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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025993 ID=TCONS_00025993|Name=TCONS_00025993|organism=Clytia hemisphaerica|type=transcript|length=1002bp
gaccctacctaactgttagttaatcaattccaaacaacaaaacccccgga
aaatttaaaatgtcggaatgagcagtagacaaccttcttttgagaccttg
taattatccttttccGTTTTAAACAGAGCAAACTGCACACGTGTGGTGTG
GTGTGCCATTTTATTCTAAGAGTTTTAAAATGACTGAAAAACTGAATGAT
GAAATACTTTCTTATGCTGTGAGTTCCATTTTAAACAGAGACACCAAGCA
GTACggcaaaaaatttctttttgatggCGAAGATGACACTTGCTGGAATT
CTGATCAGGGTGACAGCCAGCATATCAGTTTGAAATTCAATTCCAAAATT
ACGATTTCAAGGATAGAAGTTCAATTTCAAGGAGGATTCTCAAGCAAACA
GATTGATTTATTGGACTTGGCAAATGACCAAAACATACTCACTTCATTGT
ACCCTGAAGATGTCAATAACAATCAGATATTTGAGCTCGAAAAACCTGTT
TCGGTGACAATGTTGAAATTGAATCTATTGAAGCCGACAGATATGTTTGG
GAGGATGATTGTTTATAACCTAAACATATATGGTCTCAAATAAAGTTATC
CAAAATGCATTTTATTAAATGACATTGGATTCAAAGGATTGATCGGTGGA
ATAATAAgtaaaatcagcaaaaaagtAAGGCAAAAAGTGAAACTTAGTAA
AAGGTACTGGTCTCGATTGTGCTTATGTGAAGCAATATGTTTCATCAACA
TAACGTGCAAGCTCAAAATCCTTGCTTATGGAGAATAATGATGAATATTT
TGTATTTGCCATAGTATAGCATATCATCATCATATCTACATTATTTCAAT
GAATGAAAACAGTATCAAAGGATAGAATTTGTCACTTAAATCTGGTTGGT
TTGGTTGttttaaaaatggatttttatagtattttaaaatttcacttaTT
CTATTTAtgtatttattaaattttaaataatttcagATTGCTATGATTTA
GA Run BLAST on NCBI protein sequence of TCONS_00025993-protein >TCONS_00025993-protein ID=TCONS_00025993-protein|Name=TCONS_00025993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MTEKLNDEILSYAVSSILNRDTKQYGKKFLFDGEDDTCWNSDQGDSQHIS
LKFNSKITISRIEVQFQGGFSSKQIDLLDLANDQNILTSLYPEDVNNNQI
FELEKPVSVTMLKLNLLKPTDMFGRMIVYNLNIYGLK Run BLAST on NCBI transcript from alignment at sc0000559:168807..185728+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025993 ID=TCONS_00025993|Name=TCONS_00025993|organism=Clytia hemisphaerica|type=transcript|length=16922bp|location=Sequence derived from alignment at sc0000559:168807..185728+ (Clytia hemisphaerica)
gaccctacctaactgttagttaatcaattccaaacaacaaaacccccgga
aaatttaaaatgtcggaatgagcagtagacaaccttcttttgagaccttg
taattatccttttccGTTTTAAACAGAGCAAACTGCACACGTGTGGTGTG
GTGTGCCATTTTATTCTAAGAGgtatatttttatcttttattaaTTGAAC
ATGTTACTTACTTTCTTACTTACCCATAACagttcaaaagttttctcaac
AATCATCCATACCGTAtaaacttggtctaatgtccagacgatctcaaccg
aacggaatcgacgatcgaaccagtcgaaccaaatcgaacgcaatcgaccg
attgaaattcgattgtcgaacgcaatcgaatctcaatcgaatattaccgc
aattttcagattcgattgatattcgattgatgttcgattgcgttcgcttg
cgttcgatcgtcgattcattgacccccgggattgttcatcgcataattta
tacgggaaatcgaaagtaatttcattcggcttgtgatgtttgttgagagc
ttggatgttgggaagctgcaagactaaagccagacgatctcaatcgaacg
gaatcgacgatcgaaccagtcgaataacaatcgaaccaatcgaatattac
ccagcagaattttgacgttcgattgagattcgattgcgttcgacaatcga
