|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026225 ID=TCONS_00026225|Name=TCONS_00026225|organism=Clytia hemisphaerica|type=transcript|length=4153bpRun BLAST on NCBI transcript from alignment at sc0000565:55389..96915+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026225 ID=TCONS_00026225|Name=TCONS_00026225|organism=Clytia hemisphaerica|type=transcript|length=41527bp|location=Sequence derived from alignment at sc0000565:55389..96915+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026225 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4) HSP 1 Score: 139.043 bits (349), Expect = 8.513e-33 Identity = 120/445 (26.97%), Postives = 193/445 (43.37%), Query Frame = 2
Query: 1463 SGITQQQAEQSCERALRDSTSGRACLRILPTLDITPFMQQCIEDTKVLDDSRTSIISAVAAMMXXXXXXTLRNVALWTADDDGNLQPPQAVGDAL----CPSDCSGNGRCVNSTCVCDAGFLSVDCSINEGDPPVLEKVASDGLCDIRKQDCLRARVIGRNYVESDKLACRTKKLKVESNLLIKESTTSSFVTSRSDMLTFRDLSCEIPG--QHLPLVDLDFSSTQSGRPVGGVSIQLSNDGETFSNESSNYIAYDSKCVECN--SSTDCRWKVDSCRVNNYCLAVDEPHFMDWCQICR---GNNTFNERTDNSAPVFRPTLTQ-RAFPGQTLRFTVPVTDPEQKRLKFNLVGTTPDNMEISSAGVITWTAARENKTYNVRIRATDICGNFSEATYMFESVSCPCERLNGAKCGAYPNVT-------CQCPKGCIGENCTQDIQG 2740
SG+T+ C+ L +S+ GR CL L + ++ C++D + DD S A A++E E+ + + ++ G ++ D L CP+ CSGNG+C+ C C F S DCS + P + ++ + G CD++K +C+ RV G+ + E + C KL+ S+ E + +++ R + C++P Q +DL G+P G +++SNDG FSN I YD C C + C K + C ++ C + + C ICR T++ +N PV + + + F G+ + DPE + F L + P+ +SSAG+ W T + +R D C + T SC C LNG C + N + C C G G C DI G
Sbjct: 799 SGLTEYSTLTLCQETLANSSIGRLCLAFLGK-RLDSVIEMCVKDVLLKDD--LSWAEAGVALLENECEKRIVEEGKYNTEEYGT-----SIEDILSVLKCPNLCSGNGQCMEWGCACSPSFSSYDCSDSYDKAPEITELGNAGFCDVQKYNCMMVRVFGKGFKELPSIKCEVTKLQYNSS----EWMPGEPIYTQTVFHNSRAVDCQLPTDVQQFDTMDL-----VGGKPTGKWQLKVSNDGYKFSNPKITVI-YDGACQVCGLYKNDSCTIKENVCIIDGLCYVEGDKNPTSPCLICRPKISRFTWSFLENNQPPVIQALQDKLQTFYGENFEYQFVAFDPEGSDIHFTL-DSGPEGASVSSAGLFMWKTDLLT-TQQITVRLNDDCDAETRVTIEVTVKSCDC--LNGGSCVSDRNFSPGSGVYLCVCLPGFHGSLCEVDISG 1221 HSP 2 Score: 125.561 bits (314), Expect = 9.862e-29 Identity = 113/391 (28.90%), Postives = 164/391 (41.94%), Query Frame = 2
Query: 131 SAKFVLSLLEVRTNQIKRSNVFYAGIKVSPTNIIISEKGPTQNVTLTSTVPIVCN-------------------HGSTTCGVNIRIEKNETQAMTT------LCSLRFKPGDKTKTMNVAATKDFIDDNDRSLKIKFNIPRHANPL---DWFCTSPIPE-ITVTAKDAPTRQCRSTGDPYINTFDGTWFPHYKVGDYVLVTSKARLFEVHARAFECQR---SVSCNCGVAAREGDDVMVVDMCQNT---KPPIVKFASTVLPQEGSIIERGPDGKTFILNFPSGARVTFVYRNPSSDIIVSLPPDDYQNTRGLCGTWNGNTNDDFTSASGHVVDLQGSSVWLSRNRERMDNFTESYRFKDFSRESLFYYQGAKVKSCTATRIPSYCSCKGD 1198
++ F L V++ I+ S F+AG K+ P ISE G + + STVPI+C+ G G+N+ + + T CS F + A DF D DR I P+ D+ + IP+ I + KD PT C + DP+I TFDG + ++K G +VL S +R FEVH R ++C+ VSCNCG A+EG D++ DMC P + S + + I E G+ + F SGA + + + P DY+NT GLCGT++ N +DF +G +D +N F +R S S T+ PSYCSC D
Sbjct: 268 ASVFFLENPHVQSVAIE-SQEFFAGFKLQPELSTISEDGKEYYLRIESTVPIICSEFSELDQECKISLKLKTIGQGREHLGLNLALSSCHVDLLQTSSCANGTCSHTF--------VYYTAVTDFSRDGDRVSNIV------VQPIVNEDFLWNNYIPDSIQIKVKDVPTAYCYTFTDPHIITFDGRVYDNFKTGTFVLYKSMSRDFEVHVRQWDCRSLHYPVSCNCGFVAQEGGDIVTFDMCNGQLRESQPYLFIKSQDVTRNIKISESYL-GRKVTIWFSSGAFIRADLGEWGMSLTIRAPSVDYRNTLGLCGTFDENPENDFHDKNGMQID---------QNFNNYVAFINEWRILPGKSMS-----DTLPVSMTSPGKPSYCSCSLD 628 The following BLAST results are available for this feature:
BLAST of TCONS_00026225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.