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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025878 ID=TCONS_00025878|Name=TCONS_00025878|organism=Clytia hemisphaerica|type=transcript|length=2237bp
NGAACGATCGAATCCTGTACTAAAGCCTTTGCAGAAATGCACGGTAAACA
CGTCAATGGAAGCAAGATTGTCGTTGATTACGCCAGCCCTGCATGTCGAG
AATCTTATTACAATCGAATGGAGAAACACGGCTACCTTGACCGCCGTCAA
CTAGAACGTTCACCCACGCCCCCTGATGTTCACGTTAATTACCCCAACGC
CACACGAACGGGCGGTTCTATATCTAATAAAGTGTACCCTAACCGGGTAT
TTGATGATAAGGATAGGTTTTCAGATAATCGGTACGACCGGGATCAAATT
CGGAACCGAGGATCGCCGATTCCGAGACGACGCTCACCGAGTCCCCTTGC
AGATTCTTATGATTCTCGGAAACGAAAACTAAGTGCCGATATTATGGCGA
ATTCTGATGGAGAGagcgaaaagaagaagaaaaagaagaagaagaaatca
aaagatGAAGAGGAGAAAAGGTTGAGGAAGGAACGAAAGAAGGCTGAAAA
GGCAAAGAAAAAAGCCgagaagaaagagaagaaattgaagaaattacGTG
AGTTGGAAGAGAAACGTGCTGCCGAAGAAAAAGCCAATACTGCTCCAACA
TTGTTAAATGACCGAGCACAAGAAAGCGACCATAAAGAAAATGACTCGGC
ACATGAAAACGGAGGTATTTCAGACGTTTCTCAAGTGACGGAACCGAACG
AAGGTGCAAGTGAGTTAAGCGAAGCTGAGATGACAAACGAAGATAAACCA
AAAGAAACGTCGGTTGTTCCCGATGAGAAACCTCCGGAGACGACCGAGTC
TGTGATCGAGTCCGGTGAAATTAAGGATCCCGAAAAAGAAGAAcgagaga
aaaaaatcaccGAGGATTCCTCCGACTCTTCCGATTCAAGTTCGTCTTCT
TCCGATTCGGATAGTGATGATAGTTCTGACGACGATCGCTCTGCAAGAAA
GCGAACAAGTAAGACCCGATCATTTGAACCGAAATCTTATCGGCAAGAAA
GTGACGGAAGAAGCGATTACCGCGAAGGCAGTCGTGAATCATTTCGAGGC
TCAAAATACTACACAAGCCGGAGTTCGTCACAAAACGACCGCTCACCGAG
AACAAAGTCGCGGTCGCGCTCGCCGTATCGTCGAGAACCGTCGTACGATC
GTAGCCATGACTCACCCCGTTACTCTCGCACTGAATCAGTTCGAAATATC
GAAAAACCGAAAAGTTCACCTCCGCCCTCAGGCACACCCGGTGAGAGAGC
TCCCTCCAGGAATGCGGATACGTTGATGGATCTTTTACGGCGTTTTCCGG
TGATGTGGCAAGGGTTGCTGGGTTTGAAAAATGAGACTGCTGCTGTCCAA
ATGCATTTCCTCTCAGGTAACTTGCAACTTGTTGACCAATCGTTACCGAG
ATCTGCACAGCCAAATGAAGTTCCACCACCATTGCGAATTTCACAACGAA
TGAAATTGGAGCCATCACAACTGGAAGGTGTAGATAAACGAATACAGGTA
CAATACAATTAANAGTTCTGACGACGATCGCTCTGCAAGAAAGCGAACAA
GTAAGACCCGATCATTTGAACCGAAATCTTATCGGCAAGAAAGTGACGGA
AGAAGCGATTACCGCGAAGGCAGTCGTGAATCATTTCGAGGCTCAAAATA
CTACACAAGCCGGAGTTCGTCACAAAACGACCGCTCACCGAGAACAAAGT
CGCGGTCGCGCTCGCCGTATCGTCGAGAACCGTCGTACGATCGTAGCCAT
GACTCACCCCGTTACTCTCGCACTGAATCAGTTCGAAATATCGAAAAACC
GAAAAGTTCACCTCCGCCCTCAGGCACACCCGGTGAGAGAGCTCCCTCCA
GGAATGCGGATACGTTGATGGATCTTTTACGGCGTTTTCCGGTGATGTGG
CAAGGGTTGCTGGGTTTGAAAAATGAGACTGCTGCTGTCCAAATGCATTT
CCTCTCAGGTAACTTGCAACTTGTTGACCAATCGTTACCGAGATCTGCAC