atttcaatcggtcgattgcgttcaatttggttcaatcggttcgatcgtcg
attctgttCGATTCAGATTGTCTGgtaacgaccctcgacatggcccgaga
attcttgggcctcttcgggccatgttagggccaagagaccctatcaattc
ttttggcccgaacatgacccgagtcattcgggccgtgttcgggccatgtt
aaatgttaaattgattcagaatgtccagtcaaacaaaatattacaaaata
agatttgtctgttttgtttatatcgctcaaaaaaactttacgagcttccc
gtggacacgcttcattttaaaaccaggaccagtttactagcaaatatttc
caccctaagtatatatatttatatgttttcatacctaataagacatttaa
tatttatatgattTTACAACATTtatatatatttaatataattaagagaa
accaagtttttctcaaagataatgttaaaaaaattcagtcctgaaattac
acgcctgtttaaatcatgttttcaaaaattggcccgagtgtgacccgaac
acggcccgaaaattttcgggccagctcgggccatactcgggctttacaca
aattccaataaaagttttggcccgagaattctcgggccatgtcgagggtc
gtgtcTGGTattgtcgacatccctcctctaaattCGACGTACCCTCTACC
caaagctgaaaaattaaaaaaaggttgaaattattttatttgcttagtgg
taagagaggataaatcttttttcaatcaccaattctgactttcatattat
tcctatctctaaagaagggtgaaGGGTGTCGAAGGgataccgtgagattg
gttAACTTGGTGGCAACTTGCAATGACCCTGCCCTGGACACCGCTGTACA
TTGTACGGTGTTGTCCGGTGGGCGTTTTTAATGTACGGTGGGAAGAGAAC
CAGGTATGCAGCTGATTTTCCGTCTTCCCTTCATGCCTCTTTACTTCGTA
GGTCGGGGCGGGGACAAATCTTGAAAGAGGGTAGGCGGAAGCGGAAGTGT
TATAGTTCTATGGCATTATATATGAGTTAAAGATGGCTACATCGGACGAG
AACGATGGGAATAAATCTTTGAGGAATAGCTCCCACCATACATTGTACGG
TGTAGCCGCCGTACCTTGTAGTACGGTGGTCAAAATAAGGTTGACTTGTT
TCCACCGTACGCCCAACCGGACAACACCGTACAATATGTATGGCGGTGTG
GCAGTGTTCAGGGttgtaacttgcatcagtggaggctaacatgcatagcc
ctcaaatgaatgacctggctggtcattaaaatacaaagttaaatcaaaac
aaaaatggtagagcagagctgcgagcggagctgtgtagttcattagtttt
gaaattatgctgctttgattggtcagacATTTCATGGCCATGCAAGtctc
cctccactgatgcaagttacctgacttcacggtatGTTAGGTATGGTCAT
CCTGCAGCATGGCATTTCCAGAAATAAAATATGCCAACCTCCCTAGGGTT
GTGGGCTGTCAGGGATGCCGCCCGACTTTTGACCCTTGGACctttaccgg
gactaaaaaggagaaagcaAAGGAAAATGTTATGAAATTTACGACTCTTC
TATCTGGggataaaaagttgaaaatttcttatttcttatttcttatttcc
aacccttagtgggacggaaatttgattttctgatttttttaatagacatt
ttttttctccaatcgATCGCcaaggaaagaaaaatagtttccatcagcga
ttccgaccttcctataaTTCCTTTccctaaagaagggtgtcgaaattaga
agagggatgtcaacattagaccaacttacggtatagcAGTACTTTGGACA
TCCAAAGACACCTGGAAATCTTAATCCTGACCTGAGAAATTTCGGAAAAT
GCAGGATTTCCCTAATTATTTGGTCATATctgcatagctgtcaacttcgc
ctCACTAAAATGTGAGGAGAGCTCTAAGtcagaaaaatttttccaaatcg
gaaaatcgggaaattttccCACGAAATccgattttcttattttttagagA
ATTCGGGGAAATCGGGATATTATCCatcccaattttccaaaatcattcca
ttttttcaaaatcttaattttttttcaggacattgaaaatttttttggaa
atttgggAGATGCAGgagaaaatgctgaaaatgcGGGAGATTTCCGCGGG
AGAAAATGGGCCATTTCCAGAATTTGTCTATAACAGGGACGGAccacaca
ggatttccgagggcaaaagttttcacccaAATACAAAATTTCCAATACGA
GAGAAGAAagtgtatgaatttccaaggcaattgaatcaaaaacaacaaaa
agagaGGAATTTTCGACACATTTTGCGAAAGTatatacagcacctgaccc
cgagaatgtaggtgaaatttgaatcagacctgagagatgtagatttgcat
ttaaaaaaatattgaatagttTAAACGAAATTTTGANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAgagcttttgttattc
