TCONS_00026228 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026228
Unique NameTCONS_00026228
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026228 ID=TCONS_00026228|Name=TCONS_00026228|organism=Clytia hemisphaerica|type=transcript|length=1749bp
GATCCACCAGTTCTAGAAAAGGTTGCATCAGATGGTCTATGTGATATTCG
AAAGCAAGATTGTCTAAGGGCCCGTGTTATTGGCCGGAATTATGTGGAGT
CTGATAAACTGGCGTGTagaacaaagaaattgaaaGTTGAATCAAACTTA
TTGATAAAGGAAAGCACCACATCAAGTTTTGTAACTTCGAGAAGTGATAT
GTTAACCTTCCGAGATTTATCCTGTGAAATTCCTGGACAACATCTACCTT
TGGTTGACCTTGATTTTTCTTCGACACAGTCGGGAAGACCAGTTGGTGGT
GTTTCAATTCAATTATCAAATGATGGTGAAACTTTCTCAAATGAGAGTTC
AAATTATATAGCGTACGATTCAAAATGTGTTGAATGCAACAGTTCTACTG
ATTGTCGTTGGAAGgTCGATTCATGCAGAGTAAATAATTATTGCCTTGCT
GTTGATGAGCCTCATTTTATGGATTGGTGTCAGATTTGCCGTGGAAACAA
TACTTTCAATGAAAGAACTGATAATTCAGCTCCTGTTTTCCGACCGACAC
TTACACAAAGAGCATTCCCTGGTCAAACTCTTCGTTTCACAGTTCCTGTA
ACAGATCCTGaacaaaaaagattgaaattcaACCTCGTTGGAACGACTCC
TGATAATATGGAAATATCGTCCGCTGGTGTTATAACGTGGACAGCCGCAA
GGGAAAACAAAACCTATAATGTCAGAATCAGAGCAACCGACATTTGTGGA
AATTTTTCAGAGGCTACATATATGTTTGAGTCAGTTTCCTGTCCATGCGA
AAGACTAAATGGTGCTAAATGTGGAGCTTACCCAAATGTTACTTGCCAAT
GTCCAAAAGGATGCATTGGAGAAAACTGCACACAAGATATCCAAGGCGAA
AAGTGTATCATCGAGGgtcaaaaagaaacaaaagagcAGAAAAAATCCTA
TTTCAATCTCGAGTGCCAATCAAACGGACTGAAAGCAGCATTTAACTTGA
GTCATTTGGAACGACATGGATTACCATACATTGTCAGATTTAAAGGCGAA
GATCATGATTGCCAGCCATTGAATGGAACATATGGGAACCTTTATGGTGA
TGACAAACTCTGGATTGCAGCCAATTATTCAGATTGTGGGATCAAGGCTT
ATGAAGAAGGAGGCAAGATTGCATTTGAACAGACTATTGTGGTAGAGTAC
GGTACTAAGATGGATTCTTCATTGATACAAAGGCAATTCGTTGATACCTA
TAATGCAACATGTTTAATTGAACGAAACATCACAAGGCAATTTAATATAA
GTGTGACGAAAAGAAAGGCGATTAACTCAGAGGAAGGTCAGAgacatttc
attttttcatagaTAAACAGAAGAGAATGGAAGAGAAGTGAACCCTCTGA
GTCATCCGGAATGGGTTCTATTTTTGTATAGATACCTACTCTAAGATAGG
GAAATTACCACGCTTACCAGATACTGCTAACCCTACGCTCACGACACAAC
AGAGTTATTGGTGTATAGACGACAATACTCGAATTACACGGGAGTAGTTC
GTAATACATCTTCGCAGATGTTGAACCTATGAGTATCGTCAACACACCAC
ATGCAATGCTTAGCACACTCCCCATACTCTTTTATCAGAGTGATGTTAGC
CAGTTCCCCTCACAAGGCATAAGTCGACCCGGGCGAAGATACATTCACGA
TGCCAAATGAATCATAGCACCGAGTGAGAATCAAACCCTGACCTCCCAG
Run BLAST on NCBI

transcript from alignment at sc0000565:88477..93157+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026228 ID=TCONS_00026228|Name=TCONS_00026228|organism=Clytia hemisphaerica|type=transcript|length=4681bp|location=Sequence derived from alignment at sc0000565:88477..93157+ (Clytia hemisphaerica)
GATCCACCAGTTCTAGAAAAGGTTGCATCAGATGGTCTATGTGATATTCG
AAAGCAAGATTGTCTAAGGGCCCGTGTTATTGGCCGGAATTATGTGGAGT
CTGATAAACTGGCGTGTagaacaaagaaattgaaagtaagtcatttttta
tcgaataataTCCAACTGCCAATTATGTAGCCTGTTTCACTCctactacc
ctgagtatcagaggttaagttttcaaagaatatattaacctctgaagacc
aataatagaaatattatcgcgcatgtgtcaatctaatcactgcagaaaga
atcaaagatgaagagcaaatgttaccatattaatgtctagcagactgtat
cagtatgcagtttactatttacaaattccccAGAAGCCTCCGAGTATAAT
TAacatgagtttctttcaaaagcaaaaatcttttacatgatccccaaata