AGCCAAATGAAGTTCCACCACCATTGCGAATTTCACNCAATATTTGacca
tcatcactgtgaaaaaacgtttcaaaaatattcattcaatcaaaagatat
cacaCAAAGTTTGTTATTGGTTGACTGACAATAGcctgtttttttttcgt
tttttactactttatagagtcaaccagtaataatttttgtttgatatctt
ttgattgaatgaatatttttgaaaaatcttttaacag Run BLAST on NCBI transcript from alignment at sc0000550:200885..207887+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025878 ID=TCONS_00025878|Name=TCONS_00025878|organism=Clytia hemisphaerica|type=transcript|length=7003bp|location=Sequence derived from alignment at sc0000550:200885..207887+ (Clytia hemisphaerica)
NGAACGATCGAATCCTGTACTAAAGCCTTTGCAGAAATGCACGGTAAACA
CGTCAATGGAAGCAAGATTGTCGTGAGtgattttttatctgttttggcaa
aaagtagtttttcccaattttttaaaatgtGATTTCATTTTGCATAAGAT
TTCACTTCCCGTACTAGGATTCCGCTGTCTTTCCTGAGATTCttccgcta
tttttcccgggATAACCGGCATGAGATTAGAAAGGGTTTTTTCTAAAGTT
CTTGTTCTTGTTCtaaaaatcttgtgtttacttacGAAACGGCGTGACTT
tcggaagctcatttttcaaaagattttgtcttcttgttttgtctattttt
ggacctacctggaggtcctataaattaacctttgtccgtccgtccgttcg
tccgtccgtctgttaccagcttttctcaggattggctcattagttttttc
tgatttttggcacaatgatgcaaaatggcaatNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNggaaattccctttaaccaaataagaaaatata
gcttttctcaatgttgactcattattttttttgattttttgcacaatgat
gcaaaatggcaatgcctaaaacgtgacgaagcccgattttcgaaaaaaaa
catatttgggcaaatttgggccaaaaactgcctaaaaatagcgttttttg
gactttgtgcaaaatcctgtcattacttttttctgattttttgtacaaag
atggagggcaagattctctaaagaatggctgaagtggtttttcccggaaa
attcttattcgtcttaaaaaacggattttcgtattttggggagattccct
ttaaccaaataagaaaatatagcttttctcaatgttgactcataggACAT
GTTCATAAATGGTGAGTAAAATGGAgacatttgaaaaattgcaaaaaata
gaaaatttaggATAATTTTGTAACAGATCAATTTTTATTAACCAAAATTT
CACAGAAGCTGACAATTACCATTATCCCCAGTGTGAAAGTGGTTTGGGGA
CTTATTATACATTATAAGGCCAGTTATTGGTAAAAATGTAAcaattgtaa
cttttttatcAGAGAATAAAAATTATGTTATTCAAATAGTTTAAACTAGC
TGGATTGGCTAGGTTAATCTGTTTTCGAACCAAAAAATAATAAGGGGCAA
TAATGTAACATACTTCCCGGCCGAGAAAAAGGTAAAATAGTAACAtcgtt
gaaaaatataaaaaatctcttGAAGTATAAAATAATTCAAGCTAAGAACA
AATGACTTTCTCTTATTTGGATTTGGGCTTGTACCAGTCATTACTTGTTC
ATAGGACATTGTTTTTTACCTCAAAAAGGCCAAGATTTTGGTAAAAAAGT
AACAATTACGTGAACTTGCAAAGTTTCAGACTATAATTAACACATAGCTT
TTATataattcaaattattttaaaaggAAATGAGGACACTCAAGCTGACA
CTGAAAGTGAAttagttttaaaatgttttaaaaatagaatatgCTTTCAG
TGgtaaaaaagtaacaaacaatataatattacgTTATAGTAAATTTGATA
TGAAGAAGTTATACAAAGTTAACAAAACTAGTCATTTAAGGTCTAGGTAA