tgaaaattggatttttttgctttttaacccccagaatgtaggtgaaaaga
ttcggttgctgagagcgaaatttcagtattcatcggaaatttttgttctc
taagtgaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNgccaacattaatcatctctcaggtaatactttcatg
ttatgaaagtacaacaaaaaagttttatataatttgacagactttttatg
tcgggttatgaaggctccaaaattgtaggtcaactaaccccaaactAGAA
AGTGCGAAAGTGTTCGAAAAGGACACGCGAACACGCGTATGTTTGTATTG
AACACTTCAATGGCTGTTACAAACAGTTACAATCAAACACCAAAATGCTC
CAAACAAACATATTTCAATCGTTGCGATTAAAAAACAATCGCAACGATTA
AAGAATATTCGAGACTATGATTAAAATGCTCgaagcgattgaaaaatgtt
TGAGGCAATTACAAAATGTTTCATGCAACTAAAAGTTGTTCGAGGGGATT
AAAAAATGTTCGAGGCGATTAAAAATTGTTCGAGGCGATCAATAAATGTT
TAAGGCGATTAAAAAATGTTCGAGGCgatcaaaaaatgtttgaagcgATT
AAAAAATGTTCGAGGCGATTAAAAAATGTTCGAGGCGATTAAAAAATGTT
CGAGGCGATCGAAAATTGTTTgaagcgattgaaaaatgttccaggcgatt
aaaaaatgttcgaggtgatcaaaaattgtttgaagcgattgaaaaatgtt
ccaggcgattaaaaaatgttcgaggtgatcaaaaattgtttgaagcgTTT
AAACAATGTTCgaagcaaataaaaaatgttttgctactgattggtcaagc
gctgaaactGTATTatttaatgtcacgtgacctaaaTAGGATCTCCTAcc
aaccacggcacacttttcagtaaaagcacgacatctagccctttgggctt
tataaatctgtggctCAAATAGGAACAAAACTTGTAAACATCCCAATCTT
TCAGACAGGCTTTGATACAAAGTACTCAATTCCTTAACGGTTAAAATTTG
ACAAAGTTTTTGGCAAGTGACGATTTTTTTTATCGACGAATCTTTTTAGA
TCATCATTTCCCACTATACGCCCATTCACCTATCGTTATTATCTCCTTGA
TTAAATTATGTAGAAATTATACTCTTTTATATATTTCATTGGGGTTTCCG
CAGACCTCGGTTGAGGAGGACTTTTTTAGACCCACCCTTTTTAAATCAAG
TCATAGTGATTTGTTGAATACATTCCTGAGGGGTAAATCAGTGCAAAAAA
AGTACGAGATTTTGCGATTTTTGGGATTTTCCAAAACTTCTTTTCAACCT
TTGTTCATGTGTTGTTTAAAGTATCTGGAATTTCGGGCCGAAAAATCGTC
TCAACTGAGAAACGttcataaattttcatttgtcaaGGAGGAAAACATTT
AGTTCTCTTTCCAGACGCAAAGAACGAATTTCGAAAATCCTTACTTGGAT
ATCAAGCTATTAACAatagaatttgagttttttaagTTTGTCCTCATCAC
ATGAGGTTTAGCACCCCAGTTTATCCCTACGAGTGACGTGATAGTGACGA
CGtgtcactgaaacaggggtgtaattaAAATATACATTTAATCGAAAGAG
GTATATTATCTAACGTTTATCGATAACTGTAGATTCTTCATCGATAGACT
GGTTTGTATCGATAAGGAAGTTCTATTGATAATTCTATCGTTATATAGGA
TGCACTGGAACGAAAAGCATTCGTCGTGGACACACAAACGGTCAGTCATT
CGTCATGAACGGTCTATCCGTTTGTCACGAACGCTTTTCGCAGCTTTTCG
AGCGACTTTCTTTTAAAGCGTTCGTCATAAACGCTTTCTAGATTTTGACT
CATTCGCGACGAACGCTTTAACAGGGAGGCGTTTGTCATGAATGCTATAT
GATATATGACGAATGCCAAGCGTTCCCGACGAATGCCTTAGCGTTCACGA
CGAACGACGAACGCTTTGCTTTTAAACGAATAGAGACTTTCCGCAGTCAC
AACGAGAACGGCAACGAGAAAGGCAAaactacaatcagggacaaaatatt
tggcacaaaaaggaaattcaccggggtgttttgaaaccacaatcgatttg
taagtgctctaaagtaggttcgaaggNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaatcaagttgaaggc
ctaaaaattgacattctcgctcgaacttcaattttcgaaaaattgtaaat
tagccaaaagtgccaatatattatgaccctgattgtagtaaaataacata
taggtttgaaaaaatagagaagttGCCGTTGTGGCTCATTTTTGATTCCg
caattatttttcacaacGACAACGTCtatcattttttaaaagtaacgaaa
