TCONS_00026487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026487
Unique NameTCONS_00026487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026487 ID=TCONS_00026487|Name=TCONS_00026487|organism=Clytia hemisphaerica|type=transcript|length=327bp
TATAATTACAAACAATTACATcatgctttttaaaaattcatttatGATTC
TCTCATATCTCTAAGTTCAACAAGCAAGTCATGGGGGCCCCGGCGAGACA
TTTTGAATGAGGGACCTGGTTTTGTCCGAATTGCATCAATTACTCCCTTC
CTTTTCCTGTTGAATTAAACATTAATAACTCTAATGGTGATGCTCCTGGG
GACATGAGTGATAAACTTCGATCCTTAATATCTGATCTCAACAAGGTCGT
CACTAGCCTTAGTGACGAAATTGATGATGAGCTTGAATTTCAGTTTCAAG
CTCATAGCTGTAGTTATGTTGACTGNN
Run BLAST on NCBI

transcript from alignment at sc0000573:39085..39411

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026487 ID=TCONS_00026487|Name=TCONS_00026487|organism=Clytia hemisphaerica|type=transcript|length=327bp|location=Sequence derived from alignment at sc0000573:39085..39411 (Clytia hemisphaerica)
NNCAGTCAACATAACTACAGCTATGAGCTTGAAACTGAAATTCAAGCTCA
TCATCAATTTCGTCACTAAGGCTAGTGACGACCTTGTTGAGATCAGATAT
TAAGGATCGAAGTTTATCACTCATGTCCCCAGGAGCATCACCATTAGAGT
TATTAATGTTTAATTCAACAGGAAAAGGAAGGGAGTAATTGATGCAATTC
GGACAAAACCAGGTCCCTCATTCAAAATGTCTCGCCGGGGCCCCCATGAC
TTGCTTGTTGAACTTAGAGATATGAGAGAATCataaatgaatttttaaaa
agcatgATGTAATTGTTTGTAATTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014888XLOC_014888Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026487-exon-sc0000573-1491911889:39085..39411TCONS_00026487-exon-sc0000573-1491911889:39085..39411Clytia hemisphaericaexon
TCONS_00026487-exon-sc0000573-1510915933:39085..39411TCONS_00026487-exon-sc0000573-1510915933:39085..39411Clytia hemisphaericaexon
TCONS_00026487-exon-sc0000573-1575043694:39085..39411TCONS_00026487-exon-sc0000573-1575043694:39085..39411Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000573supercontigsc0000573:39085..39411 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.787408	0.406873	0.752334	2.81234	0.926944	0	0.900907	0.361861	0	0.997481	0	1.06375	0.199949	0.316084	0.556183	0.28469	0	0.693983	1.24377	0.33443	0.771785	1.76238	0.344713	0.289741	0	0	0.705657	0.879915	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top