TAAATGTAAGCCAATGGCATTTTCTTTTGGACTTTATTCATTACCACTAC
TTATTTGTACATAGGGGATGTTTCTAATCCTAAAAAGGCcagaaatttgg
taaaaatgtaTCTTAATCTAGAGCTTACGAAGTTTTATGACAAtgacaaa
aatagaaaaaaatgaaaaagtgttACTTTTTTACCAATATACAACCTctt
aataacaaaaaattaacataaaaaCCTATGAACTTGGTTGCTTGTGGTAT
CATTATTTGTCTAAAGTGATCAAATGTGATTTCTTATAGCATTTAAAGGT
TTTCTGGATTAAAAATGTAACAGCTATGATATTTAGGCTATTATAGTGAA
TGTTTACTTGAGTGTTACAAAATTACCTTATTTGAACCTTTTTTCAAGTT
AAATTCTGAAACAATCAAATCTTTAACACATTTCAAATCATAATATGACA
ATGAACAATTTCAGTTTTTATAGTTTCTTTGACTTGGAGGTCCCAAAAag
taacaattttcaaaacttaaagtGTTACTATTTTATCAAATTGTTGCCAT
TGatgaataaaattcaaaactaaCGTCACTTGAGGTCTATATTATTATGT
GTAAAAATTTGGTGACCTTATTATAAGTTTTCAGAGAGTTCTAAAACTTA
TTATCATTTTGAGGATTTGTGGACTgttacttttttatcattttctctgC
CCTGAAAGAAAACCTTATATCTTTAGTTTTGATTACTCAATCATTGATAC
ATTATTATCATAGGAATTCTGAGCTATCTGGCTTAACGACTGAATTGTTT
CTGGCCTCTTAggttttgttacatttttatcatagGTAAATTTGTAACCC
TCATTTCAAATGTCTCCAAAGGGGATAAATCTACTCACCATTTATGAACA
TGTcccataatttttttctgattttttgcacaatgatgcaaattgacaat
acctaaaatgtgacgaagaccaattttcaaaaaacatttttttccggccg
aaaatgccggaaatatgccggaaaaactggttttttggcattttctcaag
attttataattggttttttctgattttttgctcaaagaaagcagaagaaa
gatgcgtattaacaattcccaaaacatggccgagttcgatttttgagaaa
aattgttTCCAGttaaaaatgccggaaatcgcaggaaatcgccgtgtttg
cagattttcattggattttttccttatattcatttctatgcttttttaca
caaaaacatttttgataacaatgctcaccatcaagcatgattcaattgtc
aataaaactgaattttgggaccagaacttcctatttattttttccctaca
actgTTCCCTCTCctcccatcaacaatcaatgatgaatttattgtgtttt
gtattttcgctaagcgctatattttctgactgattttttttcatttttct
tttcgcattgctatataactttcatcatcaggtaggtccattcagcatct
agcttgttattcATGTTCTTGTCTTTAGGTTGATTACGCCAGCCCTGCAT
GTCGAGAATCTTATTACAATCGAATGGAGAAACACGGCTACCTTGACCGC
CGTCAACTAGAACGTTCACCCACGCCCCCTGATGTTCACGTTAATTACCC
CAACGCCACACGAACGGGCGGTTCTATATCTAATAAAGTGTACCCTAACC
GGGTATTTGATGATAAGGATAGGTTTTCAGATAATCGGTACGACCGGGAT
CAAATTCGGAACCGAGGATCGCCGATTCCGAGACGACGCTCACCGAGTCC
CCTTGCAGATTCTTATGATTCTCGGAAACGAAAACTAAGTGCCGATATTA
TGGCGAATTCTGATGGAGAGagcgaaaagaagaagaaaaagaagaagaag
aaatcaaaagatGAAGAGGAGAAAAGGTTGAGGAAGGAACGAAAGAAGGC
TGAAAAGGCAAAGAAAAAAGCCgagaagaaagagaagaaattgaagaaat
tacGTGAGTTGGAAGAGAAACGTGCTGCCGAAGAAAAAGCCAATACTGCT
CCAACATTGTTAAATGACCGAGCACAAGAAAGCGACCATAAAGAAAATGA
CTCGGCACATGAAAACGGAGGTATTTCAGACGTTTCTCAAGTGACGGAAC
CGAACGAAGGTGCAAGTGAGTTAAGCGAAGCTGAGATGACAAACGAAGAT