aacgaaaaatactggagaaaatctcgaagcttttctttttcaatgcaaAC
TAAAAATACTGTAATGATTAGAATTATTTTGTAATGTTATTAGTAGTAGT
AACGAGATTAACAAACTGAACAAATTTAGAATcaggatttcaaaaaattc
aatactTGAAACTTACACATCTagcacaagaaaaaaagctaaaaaatgat
caaaagtttaaagattctgaaatataattttcaaaattgtcttaCTTTTT
GCTTGATGTTGATTTTTATGTTAGAAATCTCATGTTGTCTGACAACGCCA
AAATGAGTGATTTGCCGTCGGGCACGAGAAGAGACAACGAGAACCAGTTA
TTATCACAAGAATGAGGAAATAGCTCAGAAGTTGCAGAAGTAaaacagtt
gacgctctcttattcgattttcaagggcaattgcctgtctcacagcccca
gtggaacttttttccagtggggataaagattCCAACTTAAATTTCAATGG
GGATagcaattctattgttctaaggttTAAAATTTAATCACTCTTTAATT
TAGATCTGGCCTATGCTTGGAAGGTGTAAAAAGGGAGTATACCTCCTCCA
ATACCATCCTGATCAGAAGAGGCTTATTAGTATGTTTTTGCTTATCTTTT
CAGTGAAGatttatgaaataaataaaagaatcttTCTTAATTCGAGGCAG
TCATTACGAGgacaaatttttgtataaaaaagataagaaagatCGAAAGT
AATAAATTTTAAAGTACTGAAAGATTGCAGAAATGATCAGTTCCGACTAC
GCATATTTTCAATGTTTCTAGCCACTTTCAGACTCAGGATATAATTTCGA
AATATAATCTATACTACTAGGGACCgcgaaagacgggggtaaaatggttg
gaatcgaccaaaatgttgtttttaggttttagacCACCTATAACCATGGG
ATGAGTTTTAGAAGCATTCTTATCATTAAATAAATGTCCTGTAAAAGTTT
GGTGGccataactttattttttatgaaaatatgagcaattttgtaaaatt
ttgaatggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTGatgaatgacccctcattttttttcttttttgatgctcTTT
CCAATGAGCATGGTTTCAATGcgctaaaaacaatttgaaaaaatcattgc
ggTCCCTAATACTACTATAGAATGTgaaattgaatttattttttacattt
ttgtaaAGGTCTTTAAAGcgttaattaaaaaagttaaggcAGCTCaaaga
ttttgttcaaaattACCTTTAATGTGGATTAATTTACgcaaggaaaattt
tgaaatgtttgaaaccaaaattcttgacaaaaacgCTGGTTTTACTGCTA
CCCCCACGGGAAAGAAATTGATTGAAAGGGGGACTGATTTACGAAAATAA
GTCCCTCGAAATTATTGTTGAAAAGTCGTCACGTGAAAATAATCTGCTCG
CGAAAATCTATTCACTTAAGGAAACAAATCAAATAGGAACAAGTTGAACA
AGAAATCttgcttttttctttagaaagacAAAAATCGTTGAAGCAGCCAT
GATTTAGTTGATCGTTTTCGTTTGAAGATGACATGGTTAGTGAATTTCAA
AAGACAAATCGAGTGACAATTTTCAAATTAAGATAGACACTTCAGATCAC
AGCAGTATTTAGTTGGATATAAATTTGTGTGTCTAGTGTCTTAATGGACT
TTCAAGCTTAACTGggtagaagctacttccaacgccttttttcttcacct
aaaatcgtaaggaaagacatacagatttctgtatgtctgactcgtgcggg
attgcatttatttttctttctgtttattgcgtttttagaaatgctcattt
acttatatgttcccatgttcaatgttactgtgaaatatcatttagtcaaa
aaagttggatggattctcaaaaacctaacaaaaagttgtaaaattaaaca
acgttttttgagggaagtagcttctagtcgttgaaattcagaaaagagac
gcaacttcaccccttcaattttttttatttggagcttgattttttgtata
tgcgtctgttttcaacgactagtttactagtctaggtaTTTTCCTGCAGA
CAGTTAAGTCCTTTTAATCGTACACTCCATTATGCccagtctctcaaaaa
caaaaatagagTACACGTTGTaagggttgtttttttttaagaaacacact
tttaagaaacatgaggctcagaatgcctaaaaactaagaaacaactaaga
aacatgctgaggctcagaatgagaaaaaaacatttttaacacggtttttt
tagaaccttccaatctttgcaagaaaaataggctgattatgtcaaaaagt
ttagaaacaggtaagaaacatttaaggctcaaaaggccgatttcttaaga
aacattgaggctgcttggtaaaactagtttcttaaaaaaaaacgtgtata
cgaGTTCGAATCTTGGAAAGATAATCCATAAAATAAAAAGGCCCAaagat
ttcttaaaatttgattttcatcaggggggggggcaagcagttagtacaga
