TCONS_00026475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026475
Unique NameTCONS_00026475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026475 ID=TCONS_00026475|Name=TCONS_00026475|organism=Clytia hemisphaerica|type=transcript|length=1484bp
GTATAATTACctcaaaatacccctaaaatatgtccaaaattagttcataG
TGTTTTATTGAGCctagattcaaagatatctaaacaaaaaacttttttgt
gaaggaaaataagagagaattccaaaaactatctaccaagtATAAACTGA
TAAtgttgatattcttatagagctcagagacagagatagaacagcaatag
accttttcataaattacgtcacgaacatcacttgcctcgctttgaaatta
ttgccatggtgattaactcccagcggattttatcaaaaccactttctatt
tgtaaaaaatcatttaatgtctcaagggacataatcaccatggtaattgt
ttgaatacgaggcaagtgatgttcatgacgtaatttatgaaaaggtctat
taactgaaaagacaatgctgTAAACATTCCAGctgcggctttcttatact
atggtgagACTAGCCTAACTTTTTTATGAGCTTCGATCGTTtcgatcttt
ttttaaaaagatgaaTTACTTGTAAACGATTTTTAAATACTTAAAGTAAA
ACTGACTATTTCTAATTGTGGACAGACCTACAAACTCTGACAAGTAacat
tttaatatattttgctCACGACTTAGTACAGAAAGACCAAATTGACCTAT
TAAGATGACGGATGACGGACATTACATGACGgcatttttgAACTTGTTGG
GGTATTTTTGGCGTTTGGAATTGCAGTAATCTTTGAAACAGAAGATGGTT
GCCATAAATTTGGAGATGGGGCGAGAAGGATTCACCTTCTATTTCACGAC
CAAACGGCCGAGTATTGTTGTCTTGTCCAATCTTTCCCATTCGTGGAAAC
AGAACCGTGCAGCCACAACATCTCTTGTGGCGCGAATCTTACCACAAGTT
TCTTTTTCACTTGCCCTAATTGTAACTTGAAATATCACAATTATTGTGCT
GAACATGACAGTGATTGTGGTTGTGCATCCGAAGCAAGTGTAACACGAAC
GATTAAAGAAAATCTACTTCAAGGCGAAACTTGTCAAATAGACCCACTGT
TACTTTTCAAACGAGATAGAAAACtagagggTTACATCGTCGATATTTTA
AGCGGAACTTATCCAGGTCACCGTACAAAAATGGTCACAAAGTTGGTAAA
TAATCCTGATGCAGAAGAGAATATCTTTTTCATGAAGACAATGCCTTCTT
CCAAAAGGAAATTTGCTGTCGATTGTATCAAGTCATCATTAAATGTAAAA
GCAAAGAAGCTTATCGAACAACGCTTTTCGGTTGACATGGCGGATGCGAT
AGTTGAAAGATGGTTGATGCCAGAGGTTCTCGTGGAATTGATTAAAAGGA
TGGCTAGAGGAAAATGCACCAATCTAATGATAGAACGGTCAATGTATCGC
TTAAGCACTGGATTGGAATAGTTAAACGTTTACCGGGTAACCTACGAAAC
ACTTTTGACTTGTAGAGGATGAACAAAATTacta
Run BLAST on NCBI

transcript from alignment at sc0000573:55149..59348-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026475 ID=TCONS_00026475|Name=TCONS_00026475|organism=Clytia hemisphaerica|type=transcript|length=4200bp|location=Sequence derived from alignment at sc0000573:55149..59348- (Clytia hemisphaerica)
GTATAATTACCTCAAAATACCCCTAAAATATGTCCAAAATTAGTTCATAG
TGTTTTATTGAGCCTAGATTCAAAGATATCTAAACAAAAAACTTTTTTGT
GAAGGAAAATAAGAGAGAATTCCAAAAACTATCTACCAAGTATAAACTGA
TAATGTTGATATTCTTATAGAGCTCAGAGACAGAGATAGAACAGCAATAG
ACCTTTTCATAAATTACGTCACGAACATCACTTGCCTCGCTTTGAAATTA
TTGCCATGGTGATTAACTCCCAGCGGATTTTATCAAAACCACTTTCTATT
TGTAAAAAATCATTTAATGTCTCAAGGGACATAATCACCATGGTAATTGT
TTGAATACGAGGCAAGTGATGTTCATGACGTAATTTATGAAAAGGTCTAT
TAACTGAAAAGACAATGCTGTAAACATTCCAGCTGCGGCTTTCTTATACT
ATGGTGAGACTAGCCTAACTTTTTTATGAGCTTCGATCGTTTCGATCTTT
TTTTAAAAAGATGAATTACTTGTAAACGATTTTTAAATACTTAAAGTAAA
ACTGACTATTTCTAATTGTGGACAGACCTACAAACTCTGACAAGTAACAT
TTTAATATATTTTGCTCACGACTTAGTACAGAAAGACCAAATTGACCTAT
TAAGATGACGGATGACGGACATTACATGACGGTAACACTTTGTTTATTCA
AAGCTGACAAATCACTTTAATGGGATTGAATTTCAGTGCAAAATTTTATC
ATTTAGTGGGGACATTTTGCAGAAATGAAACATTGGGGTGATGTACCAAT
GAACTTATTCTNCACTTTATTTATTCAAAGCTGACAAATCACTTTAATGG
GATTGAATTTCAGTGCAAAATTTTATCATTTAGTGGGGACATTTTGCAGA
AGTGAAACATTGGGGTGATATACCAATGAACTTATTCATACTAACAAAAT
ATACACACCCCTGTATCAGATACTTAAATTTTCAACGGTACAGCTATTAA
