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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006805 ID=TCONS_00006805|Name=TCONS_00006805|organism=Clytia hemisphaerica|type=transcript|length=3762bpRun BLAST on NCBI protein sequence of TCONS_00006805-protein >TCONS_00006805-protein ID=TCONS_00006805-protein|Name=TCONS_00006805-protein|organism=Clytia hemisphaerica|type=polypeptide|length=926bp MDKKTEAEENGTQEKENTEEKSNFIVRCTNFVNTALETGFSRFGLLVGTHRun BLAST on NCBI transcript from alignment at sc0000070:635243..650934- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006805 ID=TCONS_00006805|Name=TCONS_00006805|organism=Clytia hemisphaerica|type=transcript|length=15692bp|location=Sequence derived from alignment at sc0000070:635243..650934- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000070:635243..650934- >TCONS_00006805 ID=TCONS_00006805|Name=TCONS_00006805|organism=Clytia hemisphaerica|type=CDS|length=58401bp|location=Sequence derived from alignment at sc0000070:635243..650934- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006805 vs. Swiss-Prot (Human)
Match: NPC1 (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2) HSP 1 Score: 191.815 bits (486), Expect = 3.115e-49 Identity = 173/701 (24.68%), Postives = 322/701 (45.93%), Query Frame = 2
Query: 986 KDEYGTQWEKEFAVVIRQTSFPGYEVFYSTLESFVKAGLDAIGNDYGLLFSGYALIITYVAFQLGKFSRLKH-----KVWLAAVGIIMVGLAFAVAMGLCAGAGV-IYGPVHSILPFLMLGIGVDDLFVIIQTWDNVCMEPTKIQ-ESVPEKISRTMKHAGVAITVTSFTDICAFLIGATTVLPALRSFCIYAGVGILMLYIYAATFFVAFLTIDAKRQEMNR-DACCCYRLPEDWQPMACSNKRFLNDVLKRFGKILLTIPGKVIVVXXXXXXXXXXXXXILQLDQNFDPDWFLPRDSDEFLFRQNFRQFFPSHGAKTAVYVGKVDY-FAEQKNLHALYDKMRW--DSTIQES--------------SVVSWYDHFITHLKN--------------------DP--VKKTYLTNENIVSNE---------TFFYDNLR-QFLDGDGLAYKSSFDYNNNTMEIKGTR----FLMSHKNIMETKKQ-IEAMDNIRQKATSVYFQSSKTTFSKTAFVFGDEYIRWQTNRIVGEELFRNLILAGVCVFLVTLFLI-ANLWTCLMVLMCVGFSLTNICGYMYYWDLSIDMIISTILVISLGFAVDYSGHIGHAFMAARKGTRNDRALTAISEIGPAVLNG-GISTFLAFCLLAGSKSYAFQTF-FKVFFLVVSIGLFHGLVFLPVLLSIIGPRAYLETESPTPEK 2893
K + WEKEF ++ P + ++ S +D + YA++ Y++ LG + KV L GI++V + A ++G+ + G+ + V ++PFL+L +GVD++F+++Q + ++Q E++ +++ R + ++ ++SF++ AF +GA +V+PA+ +F ++AG+ + + ++ T FV+ L +D KRQE NR D CC R ED + S + +LL + IV+ + + F + + ++D D +P DS + ++ Q+ H +V + + + K + + M DS +Q+ + SW D + +K DP V+ LT E + F DN + G AY S+ N + GTR + M++ +++T I+A+ R A++V + F + Y+ ++ + ++ NL ++ +FLVT+ L+ LW+ +++ + L N+ G M+ W +S++ + LV+S G +V++ HI AF + KG+R +RA A++ +G +V +G ++ F +LA +KS FQ F F+++ +V +G HGL+FLPVLLS IGP T E+
Sbjct: 576 KLQRAQAWEKEFINFVKNYKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQ----RDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDGTSVQASESCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYL--HAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRVDNITDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAV----NILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSVNKAKSCATEER 1266 The following BLAST results are available for this feature:
BLAST of TCONS_00006805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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