TCONS_00025916 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025916
Unique NameTCONS_00025916
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025916 ID=TCONS_00025916|Name=TCONS_00025916|organism=Clytia hemisphaerica|type=transcript|length=263bp
GTCAAAAATGTGCAACATGTGTAGGCTAAATCTGGTGTAAATCCCAttca
acaaaacaataaaacaattaTCATCCTGTTgattccatttttattattcA
GTCTAAAGTAAAGTCTATCTCAGACAGAACTATGAAATTATAAAAGCCCA
ATTCAGCCCAAATTTTCAAGATAAATTTTCAAGGTACATATTGAAGCCTT
CTTTTACACTTTGCTGAGGCAGAAATATGTCTGAGATAGAATAACTTTGA
GCACCGATAACAG
Run BLAST on NCBI

transcript from alignment at sc0000550:192433..192695

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025916 ID=TCONS_00025916|Name=TCONS_00025916|organism=Clytia hemisphaerica|type=transcript|length=263bp|location=Sequence derived from alignment at sc0000550:192433..192695 (Clytia hemisphaerica)
CTGTTATCGGTGCTCAAAGTTATTCTATCTCAGACATATTTCTGCCTCAG
CAAAGTGTAAAAGAAGGCTTCAATATGTACCTTGAAAATTTATCTTGAAA
ATTTGGGCTGAATTGGGCTTTTATAATTTCATAGTTCTGTCTGAGATAGA
CTTTACTTTAGACTgaataataaaaatggaatcAACAGGATGAtaattgt
tttattgttttgttgaaTGGGATTTACACCAGATTTAGCCTACACATGTT
GCACATTTTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014574XLOC_014574Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025916-exon-sc0000550-1491911889:192433..192695TCONS_00025916-exon-sc0000550-1491911889:192433..192695Clytia hemisphaericaexon
TCONS_00025916-exon-sc0000550-1510915933:192433..192695TCONS_00025916-exon-sc0000550-1510915933:192433..192695Clytia hemisphaericaexon
TCONS_00025916-exon-sc0000550-1575043694:192433..192695TCONS_00025916-exon-sc0000550-1575043694:192433..192695Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000550supercontigsc0000550:192433..192695 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.76525	1.2239	2.1316	2.78059	2.53882	1.33748	4.84082	7.5532	2.11527	6.55026	5.72205	5.43321	5.42566	2.16715	2.13803	2.67684	4.23984	5.79426	2.00127	1.39612	6.06743	7.10275	0	1.96246	0	0.601318	4.30242	3.67333	2.78609	2.83858
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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