aCACtatgtgtactaactgatttttggaaaaatctgtaCCCCACCACCAC
CCCCTGTCACTTAGTACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGtgtatttttacgtttttac
ctGTCTTTAACAGGTTTTTACCACTAACtactttcaaataaataaaaata
taacaaaatatgGATTAAGTCAACCGCAGTGGGGTGGAAAATTCTCGTTT
TGAAAAcagttaatacaccttttttcttccaaaattctGTATACACCACC
CCTTTCGGCAGTTAGTACACAGGTGTACTAACTGtattttgcaaatttga
aaataaacacCACCCCTTTTAACAAATTATGGACTAGGTCAACCGCAGTG
GGGAAAAATTCTCGTTTTGAAAAcagttaatacaccttttttcttccaaa
attctGTATACACCACCCCTTTTGGCAGTTAGTACACTGGTGTACTAACT
NNNTCATAAATAAGCGCTGACTGAAAATTACTGTTATAGGCTCAAATTCG
TTTCCTCCTGGAAATTGAAATGTTACAAATCGAAGGTTTCTCTATTTAGC
AACATGTTGGGGAGAATGACCATAATCAGATGATGCttgattatcatttt
ttaatttggatTTGATACATTTGTTCATATCAACAAGGTCATCATTTATG
GGAATCCCATGGAAATTCACTTTGTAGCGTAATTCATTGCGCTCACCCCC
AGTTCTGCTCTCTGctgcaaagaaaaagaagataatACAATGTCATTTAA
AAAGATCAAATAGGCCGCCACTGAGCAacattttttctcctttttttgca
acattcagaagaaaaagaagacattccaaTGTTTATTACCTGATAGAGAT
TTCCCACGCTCTTAGAACCGTGCTTCACTatctttctctgattttcagtT
TTACAGCATTGTCGAAAATGAAGGATTGAAATTTAGTACTTTAGACGTGC
AAAGTTTCGCGAGGTCGAAGAATCacgaaatttacgacatttactttcgc
gagcaTATACTTCTATTTTGGAGAATTGGAGAAACTTTGGTCTTTTGACT
ttaacaggctaaaaagtgccataaatctTACATCTTATTTTAAGTTAGAC
GTCTTAAGTAcatatcttttatttattttaataagAATTTTCGAAGATAT
TTACCTTAGCGAAAAGGGCTAAAGTAAAATTCCtgaaaatcgcaaaagtt
tctgctcgcaaaatTCTGAATGCCTAAAGTAGTACGTTATTTGTCCTAAA
ACGatcaaaaaagcttgtaaaacaCAACAAAGTTTGCAAATGAATAATAG
TTATTATCAGGGCTGCAAATAGGCGTCGGTCAACGGTCAATGTAAGACTG
AAAAAGCCTTTTGACCGACTGAACATCTTTTGTGTTTgtcatgatgtccg
aatgaaaaGAGGGataaaccattaacttgagaagtgaaaataaattctct
tacacccctgtctctagactatgctatagtctatgacgaatcactatcta
agaaaaaagcccaaagccgaataaaaaaattcgcaaacggttttttttgc
cgaaaagaacAGAGGGTTTAACCGAAAAAGTTTACGTACGTGAAGCAAGG
GGTATTCAAAGTGTACATATACTTTCAGAATAGGGTCCCCGATGTCCCGC
CATCTAATGTTTGCTTCTTTTCATTCACTGGCAAAACCATTCTTTTAACG
ATGCACCGAGACGCAAATTTACAAAGCAAAAGAAAACAGGGTAAAAATAT
CAACGAAAGtaattttataagtttcgaagtTGCTCTACCATTAAAattaa
aggcaaaaaaatcTCCTTCTCTTTGAACTTAAATTAGATATCAGGTCTCT
TTgcttttttccttgaaaatttgcgaaattaatTGATTGACAAGCTCTTG
CAACATTTTCTACTCTCGAAAGAAGACATTACAGTGTCGCTAAAAAAGAG
ATTCCCCAAAGCCGTGATCTAGGTaaaccttagagagactttgggagggt
gaCCCAACCCTTAAAAGGCACGCGTCATACCCAGCGCCCATATTTTTTCT
GAAGTATCTCCTCCCACCGGGGGTTCAATCATAATCATACTAAGAAAAAA
ATAGCCGAAACACTGCTCAAGTTTGTATTCAGTTCATTTGCGAGACAAAT
TTTTTGTAATGCTCGTATCTCATCTTGCTGAAACGTATCTTTGACTTCTC
TTTACTCTTTACTccatattttcaaacaagaacGATTGACTCAAGACTAT
GCTTCTTGCCGTGTTGCTTTAACGATTTGTCTTtctaaaggaaagaaaaa
agagtgagCGTTTGTGACGAACACTTTAAAAGAAAGTCACTTGAAAAGCT
GCGAAAAGCTGCGAAAAGCGTTCGTGACGAACAGATAGAACGTTTGTGAC
GAATGACTGACCGTTCGTGTGTCCACGACGAATGCTTTTCGTTCCAGTAG
TCACTATCTTATCGCGGATAAAATATATCGTTTGAAAGTCTTTATCGATA