CAATAAACCTATACAAAACTTGCAAACAAAACTGCCGCTCAGCATGGAGC
AGCATGGAGGTATAAAGAAAAACAGGAGTTGAATTTGTCGGTAATTGGTC
GTGAAAATCTTTTGATTTCTTTTATGGAATAAATCAAAAGAAATTCTAGG
CTCTCCCGATAAAATATGACTTTTTAGTAGAACTCAAGTTTGCTCTTAAA
ATTTTCAATATCAGCATCGAAGATTTCTAGCCTTCTAATATTAGAGAATA
AAATAAATTTAGCCCCAAGAAATAAGTTTGCGTTCAATTTTGCCATCCTT
TTGTTTTGAAAAGATATTTTCTCCAGCCAGAAAAAAAAAGTTCTTTATAA
GCATACAAAATTTCATACCCTATTTGTAGACAAAAAGTCGCTGGAGAATT
TTAGCCAAGATTTCACATAGTTCGCCCCCCCCCTTTCTTAAGGGGGGATG
ACACCTTCCGGAAAACCCAAGAATGGAAGGGATCACAAATTTTCCAGTGG
AAGGGGAGATAGCAAGAAGGGGGATTACATATATTGTAGATTATTTTCCA
GCAAATAGCATATTTCTCCTGTTTCTTCATACCTCCATGCACTCAGCCAC
CATAGTTGAAAAATAAAGGAATATTAAATCTCCCTTGCTTTTTATTTCAG
GCATTTTTGAACTTGTTGGGGTATTTTTGGCGTTTGGAATTGCAGTAATC
TTTGAAACAGAAGATGGTTGCCATAAATTTGGAGATGGGGCGAGAAGGAT
TCACCTTCTATTTCACGACCAAACGGCCGAGTATTGTTGTCTTGTCCAAT
CTTTCCCATTCGTGGAAACAGAACCGTGCAGCCACAACATCTCTTGTGGC
GCGAATCTTACCACAAGTTTCTTTTTCACTTGCCCTAATTGTAACTTGAA
ATATCACAATTATTGTGCTGAACATGACAGTGATTGTGGTTGTGCATCCG
AAGCAAGTGTAACACGAACGTAAGCTTTAATTACCTTAATCCCATTAATT
TTCGTTCGTCTTTTTTTCATTTTCTTTTTCAAAATTTTGATTTTTAGGGG
CGTGGTCACCAATCTTAGCCCCAAAACGAGGCTAAAAACTTTGTTTTTCC
ATCATTTTTACAATTTGGCCTACAAGTGACTTTAAAGATACTGAAGTTGA
ACCTTTGCGGTTAGCACGTTCGACAGTATTTTGAGGGAACGCTATTACAT
TGTTTCAATGTTTTTTTTATTGACCCGTTAGGCCAAATTGATTTCAAACA
TTTTCGTTTTAATGAATTACACTTTTTCTTTGCCATCTTTTATACGTTTG
ACAAGTTAGGATGGATATTTTCTTATGGGATTAATTTTTTGCCATCTTTT
CTTGAAATTATGATTTCAGAAGGGATAGGGTAATGTTACTATCTTGAGAG
ATTTAATTGTGCGAATTGGCAACATGTTACCTTTACTTAAAATTATTTTG
GATTTCAGGATTAAAGAAAATCTACTTCAAGGCGAAACTTGTCAAATAGA
CCCACTGTTACTTTTCAAACGAGATAGAAAACTAGAGGTAATTTTTTTTA
TCAGAACTTTTGATCAATTTATCAACTTTCATTTCTGTGTCACGATACAA
GTTTGGTATACATCTTTTTATGCTTCAGGTCTAGGAATTCAAATTTACAC
CGAATTTAATTTCTTTTTTATTTAGGGTTACATCGTCGATATTTTAAGCG
GAACTTATCCAGGTCACCGTACAAAAATGGTCACAAAGTTGGTAAATAAT
CCTGATGCAGAAGAGAATATCTTTTTCATGAAGACAATGCCTTCTTCCAA
AGTAAGTTTTCATTAAATCTGTCTTGTAATTAGTAAATTATTGAACGAAA
ACGGGTATTTAAACCGTGTAGAATTATTGCCAATATTCGTTATCGCTCAA
GCTTTTTCATTTGTATATGTTTTTCATATGATATACTATGATGTGTTAAT
ATTTTTTACCTTTGACGTTTAGAGGAAATTTGCTGTCGATTGTATCAAGT
CATCATTAAATGTAAAAGCAAAGAAGCTTATCGAACAACGCTTTTCGGTT
GACATGGCGGATGCGATAGTTGAAAGATGGTTGATGCCAGAGGTTCGTAC
CACCACTATCATTCTAATGTCATTTCAAGTGCAACTCAACTCCTCTGGGC
ATTTTTAGTTGAAAATTTTTTAATTGACAGTCCGTACTTATTTAACATTT
CTCTCCAAGGAAAAAAGATATAATTAAAAGTAATACCTCGTTGAAAAGGT
AATTTTGAGTCCAAATGGGCGATAAATTGCAAAAAATAGTCGAAGTGAAC
CTTTTTCGGAGGGCTGTAACTTTTGAACCAAAAGAGATATGAAAAATCTG
AATACATTTGAAATCAACGGAATTCAAAGTTTTGGAAAAGTATGAAATAA
AAGTTTTTTTCAAGTAGAAAAAATCTTCACTTTTTTCTTCTTCATTTTTC
ATCTTCATTTTCACATTTTCAGAAAAATCTATAAAGCTTACAAAAAGCGT
CTTGAAATGATCTTTTCAACGAGGTATTACTTTTTTCCTTCAAGAGCAAT
GTTTAGAAGTACGGACTGCCAATTTTTTGGAACACACTTTAAATGTATAT
ACAGTTGACGCCCTCTAATTCGACGTTCTACTATTTGATAAGCTCCCTTG
TTCGATGAAATTTAAAGTCCCTGTCAACAAAATACTCGCATAAACGACGC
TCTACTATTCGACACTCTCCCTTATTAGATGAAAATCCAATTCCCCTTGA
AGATCGAATTAGAGAGCGTCAACTGTAATGTTAATTTATCAAATCATTTA
AAACATTTTGAAGTTATGGTTAGATCGAGTATATTAATTTTTATGTCAAT
CCCGGTCCTAATCTTAGTAATCTACTTTATAAATAGCTTTGTTTAGAATC
GTCTTCACTCTAGGCCAATTTATAATTTTCGCATGGAAGTTTAATTTCAT
TATTTTTAATTTCCCGATCGAATCATTAAAGTGTACTGCACTTGGATTTT
