACGATTTTGAAGATTACAAGGAAGAAGAGAGTGATGAAAACAAA
CTATAGAGAAATCTAACCCTCTAATTTGGAAATGACGAATTGATACAGCA
AATATACTTTTGATAAACAAAAATGTCTATATTTTATGATTATGTTATCG
ATCTAGATTAGTTTTGTTTTTTATATTTCACTTGTAAACTAGTAGGCAAG
ACTGAAAAGACGAGAAATGTGCTTTGTTATCGAAAATATCTAACCTGTTC
TGTCTACCTTGAAGGGGAGAAATTAGTCGTGAAAAAGTGAAGAATTTTTT
TAGGCAAGTGACAAAGTTTTCTGGCCGACTTCAAGGGTGTTGTGACAAAG
ACTTTCCGCAAAAGTGACAAAGGTTTTCATATTTTTTTTTTTATTCAATG
GACAGAAAGTAGTCCATGGGGTGGAGAGTTTTACTCCAGTCATTCGCAGG
TTACTAGGAATAGACCATTCTAGAGCTTAAAATGTTCTAAAGTTGCTGAA
ATAATCAGTTCAGATAAGCGCCCATCCAAACATTCTGAATAACATCTCTA
ACAAAGCACATCCCTATTCGATTTGCGAGGCATTTTTTTAACATTCGAAA
AATCGNGTGACAAAGTTTTTCATATTCTTGTTTTATTCAATGGACAATTC
TAGAGAAAGTAGTCCATGGGGGTGGAGAGTTTTACTCCAGTCATTCGCAG
GTTACTAGGGTACTATAATCTCAATTGTTACCCATTTCTTTTAGGAATAG
ACCATATTCTAGAGTTTTAAATGTTCTAAAGTGGCTGAAATAATAAGCGC
TCATCCAAACATTCTGAATAACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014915XLOC_014915Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026525-exon-sc0000574-1575043694:79409..79510TCONS_00026525-exon-sc0000574-1575043694:79409..79510Clytia hemisphaericaexon
TCONS_00026525-exon-sc0000574-1575043694:78597..78835TCONS_00026525-exon-sc0000574-1575043694:78597..78835Clytia hemisphaericaexon
TCONS_00026525-exon-sc0000574-1575043694:77827..77964TCONS_00026525-exon-sc0000574-1575043694:77827..77964Clytia hemisphaericaexon
TCONS_00026525-exon-sc0000574-1575043694:75689..77353TCONS_00026525-exon-sc0000574-1575043694:75689..77353Clytia hemisphaericaexon
TCONS_00026525-exon-sc0000574-1575043694:75236..75445TCONS_00026525-exon-sc0000574-1575043694:75236..75445Clytia hemisphaericaexon
TCONS_00026525-exon-sc0000574-1510915933:79409..79510TCONS_00026525-exon-sc0000574-1510915933:79409..79510Clytia hemisphaericaexon
TCONS_00026525-exon-sc0000574-1510915933:78597..78835TCONS_00026525-exon-sc0000574-1510915933:78597..78835Clytia hemisphaericaexon
TCONS_00026525-exon-sc0000574-1510915933:77827..77964TCONS_00026525-exon-sc0000574-1510915933:77827..77964Clytia hemisphaericaexon
TCONS_00026525-exon-sc0000574-1510915933:75689..77353TCONS_00026525-exon-sc0000574-1510915933:75689..77353Clytia hemisphaericaexon
TCONS_00026525-exon-sc0000574-1510915933:75236..75445TCONS_00026525-exon-sc0000574-1510915933:75236..75445Clytia hemisphaericaexon
TCONS_00026525-exon-sc0000574-1491911889:79409..79510TCONS_00026525-exon-sc0000574-1491911889:79409..79510Clytia hemisphaericaexon
TCONS_00026525-exon-sc0000574-1491911889:78597..78835TCONS_00026525-exon-sc0000574-1491911889:78597..78835Clytia hemisphaericaexon
TCONS_00026525-exon-sc0000574-1491911889:77827..77964TCONS_00026525-exon-sc0000574-1491911889:77827..77964Clytia hemisphaericaexon
TCONS_00026525-exon-sc0000574-1491911889:75689..77353TCONS_00026525-exon-sc0000574-1491911889:75689..77353Clytia hemisphaericaexon
TCONS_00026525-exon-sc0000574-1491911889:75236..75445TCONS_00026525-exon-sc0000574-1491911889:75236..75445Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000574supercontigsc0000574:75236..79510 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.176442	0.443442	0.360517	0	0	0	0	0.729243	0.243669	0.87967	0.254547	0.510528	0.394442	0.439645	0.573809	1.55716	1.14326	0.165982	0	1.52543	1.02049	0.331538	0.193521	21.7026	16.7965	0.136128	0.36113	0.127753	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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