tataacagtaattactaaactattaattatggaaatgtcactttaattga
atcgaaataatagacagactttatgttatgattttctatcactgactctt
tttaaaaagtactggtgatattttttagttgtgttttcaacgacgggaat
aataatatcaactttgaacttcatccaagatcttggatggttgtcatggt
tacttttgcctgtcttgattgcgcgctgaatagaatctctattggtcggc
acaggtcaatatatgatattgacctgtgcttttcacggtacacTTCTACT
GTTaccaattttacttttttgagaaatctttCCTTGGATCGATCTGAATT
CTGAGTCTCGCTAAAACCAATTTTCTAACAATCTCGTATCTCTAGAGCAG
cttgcaccactttttgattttactgatagaCATGATACACATGATACCTT
TTGTGAGCAACATCAGAATCATAAAAGTACGAACCAAGGGAATGGATTCG
AGTTTGACTTTCTTGAAAACGCGCAACTGatctgcttgaaaacgaaaaat
aCCATTGCATTGTGAGGTGAACCTTCTTATGAACAGAACAGGCCCTATCT
TAGGGGGTTACTCAGTGGCAGTaacaatttgttttgataagcAGAAAAAA
AGTGGAAAGAAGAACGGATGAACGGAGAGTTGCTTTCCAAAGACCCTTTA
GCGCTAGCGCTTGGCCATACTCGAACAAACCGGGAAGGACAGTGTATCCT
AACAGTCAAAACAGTTTGCATATAGTATGGCTTCTCCAAAGACgcaacaa
aaattttgaaaataattcagaCTTGAAATGTTTCCTAACCGTAACTAACC
CGTAACTCTTTTCGTACGAGGAAGATTTTGGTACCGGCGTTGCTTTGATA
TTCGTCTGGAGGTCATAAATATTATAACTCTATTTATTCACTAAATGAAA
TTCTTATTCGTCTGTTTTATAGGTTGAATCAAACTTATTGATAAAGGAAA
GCACCACATCAAGTTTTGTAACTTCGAGAAGTGATATGTTAACCTTCCGA
GATTTATCCTGTGAAATTCCTGGACAACATCTACCTTTGGTTGACCTTGA
TTTTTCTTCGACACAGTCGGGAAGACCAGTTGGTGGTGTTTCAATTCAAT
TATCAAATGATGGTGAAACTTTCTCAAATGAGAGTTCAAATTATATAGCG
TACGATTCAAAATGTGTTGAATGCAACAGTTCTACTGATTGTCGTTGGAA
GGTTAGAATTATTTCTTTGCaaaacccctgtctcacagcccctgtggaac
tttttccaaaattaggGATATAAATTTCCATCGAAATCCaaatctggaaa
aaaaattctataattttaagctttaaagaatcCAGTTGGGATGGGCttaa
agtgcaattttttacattggattTCGAATTGGTATTGGTATTGGTATATT
GGTAATTTCGGCCAAATTTTCCAAGAGAGTCTGTAGAGGGTGTTTAACAA
ATGTACAACAGCTTAAACAAGACTTGGTTTGTAGTTCAAGGAAAAAAGTC
ATACGCTTTTTTGTAAATTGTAACCCATCGAAAACCCATTATCGGTCTAA
TGGAGCTTTTAATTTGTCACACTGATTTTGATCTGGTCACTAAGACATAG
GGGCACAGTGTACATTCTATTCAcaatttctattgtttcaggTCGATTCA
TGCAGAGTAAATAATTATTGCCTTGCTGTTGATGAGCCTCATTTTATGGA
TTGGTGTCAGATTTGCCGTGGAAACAATACTTTCAATGAAAGAACTGGTC
AGTATATATGTCTAAGACGTATGGaacttttttaatgttttgaagTATAT
GGAAAACTATTTTGTAACGGTAGTTTTTACTGACGGAATATGAAAATTCG
ATCGGCAAAATTTTCACCAAGTTTGTACAAAACCTGAATGATGTCTATTC
TACgtagatattttatcaacaacCTTTCTTCTAATTTTAGATAATTCAGC
TCCTGTTTTCCGACCGACACTTACACAAAGAGCATTCCCTGGTCAAACTC
TTCGTTTCACAGTTCCTGTAACAGATCCTGaacaaaaaagattgaaattc
aACCTCGTTGGAACGACTCCTGATAATATGGAAATATCGTCCGCTGGTGT
TATAACGTGGACAGCCGCAAGGGAAAACAAAACCTATAATGTCAGAATCA
GAGCAACCGACATTTGTGGAAATTTTTCAGAGGCTACATATATGTTTGAG
TCAGTTTCCTGTCCATGCGAAAGACTAAATGGTGCTAAATGTGGAGCTTA
CCCAAATGTTACTTGCCAATGTCCAAAAGGATGCATTGGAGAAAAGTAAG
TAAATTTACACTGCATATCACACCTATGTCTCACAGCctcggtgaaactt
tttcctacagCGTGGATAAAGTTTTCTATCGAAGTCCAAATGGGGATAAA
AGTTACATTGCACCTAAATctaaaaattccagtgggatGCTTTTAGAGTG
CAATTTAACTTTCGATGCGGATGAAATCaagaaagtcaatttctcagtgg
ctttgaaattgtagggtatttttccaagTGGGCTAGGTTTCCAGCGGGTC
TGACCAGGATTGTAGCAAATCTTGTTTTtcaataactccagtttggctaa
tggtagagAAACCAAACCTTAACAGGAGTAAAATTCACAAGCTAAAAAGC
ATATCCACAAAACCAAAGGGGATTCCAAATGTAGCAATTTAAACTTCTTA
TAAAGACCTTGACCAGATCGAAAAACGAGCAACTAACTAGCTAACAATCT
