TCONS_00006805-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006805-protein
Unique NameTCONS_00006805-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length926

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006805-protein ID=TCONS_00006805-protein|Name=TCONS_00006805-protein|organism=Clytia hemisphaerica|type=polypeptide|length=926bp
MDKKTEAEENGTQEKENTEEKSNFIVRCTNFVNTALETGFSRFGLLVGTH
PGKTIAVTLIFALLCLSGLVRFEQESRGEKLWVEQSSQYVTDQNWVRDHF
PTRIRYIQILLKGSDVLTPNGLKQMLNVDKMVQGMFANDSNSALHWKNRR
FDTPTQSLIELWPGLDAAAVDSMTKDDILRIVNEDPLISPIRNRNISIDS
YLSGISRNSTRHIVQASVARMTYFQKFDVVLDKSTGMWKDEYGTQWEKEF
AVVIRQTSFPGYEVFYSTLESFVKAGLDAIGNDYGLLFSGYALIITYVAF
QLGKFSRLKHKVWLAAVGIIMVGLAFAVAMGLCAGAGVIYGPVHSILPFL
MLGIGVDDLFVIIQTWDNVCMEPTKIQESVPEKISRTMKHAGVAITVTSF
TDICAFLIGATTVLPALRSFCIYAGVGILMLYIYAATFFVAFLTIDAKRQ
EMNRDACCCYRLPEDWQPMACSNKRFLNDVLKRFGKILLTIPGKVIVVLL
TGTLFGFGLYGILQLDQNFDPDWFLPRDSDEFLFRQNFRQFFPSHGAKTA
VYVGKVDYFAEQKNLHALYDKMRWDSTIQESSVVSWYDHFITHLKNDPVK
KTYLTNENIVSNETFFYDNLRQFLDGDGLAYKSSFDYNNNTMEIKGTRFL
MSHKNIMETKKQIEAMDNIRQKATSVYFQSSKTTFSKTAFVFGDEYIRWQ
TNRIVGEELFRNLILAGVCVFLVTLFLIANLWTCLMVLMCVGFSLTNICG
YMYYWDLSIDMIISTILVISLGFAVDYSGHIGHAFMAARKGTRNDRALTA
ISEIGPAVLNGGISTFLAFCLLAGSKSYAFQTFFKVFFLVVSIGLFHGLV
FLPVLLSIIGPRAYLETESPTPEKANEEECSNSSTSSTTEGDSTPKKNKV
HVEYKSCSEGKEDGNIGIENLNYVTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003805XLOC_003805Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006805TCONS_00006805Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003392Ptc/Disp
IPR000731SSD
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..21
NoneNo IPR availableGENE3D1.20.1640.10coord: 632..863
e-value: 2.4E-36
score: 124.5
NoneNo IPR availableGENE3D1.20.1640.10coord: 237..457
e-value: 9.4E-33
score: 112.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 867..900
NoneNo IPR availableSUPERFAMILY82866Multidrug efflux transporter AcrB transmembrane domaincoord: 245..445
NoneNo IPR availableSUPERFAMILY82866Multidrug efflux transporter AcrB transmembrane domaincoord: 664..860
IPR003392Protein patched/dispatchedPFAMPF02460Patchedcoord: 116..859
e-value: 1.6E-96
score: 324.2
IPR000731Sterol-sensing domainPROSITEPS50156SSDcoord: 283..445
score: 36.961

Blast
[Close]
BLAST of TCONS_00006805-protein vs. Swiss-Prot (Human)
Match: NPC1 (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 3.249e-51
Identity = 167/702 (23.79%), Postives = 320/702 (45.58%), Query Frame = 0 
Query:  239 KDEYGTQWEKEFAVVIRQTSFPGYEVFYSTLESFVKAGLDAIGNDYGLLFSGYALIITYVAFQLGKFSRLKH-----KVWLAAVGIIMVGLAFAVAMGLCAGAGV-IYGPVHSILPFLMLGIGVDDLFVIIQTWDNVCMEPTKIQ-ESVPEKISRTMKHAGVAITVTSFTDICAFLIGATTVLPALRSFCIYAGVGILMLYIYAATFFVAFLTIDAKRQEMNR-DACCCYRLPEDWQPMACSNKRFLNDVLKRFGKILLTIPGKVIVVLLTGTLFGFGLYGILQLDQNFDPDWFLPRDSDEFLFRQNFRQFFPSHGAKTAVYVGKVDY-FAEQKNLHALYDKMRW--DSTIQES--------------SVVSWYDHFITHLK-----------NDPVKKTYLTNENIVSNETFFYDNLRQFLDGDGLAYKSSFDYNN-----------------NTMEIKGTR----FLMSHKNIMETKKQ-IEAMDNIRQKATSVYFQSSKTTFSKTAFVFGDEYIRWQTNRIVGEELFRNLILAGVCVFLVTLFLI-ANLWTCLMVLMCVGFSLTNICGYMYYWDLSIDMIISTILVISLGFAVDYSGHIGHAFMAARKGTRNDRALTAISEIGPAVLNG-GISTFLAFCLLAGSKSYAFQTF-FKVFFLVVSIGLFHGLVFLPVLLSIIGPRAYLETESPTPEKANEEE 879
            K +    WEKEF   ++    P   + ++   S          +D   +   YA++  Y++  LG     +      KV L   GI++V  + A ++G+ +  G+ +   V  ++PFL+L +GVD++F+++Q +        ++Q E++ +++ R +     ++ ++SF++  AF +GA +V+PA+ +F ++AG+ + + ++   T FV+ L +D KRQE NR D  CC R  ED   +  S           +  +LL    + IV+ +   +  F +  + ++D   D    +P DS    + ++  Q+   H      +V +  + +   K  + +   M    DS +Q+               +  SW D +   +K            D      + +   V       +  ++   GD + +   F  +N                 N +   GTR    + M++  +++T    I+A+   R  A++V         +   F +   Y+ ++    + ++   NL ++   +FLVT+ L+   LW+ +++   +   L N+ G M+ W +S++ +    LV+S G +V++  HI  AF  + KG+R +RA  A++ +G +V +G  ++ F    +LA +KS  FQ F F+++  +V +G  HGL+FLPVLLS IGP         T E+    E
Sbjct:  576 KLQRAQAWEKEFINFVKNYKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQ----RDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDGTSVQASESCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYL--HAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRVDNITDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSVNKAKSCATEERYKGTE 1271
The following BLAST results are available for this feature:
BLAST of TCONS_00006805-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPC13.249e-5123.79Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE... [more]
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