ACGTTTTATAGTTGAAGACATCGAtaaatcaattaatcaatcaataacta
aatcaattaattattcctgattatttttgatgcttcaatctttaaagcat
taaaagctttataagtgcatgacatgaccttttagtaggggcatttagtg
aaagctatgactagtaataATTTTAGGGGGCGAATAATGCAATGAAGGCT
CTGGATATCAGAACACGCCATTTGTATAAAGAAATTAATGGTAATAATAT
GtagtctcctagaagataagaacacatttCTAATAAATTGCTTTGCCGGC
TGTTTCATCATACGGCTATGGCATTGTTGAATCACGGCTTTTGCGTCTTT
GATGacattgtaatgtcttctttcGAGAAGAGAAAACGTTACAAGCTTTT
CAATCAattaatttcgcaaattttcaagtaaaaagaaaagagaCCTGATA
TCTGATTTAgcttctttgcaaattttggtCTCAGTACACTGATAAGAACG
GTTTAGCCAGTGAATCAAATGAAGAAGCAGGTAGAGTACTTTTATGGAAA
TCTTTTTATAAATCATAGCAAACACTTCCAGATCAAAAGACGCCAAAAAA
ACACGCTGGCATAGCTTTAGGTATCTATTATGGCAAATGCAGCGTAAATT
TACCTAGAACTAGAGGGGGTCGTCATGACTAATTCGATTCAGAAGCCTTC
AtgagtgagggtggacgaactaaaatcagtcgcTTATAATAAGTGCCCTA
ATGAAAGTGCAAGCACGGAGTAGTTTTTACATCGCATTAAACATCTTTAC
TCTGTTTGAAGCATTTTTTAATTGCTTTAAAAGATTTTACTCGACTCAAA
TATTCTTCAATCGCCtcgaatatttttcaatcaccTCGAACAATTTTCGA
TCACctcaaacttttttcaaccacCTCGGACATTCTTCAATCGCATCGAA
CATTTTTTGATCGCCTCGAACATTTTTGAATCGACTCGAACATTTTTTAA
TCGACTCGAACATTTTTTAATCGCCTCGAACAATTTTTAGTTGCATGGAA
CATTTTATAATTGCCTCAaacatttttcaatcgcttcGAGCATTTTAATC
ATAGTCTCGAATATTCTTTAATCGTTACGATTGTTTTTTAATCGCAACGA
TTGAAATATGTTTGTTTCAAGCATTTGGGTGTTTGTAACATCCATTGAAG
TGTTCAATACAAACATACGCGTGTTCGCGTGTCCTTTTCGAACACTTTTG
CACTTTCTAGTGaaggtaggtcaaacattttcgttaaaatatctaagttt
gaacaataaatattgaaatggactatttttcacatttctttagttcatta
ggaataaaaaaataccctatcatcataacttaattccaataggtttcgat
ttagagaggatttatttaaaaaatgtctcaattcgagtagtatccaatca
acttcgattcagattttcgcctgaaaaaatcaattcaagttaaaatNNga
aacaactttttatgaagttgaactatcgttaaggctacaatgctaaaaaa
tgagaaatctacattctcggggtttactacattctcggggtcaggtgctg
tacctGGATTTTGATCGGAATTGCCAAACACCGctggaaaaaataattat
ttcggAGGCAAGAAAAGATTTAAGAATGAATGTTGTCTGACTGGGGTAat
gaaaattttctggaatggcccaatgtttAGCATGTAGGAGTCTCCCGTCC
AATGTGGGAGAGCTGTCAGCTATGAATCTTTATTggaaaatcctcaaaat
ttcctctattttcttgaaaaatgtgTGCAAAAAAGTGATGTACCTCAATT
ACGATAAAAAATAACTACTGCAATTGAGGGAATTCCTTGACTGAaaaata
ttagaccaactttcattttctcttttatATTCATGTCTCTTTTCTCTCca
aagaattttaaatttttctgagcaTGATTAATTTTCTGTCCTTTCTCCAC
CCAAATAACCTNTTCTCTTTTATATTCATATGTCTCTTTTCTCTCcaaag
aattttaaatttttctgagcaTGATTAATTTTCTGTCCTTTCTCCACCCA
AATAACCTCAATTGAACCGAATCAACGATACACCTTTCCTGTGATTTGCA
AAATAGATGCGCGCACATTTTTTGTTGTTCTGAACATAACTcgtctacag
gatgtatttgtgTAACAATAGGGAGGGAACTTAGAAAAAGAACATTGGAA
AGAATTTAGTGGCATatgtataaaataaaaagaagagaaaataaatcaat
ttataatactttttttttttaatttgtaaaaatattcaaaaatcagTACC
CTTTTGacaggaaaattttcaattttagtttcCTACATAGAGTAACctat
gaatttgtaccccttagAGGGACTTTGAGAAAGGATTCCCTTATGGCTTG
CACATATAACTGTCACCTGTTTTGCTTTAAAGTATCTCTCCCTGGAAAGT
TTCTCAGTTAGCACTTCAATTTATCGAACCTTATGATTACGTGGTACTAA
