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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025883 ID=TCONS_00025883|Name=TCONS_00025883|organism=Clytia hemisphaerica|type=transcript|length=2693bpRun BLAST on NCBI transcript from alignment at sc0000550:88277..106242- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025883 ID=TCONS_00025883|Name=TCONS_00025883|organism=Clytia hemisphaerica|type=transcript|length=17966bp|location=Sequence derived from alignment at sc0000550:88277..106242- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025883 vs. Swiss-Prot (Human)
Match: DIP2C (Disco-interacting protein 2 homolog C OS=Homo sapiens GN=DIP2C PE=1 SV=2) HSP 1 Score: 424.861 bits (1091), Expect = 2.841e-135 Identity = 209/408 (51.23%), Postives = 283/408 (69.36%), Query Frame = 2
Query: 1400 GEQLLIPDGLPNSFLDAVRRYGTSSNKAPAISVVDHHGKIIYTLLYGKLLSRSYRIAYALLHKVGNPRDGTSIMVEDRVALMYSPDDIVGFACAFYGCLFAGVVPVPIHPPVQKDDAGLQQIGFLLGSCGVHWILTSESCYKSVPREEGGSGIANFKGWPKVNWFLTD--NLGKPQRDWHPPHMSKDKKMAAYIEHTVDKDGSALGVVVTRDSMFMHTVALTQACGYTEGEVMVSLVDFKKEIGLWHSIFASVLNGVHVIFVPPAVQATTSAIWLPLVTRQKATCCIVSSKDLHLSLHTGRDFKDVNLSTLRMLMLADRANPWSLAACDSFVNTFEGKGLRKEVVCPCAHSCSGLTVAIRRPGNPGSTATGRGVLSLTGLSYGVVRVDKEGSLTALTLQDCGMVIPGG 2617
GEQL + P S A++R+GT S KAP ++ +D +GK +Y L YGKL +RS ++AY++LHK+G ++ + DRVAL++ +D F AFYGCL A VVPVPI P+ + DAG QQIGFLLGSCGV LTS++C+K +P+ G I FKGWPK+ WF+T+ +L KP RDW P H+ AYIE+ KDGS LGV VTR ++ H ALTQACGYTE E +V+++DFKK++GLWH I SV+N +HVI +P ++ W+ V + KA V S+D+H +L RD +D+NLS+LRML++AD ANPWS+++CD+F+N F+ KGLR+EV+CPCA S LTVAIRRP + + GRGVLS+ GL+YGV+RVD E L+ LT+QD G+V+PG
Sbjct: 307 GEQLGVVTNWPPSLEAALQRWGTISPKAPCLTTMDTNGKPLYILTYGKLWTRSMKVAYSILHKLGTKQEPM-VRPGDRVALVFPNNDPAAFMAAFYGCLLAEVVPVPIEVPLTRKDAGSQQIGFLLGSCGVTVALTSDACHKGLPKSPTGE-IPQFKGWPKLLWFVTESKHLSKPPRDWFP-HIKDANNDTAYIEYKTCKDGSVLGVTVTRTALLTHCQALTQACGYTEAETIVNVLDFKKDVGLWHGILTSVMNMMHVISIPYSLMKVNPLSWIQKVCQYKAKVACVKSRDMHWALVAHRDQRDINLSSLRMLIVADGANPWSISSCDAFLNVFQSKGLRQEVICPCASSPEALTVAIRRPTDDSNQPPGRGVLSMHGLTYGVIRVDSEEKLSVLTVQDVGLVMPGA 711 HSP 2 Score: 77.7962 bits (190), Expect = 2.841e-135 Identity = 110/352 (31.25%), Postives = 163/352 (46.31%), Query Frame = 3