AAACCAAAAGAAACGTCGGTTGTTCCCGATGAGAAACCTCCGGAGACGAC
CGAGTCTGTGATCGAGTCCGGTGAAATTAAGGATCCCGAAAAAGAAGAAc
gagagaaaaaaatcaccGAGGATTCCTCCGACTCTTCCGATTCAAGTTCG
TCTTCTTCCGATTCGGATAGTGATGATAGTTCTGACGACGATCGCTCTGC
AAGAAAGCGAACAAGTAAGACCCGATCATTTGAACCGAAATCTTATCGGC
AAGAAAGTGACGGAAGAAGCGATTACCGCGAAGGCAGTCGTGAATCATTT
CGAGGCTCAAAATACTACACAAGCCGGAGTTCGTCACAAAACGACCGCTC
ACCGAGAACAAAGTCGCGGTCGCGCTCGCCGTATCGTCGAGAACCGTCGT
ACGATCGTAGCCATGACTCACCCCGTTACTCTCGCACTGAATCAGTTCGA
AATATCGAAAAACCGAAAAGTTCACCTCCGCCCTCAGGCACACCCGGTGA
GAGAGCTCCCTCCAGGAATGCGGATACGTTGATGGATCTTTTACGGCGTT
TTCCGGTGATGTGGCAAGGGTTGCTGGGTTTGAAAAATGAGACTGCTGCT
GTCCAAATGCATTTCCTCTCAGGTAAATCTTTGTACTTTGTACCACCGTA
ACTGCTTTGAGAAACTTTCACAAAATCGGGCTTAAAAGGACAGTTGTTAT
AGAACTTTGGAATACTTGCACTCGAAGACTAGCTATCATTTTACTATAGA
TATCATTTCATCTGGTCGCTTTAAGACCCAAAAACTTATAGGGATAATAt
gaaaatttttgctaaaaGAGTTTTGctataatttatttttaacgTCTGCG
TCTGtttctttctatttcttttacAAGGTAACTTGCAACTTGTTGACCAA
TCGTTACCGAGATCTGCACAGCCAAATGAAGTTCCACCACCATTGCGAAT
TTCACAACGAATGAAATTGGAGCCATCACAACTGGAAGGTGTAGATAAAC
GAATACAGGTACAATACAATTAANAGTTCTGACGACGATCGCTCTGCAAG
AAAGCGAACAAGTAAGACCCGATCATTTGAACCGAAATCTTATCGGCAAG
AAAGTGACGGAAGAAGCGATTACCGCGAAGGCAGTCGTGAATCATTTCGA
GGCTCAAAATACTACACAAGCCGGAGTTCGTCACAAAACGACCGCTCACC
GAGAACAAAGTCGCGGTCGCGCTCGCCGTATCGTCGAGAACCGTCGTACG
ATCGTAGCCATGACTCACCCCGTTACTCTCGCACTGAATCAGTTCGAAAT
ATCGAAAAACCGAAAAGTTCACCTCCGCCCTCAGGCACACCCGGTGAGAG
AGCTCCCTCCAGGAATGCGGATACGTTGATGGATCTTTTACGGCGTTTTC
CGGTGATGTGGCAAGGGTTGCTGGGTTTGAAAAATGAGACTGCTGCTGTC
CAAATGCATTTCCTCTCAGGTAAATCTTTGTACTTTGTACCACCGTAACT
GCTTTGAGAAACTTTCACAAAATCGGGCTTAAAAGGACAGTTGTTATAGA
ACTTTGGAATACTTGCACTCGAAGACTAGCTATCATTTTACTATAGATAT
CATTTCATCTGGTCGCTTTAAGACCCAAAAACTTATAGGGATAATAtgaa
aatttttgctaaaaGAGTTTTGctataatttatttttaacgTCTGCGTCT
GtttctttctatttcttttacAAGGTAACTTGCAACTTGTTGACCAATCG
TTACCGAGATCTGCACAGCCAAATGAAGTTCCACCACCATTGCGAATTTC
ACNCAATATTTGaccatcatcactgtgaaaaaacgtttcaaaaatattca
ttcaatcaaaagatatcacaCAAAGTTTGTTATTGGTTGACTGACAATAG
cctgtttttttttcgttttttactactttatagagtcaaccagtaataat
ttttgtttgatatcttttgattgaatgaatatttttgaaaaatcttttaa
cag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025878-exon-sc0000550-1491911889:200885..200956 | TCONS_00025878-exon-sc0000550-1491911889:200885..200956 | Clytia hemisphaerica | exon |