CATTATAAAACATGTCATGTTATTTTGTTTTGTGTTTGCAGGTTCTCGTG
GAATTGATTAAAAGGATGGCTAGAGGAAAATGCACCAATCTAATGATAGA
ACGGTCAATGTATCGCTTAAGCACTGGATTGGAATAGTTAAACGTTTACC
GGGTAACCTACGAAACACTTTTGACTTGTAGAGGATGAACAAAATTACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014878XLOC_014878Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026475-exon-sc0000573-1575043694:58668..59348TCONS_00026475-exon-sc0000573-1575043694:58668..59348Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1575043694:57380..57698TCONS_00026475-exon-sc0000573-1575043694:57380..57698Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1575043694:56812..56890TCONS_00026475-exon-sc0000573-1575043694:56812..56890Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1575043694:56548..56673TCONS_00026475-exon-sc0000573-1575043694:56548..56673Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1575043694:56257..56376TCONS_00026475-exon-sc0000573-1575043694:56257..56376Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1575043694:55149..55307TCONS_00026475-exon-sc0000573-1575043694:55149..55307Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1510915933:58668..59348TCONS_00026475-exon-sc0000573-1510915933:58668..59348Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1510915933:57380..57698TCONS_00026475-exon-sc0000573-1510915933:57380..57698Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1510915933:56812..56890TCONS_00026475-exon-sc0000573-1510915933:56812..56890Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1510915933:56548..56673TCONS_00026475-exon-sc0000573-1510915933:56548..56673Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1510915933:56257..56376TCONS_00026475-exon-sc0000573-1510915933:56257..56376Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1510915933:55149..55307TCONS_00026475-exon-sc0000573-1510915933:55149..55307Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1491911889:58668..59348TCONS_00026475-exon-sc0000573-1491911889:58668..59348Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1491911889:57380..57698TCONS_00026475-exon-sc0000573-1491911889:57380..57698Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1491911889:56812..56890TCONS_00026475-exon-sc0000573-1491911889:56812..56890Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1491911889:56548..56673TCONS_00026475-exon-sc0000573-1491911889:56548..56673Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1491911889:56257..56376TCONS_00026475-exon-sc0000573-1491911889:56257..56376Clytia hemisphaericaexon
TCONS_00026475-exon-sc0000573-1491911889:55149..55307TCONS_00026475-exon-sc0000573-1491911889:55149..55307Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000573supercontigsc0000573:55149..59348 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.313122	0.727209	0.734553	0.430325	1.62323	1.35423	3.18528	1.854	1.05161	1.83751	1.74534	1.51316	2.06315	1.20073	2.18602	1.95043	2.23589	3.12101	2.79254	1.89344	2.65944	2.37838	1.49952	1.78765	1.46397	1.42052	5.16366	2.47791	2.38274	2.25971
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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