TCONS_00026459 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026459
Unique NameTCONS_00026459
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026459 ID=TCONS_00026459|Name=TCONS_00026459|organism=Clytia hemisphaerica|type=transcript|length=487bp
GCTTaataaagtaaaaagaaaatctaCAAGATGGGTATCCTAATGACAac
aaatgtaaataaaaaagtttaaaagttcaCAAGAAGACAATCAGGTCAAA
ATACACCAAGTCAAAATTATTTGATACAAAATGTCTAAGCTTCAGTGTAT
ATAGCTTTAGCCACCATTTTATTATTTACTTTGATCTTGAAATTCTTCAT
GGAGAgagttttctttttgatatcAAGCTCTCCAGGCAGCTCATCAAACA
ATGTTACCATGACTTCTTCAAAGATAGTTACTGTAATTTCTTCGCCATTA
ACAAGCAAAACGTCAACTGTAGCCACATGAGTTTCCTTGGAGGTATCTCT
CATAAATTGAATTGAGACTTCTCTCTTACAATTGGAACATGAACACATGC
CAAACTGGGGGTCGATTGCGAGTTTTCTCTTGCATTTTCTACAtggaaaa
aacgattctaagtGGATCGCTGCAACCTGGTTACATG
Run BLAST on NCBI

protein sequence of TCONS_00026459-protein

>TCONS_00026459-protein ID=TCONS_00026459-protein|Name=TCONS_00026459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
CNQVAAIHLESFFPCRKCKRKLAIDPQFGMCSCSNCKREVSIQFMRDTSK
ETHVATVDVLLVNGEEITVTIFEEVMVTLFDELPGELDIKKKTLSMKNFK
IKVNNKMVAKAIYTEA
Run BLAST on NCBI

transcript from alignment at sc0000572:129154..129640

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026459 ID=TCONS_00026459|Name=TCONS_00026459|organism=Clytia hemisphaerica|type=transcript|length=487bp|location=Sequence derived from alignment at sc0000572:129154..129640 (Clytia hemisphaerica)
CATGTAACCAGGTTGCAGCGATCCacttagaatcgttttttccaTGTAGA
AAATGCAAGAGAAAACTCGCAATCGACCCCCAGTTTGGCATGTGTTCATG
TTCCAATTGTAAGAGAGAAGTCTCAATTCAATTTATGAGAGATACCTCCA
AGGAAACTCATGTGGCTACAGTTGACGTTTTGCTTGTTAATGGCGAAGAA
ATTACAGTAACTATCTTTGAAGAAGTCATGGTAACATTGTTTGATGAGCT
GCCTGGAGAGCTTgatatcaaaaagaaaactcTCTCCATGAAGAATTTCA
AGATCAAAGTAAATAATAAAATGGTGGCTAAAGCTATATACACTGAAGCT
TAGACATTTTGTATCAAATAATTTTGACTTGGTGTATTTTGACCTGATTG
TCTTCTTGtgaacttttaaacttttttatttacatttgtTGTCATTAGGA
TACCCATCTTGtagattttctttttactttattAAGC

Coding sequence (CDS) from alignment at sc0000572:129154..129640

>TCONS_00026459 ID=TCONS_00026459|Name=TCONS_00026459|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0000572:129154..129640 (Clytia hemisphaerica)
TGTAACCAGGTTGCAGCGATCCacttagaatcgttttttccaTGTAGAAA
ATGCAAGAGAAAACTCGCAATCGACCCCCAGTTTGGCATGTGTTCATGTT
CCAATTGTAAGAGAGAAGTCTCAATTCAATTTATGAGAGATACCTCCAAG
GAAACTCATGTGGCTACAGTTGACGTTTTGCTTGTTAATGGCGAAGAAAT
TACAGTAACTATCTTTGAAGAAGTCATGGTAACATTGTTTGATGAGCTGC
CTGGAGAGCTTgatatcaaaaagaaaactcTCTCCATGAAGAATTTCAAG
ATCAAAGTAAATAATAAAATGGTGGCTAAAGCTATATACACTGAAGCTTA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014865XLOC_014865Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026459-proteinTCONS_00026459-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026459-exon-sc0000572-1491911889:129154..129640TCONS_00026459-exon-sc0000572-1491911889:129154..129640Clytia hemisphaericaexon
TCONS_00026459-exon-sc0000572-1510915933:129154..129640TCONS_00026459-exon-sc0000572-1510915933:129154..129640Clytia hemisphaericaexon
TCONS_00026459-exon-sc0000572-1575043694:129154..129640TCONS_00026459-exon-sc0000572-1575043694:129154..129640Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000572supercontigsc0000572:129154..129640 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.328146	0	0.107541	0	0.129294	0.0849927	0	0	0	0.222046	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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