| TCONS_00025878-exon-sc0000550-1510915933:200885..200956 | TCONS_00025878-exon-sc0000550-1510915933:200885..200956 | Clytia hemisphaerica | exon |
| TCONS_00025878-exon-sc0000550-1575043694:200885..200956 | TCONS_00025878-exon-sc0000550-1575043694:200885..200956 | Clytia hemisphaerica | exon |
| TCONS_00025878-exon-sc0000550-1491911889:205213..206506 | TCONS_00025878-exon-sc0000550-1491911889:205213..206506 | Clytia hemisphaerica | exon |
| TCONS_00025878-exon-sc0000550-1510915933:205213..206506 | TCONS_00025878-exon-sc0000550-1510915933:205213..206506 | Clytia hemisphaerica | exon |
| TCONS_00025878-exon-sc0000550-1575043694:205213..206506 | TCONS_00025878-exon-sc0000550-1575043694:205213..206506 | Clytia hemisphaerica | exon |
| TCONS_00025878-exon-sc0000550-1491911889:206762..207353 | TCONS_00025878-exon-sc0000550-1491911889:206762..207353 | Clytia hemisphaerica | exon |
| TCONS_00025878-exon-sc0000550-1510915933:206762..207353 | TCONS_00025878-exon-sc0000550-1510915933:206762..207353 | Clytia hemisphaerica | exon |
| TCONS_00025878-exon-sc0000550-1575043694:206762..207353 | TCONS_00025878-exon-sc0000550-1575043694:206762..207353 | Clytia hemisphaerica | exon |
| TCONS_00025878-exon-sc0000550-1491911889:207609..207887 | TCONS_00025878-exon-sc0000550-1491911889:207609..207887 | Clytia hemisphaerica | exon |
| TCONS_00025878-exon-sc0000550-1510915933:207609..207887 | TCONS_00025878-exon-sc0000550-1510915933:207609..207887 | Clytia hemisphaerica | exon |
| TCONS_00025878-exon-sc0000550-1575043694:207609..207887 | TCONS_00025878-exon-sc0000550-1575043694:207609..207887 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000550 | supercontig | sc0000550:200885..207887 + |
Blast
BLAST of TCONS_00025878 vs. Swiss-Prot (Human)
Match: MINT (Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.356e-20 Identity = 44/77 (57.14%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 1273 LMDLLRRFPVMWQGLLGLKNETAAVQMHFLSGNLQLVDQSLPRSAQPNEVPPPLRISQRMKLEPSQLEGVDKRIQVQ 1503
++ LL+++P++WQGLL LKN+TAAVQ+HF+SGN L +SLP S E PPLRI+QRM+LE +QLEGV +R+ V+
Sbjct: 3498 MVQLLKKYPIVWQGLLALKNDTAAVQLHFVSGNNVLAHRSLPLS----EGGPPLRIAQRMRLEATQLEGVARRMTVE 3570
The following BLAST results are available for this feature:
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