CGAGCCCCGAATAAAATCAAACGGGATTCACGTAAAAAATATGCTTTTGA
CGTACTCTTGCATTTCTACCCTTGACATTCATATTTTCGTGATTACTATT
CCATAGCTGCACACAAGATATCCAAGGCGAAAAGTGTATCATCGAGGgtc
aaaaagaaacaaaagagcAGAAAAGTAAGTTTAATAGCCTCCAAAATTCA
AACTGATCATTTGTTTAACAAAGAAAAGTAGAGCTTACGGCCGTAACGTT
CGCATCTCAGAATAATGAACCTTTTTCCAAGTCATTGGTATTTTGCCCGG
GGGGGATACGAGGGCAAAATGGGCTAcggggatgcgccgctggtcagggt
accttttttaacctccacgagtcccaggtagggtcgtaaaaacaccaaaa
tagaaaaaccaGTCCCTCGTaaggtgccttttttggaaaatttgagaaaa
atttgaaatttcagtcTTATCCAGGGtcttattttttgcaaatttcagaa
agatttttgaaaaaacgagtcccacgtagggtccatttttcagaCCTCAC
CGGAGCaccccccgtcggtcggcaagggtaatACCCCCGGGGTATTTTGA
TCTCAACGTTCTTTTTTAATCCTAGAATCCTATTTCAATCTCGAGTGCCA
ATCAAACGGACTGAAAGCAGCATTTAACTTGAGTCATTTGGAACGACATG
GATTACCATACATTGTCAGATTTAAAGGCGAAGATCATGATTGCCAGCCA
TTGAATGGAACATATGGGAACCTTTATGGTGATGACAAACTCTGGATTGC
AGCCAATTATTCAGATTGTGGGATCAAGGCTTATGAAGAAGGAGGCAAGA
TTGCATTTGAACAGACTATTGTGGTAGAGTACGGTACTAAGATGGATTCT
TCATTGATACAAAGGCAATTCGTTGATACCTATAATGCAACATGTTTAAT
TGAACGAAACATCACAAGGCAATTTAATATAAGTGTGACGAAAAGAAAGG
CGATTAACTCAGAGGAAGGTCAGAgacatttcattttttcatagaTAAAC
AGAAGAGAATGGAAGAGAAGTGAACCCTCTGAGTCATCCGGAATGGGTTC
TATTTTTGTATAGATACCTACTCTAAGATAGGGAAATTACCACGCTTACC
AGATACTGCTAACCCTACGCTCACGACACAACAGAGTTATTGGTGTATAG
ACGACAATACTCGAATTACACGGGAGTAGTTCGTAATACATCTTCGCAGA
TGTTGAACCTATGAGTATCGTCAACACACCACATGCAATGCTTAGCACAC
TCCCCATACTCTTTTATCAGAGTGATGTTAGCCAGTTCCCCTCACAAGGC
ATAAGTCGACCCGGGCGAAGATACATTCACGATGCCAAATGAATCATAGC
ACCGAGTGAGAATCAAACCCTGACCTCCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014751XLOC_014751Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026228-exon-sc0000565-1491911889:88477..88611TCONS_00026228-exon-sc0000565-1491911889:88477..88611Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1510915933:88477..88611TCONS_00026228-exon-sc0000565-1510915933:88477..88611Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1575043694:88477..88611TCONS_00026228-exon-sc0000565-1575043694:88477..88611Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1491911889:89899..90177TCONS_00026228-exon-sc0000565-1491911889:89899..90177Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1510915933:89899..90177TCONS_00026228-exon-sc0000565-1510915933:89899..90177Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1575043694:89899..90177TCONS_00026228-exon-sc0000565-1575043694:89899..90177Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1491911889:90618..90723TCONS_00026228-exon-sc0000565-1491911889:90618..90723Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1510915933:90618..90723TCONS_00026228-exon-sc0000565-1510915933:90618..90723Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1575043694:90618..90723TCONS_00026228-exon-sc0000565-1575043694:90618..90723Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1491911889:90917..91271TCONS_00026228-exon-sc0000565-1491