TTTCAAAACCCTTCTTTAGAGCTTTAAATAATAGGAAGCTtggaattgct
gattgaaactatCGCTCTTTGTTTTTAGCGATCAGAgggggaaaatattt
tttcaatcagtTTCAATCTCCAAAGAAGTAGAAAGGTGTAGATGCAGGTA
TAGATGAGGGATGTCCACATTTCGCTCTTTGTTTTTAGCAATCAGAgggg
gaaatatttttttcaatcagttTCAATCTCCAAAGAAGTAGAAAGGTGTA
GATGCAGGTAGATGAGGGATGTCCACATTTCGCTCTTTGTTTTTAGCAAT
CAGAgggggaaatatttttttcaatcagttTCAATCTCCAAAGAAGTAGA
AAGGTGTAGATGCAGGTAGATGAGGGATGTCCACATTTCCACTCATGTCT
TTTACCCaaggatgcttatgcctcaggaaaagaAATCCCCTTGAAATCCA
GGGAAAATCCTCAAGagcgaaatcttaaaaaaaatgactGACAGTGATAA
TGGTCATCAAAAGTGCAGTACACAATATAATCTTTAGCCAATACAAAACT
TCTCACAATAGGGTAATGGTAAAGGTAATGGTAAAATTCACCCTGCTCAC
CTCTGGTATAACTACTGCTGGTATGAGAACCATTTTAATAAGCTTAAGTA
TTTCTTTAGTTTTAAAATGACTGAAAAACTGAATGATGAAATACTTTCTT
ATGCTGTGAGTTCCATTTTAAACAGAGACACCAAGCAGTACggcaaaaaa
tttctttttgatggCGAAGATGACACTTGCTGGAATTCTGATCAGGTAAG
TTCTTCATCTTGTTTCAAACAGGCTGATGTTCATCCATTTTCTAAAGAGA
TTCTTTCCCTGACCATAAAATAGTCAATgtgaaaaaattgacttttctaG
CACTTTGATTTATGGTTCTAGTATGGTTCAATTGCATATTATAAAGTTCT
GTAGATTTGAGTCTCCTATCCTGGCCGGTCAGATCATCATATTAAAATTG
TATAATAATTGCAATATACCAACGTTATAATATATTATGATAATAATTTG
CACCCattctatttttattattaCCAAGGGTGACAGCCAGCATATCAGTT
TGAAATTCAATTCCAAAATTACGATTTCAAGGATAGAAGTTCAATTTCAA
GGAGGATTCTCAAGCAAACAGATTGATTTATTGGACTTGGCAAATGACCA
AAACATACTCACTTCATTGTACCCTGAAGATGTCAATAACAATCAGATAT
TTGAGCTCGAAAAACCTGTTTCGGTGACAATGTTGAAATTGAATCTATTG
AAGCCGACAGATATGTTTGGGAGGATGATTGTTTATAACCTAAACATATA
TGGTCTCAAATAAAGTTATCCAAAATGCATTTTATTAAATGACATTGGAT
TCAAAGGATTGATCGGTGGAATAATAAgtaaaatcagcaaaaaagtAAGG
CAAAAAGTGAAACTTAGTAAAAGGTACTGGTCTCGATTGTGCTTATGTGA
AGCAATATGTTTCATCAACATAACGTGCAAGCTCAAAATCCTTGCTTATG
GAGAATAATGATGAATATTTTGTATTTGCCATAGTATAGCATATCATCAT
CATATCTACATTATTTCAATGAATGAAAACAGTATCAAAGGATAGAATTT
GTCACTTAAATCTGGTTGGTTTGGTTGttttaaaaatggatttttatagt
attttaaaatttcacttaTTCTATTTAtgtatttattaaattttaaataa
tttcagATTGCTATGATTTAGA Coding sequence (CDS) from alignment at sc0000559:168807..185728+ >TCONS_00025993 ID=TCONS_00025993|Name=TCONS_00025993|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at sc0000559:168807..185728+ (Clytia hemisphaerica)
ATGACTGAAAAACTGAATGATGAAATACTTTCTTATGCTGTGAGTTCCAT
TTTAAACAGAGACACCAAGCAGTACggcaaaaaatttctttttgatggCG
AAGATGACACTTGCTGGAATTCTGATCAGGGTGACAGCCAGCATATCAGT
TTGAAATTCAATTCCAAAATTACGATTTCAAGGATAGAAGTTCAATTTCA
AGGAGGATTCTCAAGCAAACAGATTGATTTATTGGACTTGGCAAATGACC
AAAACATACTCACTTCATTGTACCCTGAAGATGTCAATAACAATCAGATA
TTTGAGCTCGAAAAACCTGTTTCGGTGACAATGTTGAAATTGAATCTATT
GAAGCCGACAGATATGTTTGGGAGGATGATTGTTTATAACCTAAACATAT
ATGGTCTCAAATAAATGACTGAAAAACTGAATGATGAAATACTTTCTTAT
GCTGTGAGTTCCATTTTAAACAGAGACACCAAGCAGTACggcaaaaaatt
tctttttgatggCGAAGATGACACTTGCTGGAATTCTGATCAGGGTGACA
