TCONS_00008768-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008768-protein
Unique Name	TCONS_00008768-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	361

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008768-protein ID=TCONS_00008768-protein|Name=TCONS_00008768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
MFSGLYDWFWDEHNWLPEGYTWEDFESTPNITKPHAKDLYITPFLAVGIF
LFRYIFEKYAALRLCNALGIKNVSNDNKLCSNVICETAFKSSTNPDQAML
RQLSKDTGWTFQAVSRWFRRRRRAKNKTPLLRKATESCWRCFVYLVLFVY
GSYVLFRTDWLWDTKQFLIGYIRTHNLTVELRWYYYIELALYLQMMVTQL
TDTKRKDFWQQYIHHVVTILLISGSFTSGHFRFGAVIMFIHDASDFWLEG
AKVCNYAKIERLSEIFFILFAVTFYLTRWVYFPFWVLQTFMKENGRICGS
QTSYYSFPYLMLYLCFVLCVLHFYWGVLIGRMIYKFTAAGKIEKDVRSDD
DEDGSDVGDTD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004914	XLOC_004914	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008768	TCONS_00008768	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006634	TLC-dom
IPR016439	Lag1/Lac1
IPR009057	Homeobox-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0005783	endoplasmic reticulum

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006634	TRAM/LAG1/CLN8 homology domain	SMART	SM00724	lag1_27	coord: 132..338 e-value: 1.6E-41 score: 154.0
IPR006634	TRAM/LAG1/CLN8 homology domain	PFAM	PF03798	TRAM_LAG1_CLN8	coord: 133..329 e-value: 8.7E-33 score: 113.6
IPR006634	TRAM/LAG1/CLN8 homology domain	PROSITE	PS50922	TLC	coord: 132..338 score: 13.844
None	No IPR available	GENE3D	1.10.10.60		coord: 82..133 e-value: 1.5E-6 score: 27.4
None	No IPR available	CDD	cd00086	homeodomain	coord: 84..118 e-value: 0.00192264 score: 34.9117
IPR016439	Ceramide synthase component Lag1/Lac1	PIRSF	PIRSF005225	LAG1_LAC1	coord: 3..361 e-value: 4.9E-71 score: 238.1
IPR009057	Homeobox domain-like	SUPERFAMILY	46689	Homeodomain-like	coord: 84..128

Blast

[Close]

BLAST of TCONS_00008768-protein vs. Swiss-Prot (Human)
Match: CERS6 (Ceramide synthase 6 OS=Homo sapiens GN=CERS6 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.585e-74
Identity = 134/347 (38.62%), Postives = 200/347 (57.64%), Query Frame = 0

Query:    3 SGLYDWFWDEHNWLPEGYTWEDFESTPNITKPHAKDLYITPFLAVGIFLFRYIFEKYAALRLCNALGIKNVSNDNKLCS-NVICETAFKSST-NPDQAMLRQLSKDTGWTFQAVSRWFRRRRRAKNKTPLLRKATESCWRCFVYLVLFVYGSYVLFRTDWLWDTKQFLIGYIRTHNLTVELRWYYYIELALYLQMMVTQLTDTKRKDFWQQYIHHVVTILLISGSFTSGHFRFGAVIMFIHDASDFWLEGAKVCNYAKIERLSEIFFILFAVTFYLTRWVYFPFWVLQTFMKENGRICGSQTSYYSFPYLMLYLCFVLCVLHFYWGVLIGRMIYKFTAAGKIEKDVR 347
            +G+  WFW+E  WLP   TW D ++T   T P A+DLY+   LA  IF+ R IFE++ A     AL I+  +N  ++   N I E  F + T +PD+  L  LSK   W  +++ RWFR+RR  + K   L +  ES WR   YL +F YG   L +T WLW+T+     Y     LT +L +YY +EL+ Y  +M +Q TD KRKDF   ++HH+V+I LI+ S+ +   R G +++ +HD++D  LE AK+ NYAK +++ ++ F++FAV F  TR   FP WVL T + E+  I G   S++ F  L+L +  + C    +W  LI ++  K  + GK+ KD R
Sbjct:    2 AGILAWFWNERFWLPHNVTWADLKNTEEATFPQAEDLYLAFPLAFCIFMVRLIFERFVAKPCAIALNIQ--ANGPQIAPPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRN-QEKPSTLTRFCESMWRFSFYLYVFTYGVRFLKKTPWLWNTRHCWYNY-PYQPLTTDLHYYYILELSFYWSLMFSQFTDIKRKDFGIMFLHHLVSIFLITFSYVNNMARVGTLVLCLHDSADALLEAAKMANYAKFQKMCDLLFVMFAVVFITTRLGIFPLWVLNTTLFESWEIVGPYPSWWVFNLLLLLVQGLNC----FWSYLIVKIACKAVSRGKVSKDDR 340

The following BLAST results are available for this feature:

BLAST of TCONS_00008768-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008768-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CERS6	6.585e-74	38.62	Ceramide synthase 6 OS=Homo sapiens GN=CERS6 PE=1 ...	[more]

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TCONS_00008768-protein (polypeptide) - C. hemisphaerica