TCONS_00006805-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00006805-protein
Unique Name	TCONS_00006805-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	926

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00006805-protein ID=TCONS_00006805-protein|Name=TCONS_00006805-protein|organism=Clytia hemisphaerica|type=polypeptide|length=926bp
MDKKTEAEENGTQEKENTEEKSNFIVRCTNFVNTALETGFSRFGLLVGTH
PGKTIAVTLIFALLCLSGLVRFEQESRGEKLWVEQSSQYVTDQNWVRDHF
PTRIRYIQILLKGSDVLTPNGLKQMLNVDKMVQGMFANDSNSALHWKNRR
FDTPTQSLIELWPGLDAAAVDSMTKDDILRIVNEDPLISPIRNRNISIDS
YLSGISRNSTRHIVQASVARMTYFQKFDVVLDKSTGMWKDEYGTQWEKEF
AVVIRQTSFPGYEVFYSTLESFVKAGLDAIGNDYGLLFSGYALIITYVAF
QLGKFSRLKHKVWLAAVGIIMVGLAFAVAMGLCAGAGVIYGPVHSILPFL
MLGIGVDDLFVIIQTWDNVCMEPTKIQESVPEKISRTMKHAGVAITVTSF
TDICAFLIGATTVLPALRSFCIYAGVGILMLYIYAATFFVAFLTIDAKRQ
EMNRDACCCYRLPEDWQPMACSNKRFLNDVLKRFGKILLTIPGKVIVVLL
TGTLFGFGLYGILQLDQNFDPDWFLPRDSDEFLFRQNFRQFFPSHGAKTA
VYVGKVDYFAEQKNLHALYDKMRWDSTIQESSVVSWYDHFITHLKNDPVK
KTYLTNENIVSNETFFYDNLRQFLDGDGLAYKSSFDYNNNTMEIKGTRFL
MSHKNIMETKKQIEAMDNIRQKATSVYFQSSKTTFSKTAFVFGDEYIRWQ
TNRIVGEELFRNLILAGVCVFLVTLFLIANLWTCLMVLMCVGFSLTNICG
YMYYWDLSIDMIISTILVISLGFAVDYSGHIGHAFMAARKGTRNDRALTA
ISEIGPAVLNGGISTFLAFCLLAGSKSYAFQTFFKVFFLVVSIGLFHGLV
FLPVLLSIIGPRAYLETESPTPEKANEEECSNSSTSSTTEGDSTPKKNKV
HVEYKSCSEGKEDGNIGIENLNYVTS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003805	XLOC_003805	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00006805	TCONS_00006805	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003392	Ptc/Disp
IPR000731	SSD

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..21
None	No IPR available	GENE3D	1.20.1640.10		coord: 632..863 e-value: 2.4E-36 score: 124.5
None	No IPR available	GENE3D	1.20.1640.10		coord: 237..457 e-value: 9.4E-33 score: 112.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 867..900
None	No IPR available	SUPERFAMILY	82866	Multidrug efflux transporter AcrB transmembrane domain	coord: 245..445
None	No IPR available	SUPERFAMILY	82866	Multidrug efflux transporter AcrB transmembrane domain	coord: 664..860
IPR003392	Protein patched/dispatched	PFAM	PF02460	Patched	coord: 116..859 e-value: 1.6E-96 score: 324.2
IPR000731	Sterol-sensing domain	PROSITE	PS50156	SSD	coord: 283..445 score: 36.961

Blast

[Close]

BLAST of TCONS_00006805-protein vs. Swiss-Prot (Human)
Match: NPC1 (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 3.249e-51
Identity = 167/702 (23.79%), Postives = 320/702 (45.58%), Query Frame = 0

Query:  239 KDEYGTQWEKEFAVVIRQTSFPGYEVFYSTLESFVKAGLDAIGNDYGLLFSGYALIITYVAFQLGKFSRLKH-----KVWLAAVGIIMVGLAFAVAMGLCAGAGV-IYGPVHSILPFLMLGIGVDDLFVIIQTWDNVCMEPTKIQ-ESVPEKISRTMKHAGVAITVTSFTDICAFLIGATTVLPALRSFCIYAGVGILMLYIYAATFFVAFLTIDAKRQEMNR-DACCCYRLPEDWQPMACSNKRFLNDVLKRFGKILLTIPGKVIVVLLTGTLFGFGLYGILQLDQNFDPDWFLPRDSDEFLFRQNFRQFFPSHGAKTAVYVGKVDY-FAEQKNLHALYDKMRW--DSTIQES--------------SVVSWYDHFITHLK-----------NDPVKKTYLTNENIVSNETFFYDNLRQFLDGDGLAYKSSFDYNN-----------------NTMEIKGTR----FLMSHKNIMETKKQ-IEAMDNIRQKATSVYFQSSKTTFSKTAFVFGDEYIRWQTNRIVGEELFRNLILAGVCVFLVTLFLI-ANLWTCLMVLMCVGFSLTNICGYMYYWDLSIDMIISTILVISLGFAVDYSGHIGHAFMAARKGTRNDRALTAISEIGPAVLNG-GISTFLAFCLLAGSKSYAFQTF-FKVFFLVVSIGLFHGLVFLPVLLSIIGPRAYLETESPTPEKANEEE 879
            K +    WEKEF   ++    P   + ++   S          +D   +   YA++  Y++  LG     +      KV L   GI++V  + A ++G+ +  G+ +   V  ++PFL+L +GVD++F+++Q +        ++Q E++ +++ R +     ++ ++SF++  AF +GA +V+PA+ +F ++AG+ + + ++   T FV+ L +D KRQE NR D  CC R  ED   +  S           +  +LL    + IV+ +   +  F +  + ++D   D    +P DS    + ++  Q+   H      +V +  + +   K  + +   M    DS +Q+               +  SW D +   +K            D      + +   V       +  ++   GD + +   F  +N                 N +   GTR    + M++  +++T    I+A+   R  A++V         +   F +   Y+ ++    + ++   NL ++   +FLVT+ L+   LW+ +++   +   L N+ G M+ W +S++ +    LV+S G +V++  HI  AF  + KG+R +RA  A++ +G +V +G  ++ F    +LA +KS  FQ F F+++  +V +G  HGL+FLPVLLS IGP         T E+    E
Sbjct:  576 KLQRAQAWEKEFINFVKNYKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQ----RDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDGTSVQASESCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYL--HAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRVDNITDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSVNKAKSCATEERYKGTE 1271

The following BLAST results are available for this feature:

BLAST of TCONS_00006805-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00006805-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NPC1	3.249e-51	23.79	Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE...	[more]

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TCONS_00006805-protein (polypeptide) - C. hemisphaerica