GCCAGCATATCAGTTTGAAATTCAATTCCAAAATTACGATTTCAAGGATA
GAAGTTCAATTTCAAGGAGGATTCTCAAGCAAACAGATTGATTTATTGGA
CTTGGCAAATGACCAAAACATACTCACTTCATTGTACCCTGAAGATGTCA
ATAACAATCAGATATTTGAGCTCGAAAAACCTGTTTCGGTGACAATGTTG
AAATTGAATCTATTGAAGCCGACAGATATGTTTGGGAGGATGATTGTTTA
TAACCTAAACATATATGGTCTCAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025993-exon-sc0000559-1491911889:168807..168978 | TCONS_00025993-exon-sc0000559-1491911889:168807..168978 | Clytia hemisphaerica | exon |
| TCONS_00025993-exon-sc0000559-1510915933:168807..168978 | TCONS_00025993-exon-sc0000559-1510915933:168807..168978 | Clytia hemisphaerica | exon |
| TCONS_00025993-exon-sc0000559-1575043694:168807..168978 | TCONS_00025993-exon-sc0000559-1575043694:168807..168978 | Clytia hemisphaerica | exon |
| TCONS_00025993-exon-sc0000559-1491911889:184616..184751 | TCONS_00025993-exon-sc0000559-1491911889:184616..184751 | Clytia hemisphaerica | exon |
| TCONS_00025993-exon-sc0000559-1510915933:184616..184751 | TCONS_00025993-exon-sc0000559-1510915933:184616..184751 | Clytia hemisphaerica | exon |
| TCONS_00025993-exon-sc0000559-1575043694:184616..184751 | TCONS_00025993-exon-sc0000559-1575043694:184616..184751 | Clytia hemisphaerica | exon |
| TCONS_00025993-exon-sc0000559-1491911889:185035..185728 | TCONS_00025993-exon-sc0000559-1491911889:185035..185728 | Clytia hemisphaerica | exon |
| TCONS_00025993-exon-sc0000559-1510915933:185035..185728 | TCONS_00025993-exon-sc0000559-1510915933:185035..185728 | Clytia hemisphaerica | exon |
| TCONS_00025993-exon-sc0000559-1575043694:185035..185728 | TCONS_00025993-exon-sc0000559-1575043694:185035..185728 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000559 | supercontig | sc0000559:168807..185728 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008979 | Galactose-bd-like |
Blast
BLAST of TCONS_00025993 vs. Swiss-Prot (Human)
Match: NR2CA (Nuclear receptor 2C2-associated protein OS=Homo sapiens GN=NR2C2AP PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 3.957e-31 Identity = 60/139 (43.17%), Postives = 87/139 (62.59%), Query Frame = 3
Query: 180 MTEKLNDEILSYAVSSILNRDTKQYGKKFLFDGEDDTCWNSDQGDSQHISLKFNSKITISRIEVQFQGGFSSKQIDLLDLANDQNI--LTSLYPEDVNNNQIFELEKPVSVTMLKLNLLKPTDMFGRMIVYNLNIYGLK 590
MT L VSS+LNR+T+Q+GKK LFD +++TCWNSDQG SQ ++L+F I +S++++QFQGGFSS++ L Q + + YPED N+ Q F + V LK+ TD FGR+++Y+L + G K
Sbjct: 1 MTHSLVCPETVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVSQLQIQFQGGFSSRRGCLEGSQGTQALHKIVDFYPEDNNSLQTFPIPA-AEVDRLKVTFEDATDFFGRVVIYHLRVLGEK 138
The following BLAST results are available for this feature:
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