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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026252 ID=TCONS_00026252|Name=TCONS_00026252|organism=Clytia hemisphaerica|type=transcript|length=2051bpRun BLAST on NCBI protein sequence of TCONS_00026252-protein >TCONS_00026252-protein ID=TCONS_00026252-protein|Name=TCONS_00026252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=656bp DQTSETGFTPCTAKFPKLKSDPFVTVDVHDSRMRFVCSFEPEVIKNNNQYRun BLAST on NCBI transcript from alignment at sc0000565:30491..37292- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026252 ID=TCONS_00026252|Name=TCONS_00026252|organism=Clytia hemisphaerica|type=transcript|length=6802bp|location=Sequence derived from alignment at sc0000565:30491..37292- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000565:30491..37292- >TCONS_00026252 ID=TCONS_00026252|Name=TCONS_00026252|organism=Clytia hemisphaerica|type=CDS|length=21681bp|location=Sequence derived from alignment at sc0000565:30491..37292- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00026252 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4) HSP 1 Score: 166.007 bits (419), Expect = 1.937e-42 Identity = 128/425 (30.12%), Postives = 199/425 (46.82%), Query Frame = 1
Query: 46 PKLKSDPFVTVDVHDSRMRFVCSFEPEVIKNNNQYNVTWYGVTSDGQPQVLFEEMLQSAETKSYLQNTNSKRRQQTFCLNQDIFCEVRSYFVGN-EKDGVVKRSNNFYAGIKVSPTSLKLSESDPPTELTFTSTVPIVCNKDTE---NCGVTLRIA------QKENLDGALEFCSLSFEPGEAGQTKT-----MKVAALRDFRNDGDKALKIKFKIPITPNPLDWDCHPNIPD-VTVLTKDVTTAQCQSTGDPHIRTFDGRYFDHYKVGDYVLVKSEARLFEVHVRTFQC----WSVSCNCAVAAREGXXXXXXXXXXXXXPRAR---FASTVEPQPGSIMEMSPNGKTFVFNFPSGASVKFQANSWGANVYVQLPPDDYGKTKGLCGIWNGDRSDDLTSKDGREFQGRGIANVGFTESWRFQTG 1251
P P V V++ +SR+ CSF+ KN+ +++ W ++S + L +E A + L N + L IFC +F+ N V S F+AG K+ P +SE L STVPI+C++ +E C ++L++ + L+ AL C + + T + A+ DF DGD+ I + PI W+ + IPD + + KDV TA C + DPHI TFDGR +D++K G +VL KS +R FEVHVR + C + VSCNC A+EG D++ DMC ++ ++ F + + + S G+ F SGA ++ WG ++ ++ P DY T GLCG ++ + +D K+G + V F WR G
Sbjct: 189 PPPAGRPEVLVELIESRLFCRCSFDVPATKNSVGFHIAWSRLSSQEVKEELTQETTVQAFSLLELDGINLR-------LGDRIFCSASVFFLENPHVQSVAIESQEFFAGFKLQPELSTISEDGKEYYLRIESTVPIICSEFSELDQECKISLKLKTIGQGREHLGLNLALSSCHVDLLQTSSCANGTCSHTFVYYTAVTDFSRDGDRVSNIVVQ-PIVNEDFLWNNY--IPDSIQIKVKDVPTAYCYTFTDPHIITFDGRVYDNFKTGTFVLYKSMSRDFEVHVRQWDCRSLHYPVSCNCGFVAQEGGDIVTFDMCNGQLRESQPYLFIKSQDVTRNIKISESYLGRKVTIWFSSGAFIRADLGEWGMSLTIRAPSVDYRNTLGLCGTFDENPENDFHDKNGMQIDQNFNNYVAFINEWRILPG 603 The following BLAST results are available for this feature:
BLAST of TCONS_00026252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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