911889:90917..91271Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1510915933:90917..91271TCONS_00026228-exon-sc0000565-1510915933:90917..91271Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1575043694:90917..91271TCONS_00026228-exon-sc0000565-1575043694:90917..91271Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1491911889:91833..91900TCONS_00026228-exon-sc0000565-1491911889:91833..91900Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1510915933:91833..91900TCONS_00026228-exon-sc0000565-1510915933:91833..91900Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1575043694:91833..91900TCONS_00026228-exon-sc0000565-1575043694:91833..91900Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1491911889:92352..93157TCONS_00026228-exon-sc0000565-1491911889:92352..93157Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1510915933:92352..93157TCONS_00026228-exon-sc0000565-1510915933:92352..93157Clytia hemisphaericaexon
TCONS_00026228-exon-sc0000565-1575043694:92352..93157TCONS_00026228-exon-sc0000565-1575043694:92352..93157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000565supercontigsc0000565:88477..93157 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	4.83224e-05	0	0.0595511	0	0	0.184856	0.213166	0.178609	0.421141	0	0	0.0903197	0	0.277526	0.170793	0	0	0	5.31325e-06	0	0.25705	0	0	0.186945	0.133669	0	0	0	0.010078
Blast
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BLAST of TCONS_00026228 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 2.027e-20
Identity = 80/310 (25.81%), Postives = 129/310 (41.61%), Query Frame = 1 
Query:    7 PVLEKVASDGLCDIRKQDCLRARVIGRNYVESDKLACRTKKLKVESNLLIKESTTSSFVTSRSDMLTFRDLSCEIPGQHLPLVDLDFSSTQSGRPVGGVSIQLSNDGETFSNESSNYIAYDSKCVECN--SSTDCRWKVDSCRVNNYCLAVDEPHFMDWCQICR---GNNTFNERTDNSAPVFRPTLTQ-RAFPGQTLRFTVPVTDPEQKRLKFNLVGTTPDNMEISSAGVITWTAARENKTYNVRIRATDICGNFSEATYMFESVSCPCERLNGAKCGAYPNVT-------CQCPKGCIGENCTQDIQG 897
            P + ++ + G CD++K +C+  RV G+ + E   + C   KL+  S+    E      + +++     R + C++P     +   D      G+P G   +++SNDG  FSN     I YD  C  C    +  C  K + C ++  C    + +    C ICR      T++   +N  PV +    + + F G+   +     DPE   + F L  + P+   +SSAG+  W       T  + +R  D C   +  T      SC C  LNG  C +  N +       C C  G  G  C  DI G
Sbjct:  924 PEITELGNAGFCDVQKYNCMMVRVFGKGFKELPSIKCEVTKLQYNSS----EWMPGEPIYTQTVFHNSRAVDCQLPTD---VQQFDTMDLVGGKPTGKWQLKVSNDGYKFSNPKITVI-YDGACQVCGLYKNDSCTIKENVCIIDGLCYVEGDKNPTSPCLICRPKISRFTWSFLENNQPPVIQALQDKLQTFYGENFEYQFVAFDPEGSDIHFTL-DSGPEGASVSSAGLFMWKTDLLT-TQQITVRLNDDCDAETRVTIEVTVKSCDC--LNGGSCVSDRNFSPGSGVYLCVCLPGFHGSLCEVDISG 1221
The following BLAST results are available for this feature:
BLAST of TCONS_00026228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VWDE2.027e-2025.81von Willebrand factor D and EGF domain-containing ... [more]
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