Query: 345 INLPEEVWDKLRELQLELDEGDITQKGYDKKRARLLSQYIQKDEEDPPGDIASAVTAKHGEVKKSSSISSPRLARVKRXXXXXXXXXXXXXXRKPSNASSISKFSDAGPQ---VPPAIRQEAINLAIQRQKEHEEAGIALPAPTKRQSFVTRKK---NTDPXXXXXXXXXXXXXXXXQQPPTNFHDTPPSSIESLNVSNTQNTPSTIVSPSVDDYSDHELSLHAYPSEPH-ITVVDGQTRIQDLPPPPDLT---SDILLQNEINYQKLKANAQGKGVRLQVEEDEDDNP--SRVSTKIQQLLNTLKRPKKKPMEQFF-QESDDGVEVTSPDPTAPAPEGAQSTPSVGEQLLV 1361
+ LP EV +L EL+LEL EGDITQKGY+KKR++L+ Y+ + PP + ++ R A V PS+AS + +G + + EA+ A+ + KE + +A+P P+KR+S V + T P + + S +SQ TP SS S+N+ ++ S + S + + H + V QT I++ PPD+T S+ +Q E + K ++ E D P SRVS KIQQL+NTLKRPK+ P+ +FF + ++ +EV PDP P PEGAQ GEQL V
Sbjct: 9 MALPLEVRARLAELELELSEGDITQKGYEKKRSKLIGAYLPQ----PP--------------RVDQALPQERRAPVT-----------------PSSASRYHRRRSSGSRDERYRSDVHTEAVQAALAKHKERK---MAVPMPSKRRSLVVQTSMDAYTPPDTSSGSEDEGSVQGDSQ-------GTPTSSQGSINM---EHWISQAIHGSTTSTTSSSSTQSGGSGAAHRLADVMAQTHIENHSAPPDVTTYTSEHSIQVERPQGSTGSRTAPKYGNAELMETGDGVPVSSRVSAKIQQLVNTLKRPKRPPLREFFVDDFEELLEVQQPDPNQPKPEGAQMLAMRGEQLGV 312 HSP 3 Score: 88.1965 bits (217), Expect = 1.560e-17 Identity = 97/385 (25.19%), Postives = 169/385 (43.90%), Query Frame = 2
Query: 1493 SVVDHHGKIIYTLLYGKLLSRSYRIAYALLHKVGNPRDGTSIMVEDRVALMYSPDDIVGFACAFYGCLFAGVVPVPIHPPVQKDDA-GLQQIGFLLGSCGVHWILTSESCYKSVPREEGGSGIANFKGWPKVNWFLTDNLGKPQRDWHPPHMSK--DKKMAAYIEHTVDKDGSALGVVVTR--DSMFMHTVALTQACGYTEGEVMVSLVDFKKEIGLWHSIFASVLNGVHVIFVPPAVQATTSAIWLPLVTRQKATCCIVSSKDLHL------SLHTGRDFKDVNLSTLRMLMLADRANPWSLAACDSFVNTFEGKGLRKEVVCPCAHSCSGLTVAIRRPGNPGSTATGRGVLSLTGLSYGVVRVDKEGSLTALTLQDCGMVIPG 2614
++++ G I +L +L R+ +IA L+ + G+ +DG D VAL+Y P + AFYGCL+AG VP+ + PP ++ A L + ++ ++T++ K + E + + + + WP + TD+L K + P + K + AY++ +V G GV ++ S F ++ L Q Y EV + L D +G SV +G I +PP+ T A+WL V++ K S + L S + ++LS +R ++ P +A SF F+ GL V L + ++ P T + + L + VR+ + GS +L L + G ++PG
Sbjct: 990 TLLNCRGAIANSLTCVQLHKRAEKIAVMLMER-GHLQDG------DHVALVYPPG--IDLIAAFYGCLYAGCVPITVRPPHPQNIATTLPTVKMIVEVSRSACLMTTQLICKLLRSREAAAAV-DVRTWPLI--LDTDDLPKKR----PAQICKPCNPDTLAYLDFSVSTTGMLAGVKMSHAATSAFCRSIKL-QCELYPSREVAICL-DPYCGLGFVLWCLCSVYSGHQSILIPPSELETNPALWLLAVSQYKVRDTFCSYSVMELCTKGLGSQTESLKARGLDLSRVRTCVVVAEERP-RIALTQSFSKLFKDLGLHPRAVSTSFGCRVNLAICLQGTSGPDPTTV---YVDMRALRHDRVRLVERGSPHSLPLMESGKILPG 1352 The following BLAST results are available for this feature:
BLAST of TCONS_00025883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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