TCONS_00008705-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008705-protein
Unique Name	TCONS_00008705-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	556

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008705-protein ID=TCONS_00008705-protein|Name=TCONS_00008705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp
MIRKLQMVSIAGVFGFLFILYYISNHKVLLNNDKDHSLVNQQVFDTIKSN
KEIDLEIGKKTTAESRTFPVEITRPERAVQQVQINTNNQKTAQGIKYKEN
LYIPFSFLEEYYGHFGQYVSSNSFKWYHVNPAYVDPETVYPKYNYKVEYL
SFHTSNVPKRARVKCICAKYEVPITTQWDPKGYYYPTQIAQYGLSFISRY
YLESKSILQKKLTFPEDSGKSTITSVPKELFVIKIKFKEEPQNFEIKVLG
DNEVQYTLTYKTDNSQILRSQDGKTITHGLGKLTKRTLLTRDLSVDLLKG
LSFIEGGRNGKTVDIMLKKIISITITKVEGVSELLLLDKDFVSYFMAAAD
WFVKFQDESGGWKVNVKRKICNRMEAAPGWYSAMGQGQAISLLTRVYLHT
KKEKYLDAALKATLVFHRTSTENGVKADLFGLPWYEEYPTQAPSYVLNGF
MFSLFGLYDLWKVAGDSRGGTAQHLFNDGFTTLEKMIPLYDNGHGTFYDL
RHLSIPGISPNRARWQYHRVHLEQLTALLSIKESKVLKEVLQRWTGYVSG
ILSRHN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004891	XLOC_004891	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008705	TCONS_00008705	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR010598	C5-epim

Vocabulary: **Molecular Function**
Term	Definition
GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006024	glycosaminoglycan biosynthetic process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006024	glycosaminoglycan biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010598	D-glucuronyl C5-epimerase	PFAM	PF06662	C5-epim_C	coord: 356..545 e-value: 7.1E-63 score: 211.4
None	No IPR available	GENE3D	1.50.10.20		coord: 11..548 e-value: 2.0E-11 score: 43.0

Blast

[Close]

BLAST of TCONS_00008705-protein vs. Swiss-Prot (Human)
Match: GLCE (D-glucuronyl C5-epimerase OS=Homo sapiens GN=GLCE PE=1 SV=3)

HSP 1 Score: 315.079 bits (806), Expect = 6.661e-100
Identity = 187/517 (36.17%), Postives = 280/517 (54.16%), Query Frame = 0

Query:   80 QQVQINTNNQKTAQGIKYKENLYIPFSFLEEYYGHFGQYVSSNSFKWYHVNPAYVDPETVYPKYNYKVEYLSFHTSNVPKRARVKCICAKYEVPITTQWDPKGYYYPTQIAQYGLSFISRYYLESKSILQKKLTFPE-DSGKSTITSVPKELFVIKIKFKEEPQN--------------------------FEIKVLGDNEVQYTL----------TYKTDNSQILRSQDGKTITHGLGKLTKRTLLTRDLSVDLLKGLSFIEGGRNGKTVDIMLKKIISITITKVEG-VSELLLLDKDFVSYFMAAADWFVKFQDESGGWKVNVKRKICNRMEA-APGWYSAMGQGQAISLLTRVYLHTKKEKYLDAALKATLVFHRTSTENGVKADLFGL-PWYEEYPTQAPSYVLNGFMFSLFGLYDLWKVAGDSRGGTAQHLFNDGFTTLEKMIPLYDNGHGTFYDLRHLSIPGISPNRARWQYHRVHLEQLTALLSIKESKVLKEVLQRWTGYVSGILSRHN 556
            +++    N++ T +G +    +++PF+++E+Y+  +G+ V  + +  +  + +Y         Y+    ++SF   NV  R RVKCI     VP++TQW P+GY+YP QIAQYGLS  S+   E    ++   T  + D  K    +VPK  F+  +  K    N                          F++K L +  V   L           +   N+Q++  ++ + I +G+G  T  + +TRDL  DL KG+  +   +  K   IM KK++ + I K +G +  + +     ++ F AA+DW V+ QDE GGW + V RK+    ++  PGWYSAM QGQAIS L R YL TK   +L++AL+AT  +   S ++GVKA       WYEEYPT   S+VLNGFM+SL GLYDL + AG+  G  A+ L+  G  +L+ M+PLYD G GT YDLRH  + GI+PN ARW YH  H+ QL  L +I ES V KE ++RW  Y+ G  ++HN
Sbjct:  105 EEIDCLINDEHTIKGRREGNEVFLPFTWVEKYFDVYGKVVQYDGYDRFEFSHSYSKVYAQRAPYHPDGVFMSFEGYNVEVRDRVKCISGVEGVPLSTQWGPQGYFYPIQIAQYGLSHYSKNLTEKPPHIEVYETAEDRDKNKPNDWTVPKGCFMANVADKSRFTNVKQFIAPETSEGVSLQLGNTKDFIISFDLKFLTNGSVSVVLETTEKNQLFTIHYVSNAQLIAFKE-RDIYYGIGPRTSWSTVTRDLVTDLRKGVG-LSNTKAVKPTKIMPKKVVRL-IAKGKGFLDNITISTTAHMAAFFAASDWLVRNQDEKGGWPIMVTRKLGEGFKSLEPGWYSAMAQGQAISTLVRAYLLTKDHIFLNSALRATAPYKFLSEQHGVKAVFMNKHDWYEEYPTTPSSFVLNGFMYSLIGLYDLKETAGEKLGKEARSLYERGMESLKAMLPLYDTGSGTIYDLRHFML-GIAPNLARWDYHTTHINQLQLLSTIDESPVFKEFVKRWKSYLKGSRAKHN 617

The following BLAST results are available for this feature:

BLAST of TCONS_00008705-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008705-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GLCE	6.661e-100	36.17	D-glucuronyl C5-epimerase OS=Homo sapiens GN=GLCE ...	[more]

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TCONS_00008705-protein (polypeptide) - C. hemisphaerica