TCONS_00025900 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025900
Unique NameTCONS_00025900
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025900 ID=TCONS_00025900|Name=TCONS_00025900|organism=Clytia hemisphaerica|type=transcript|length=460bp
CGTTCGCCGTTATCGTTGATGACCAAGTCTTCGATTACACTGTTCTCTCT
CAAGGATGAATTGTAGAGTGATGCCGAGACATNCGAGTTGTATGCAAATC
AACCAGTTGCTCAAGGACCTTACGGATATATGAATATTGCAGAGATTTGG
ATTTACGGTCGTCCTGAGTGAGAAAGTGTTCTCTCATTTTCATTTAGTTC
CTCAAGATATTGAAGATTGTAGGAACGATACTTTCATTCTTATGCATGGA
ATTTCCCTTATTTAACTCTGAAAAGAACATCAAATATCGAAAAACCCTGT
CATCTGTTACAAAACTCTTACCTATCAGATAGGTTGATAAATTGACTTAT
CAAATAGCGATTTTTGGCATTTTAGCAGTTATCGAAGTACGaataactaa
aaatcgattcactcgaaaacggCAGGGGATTTGAGCGCAAATTTGTTTTG
TCAATTCAAG
Run BLAST on NCBI

transcript from alignment at sc0000550:12331..12790

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025900 ID=TCONS_00025900|Name=TCONS_00025900|organism=Clytia hemisphaerica|type=transcript|length=460bp|location=Sequence derived from alignment at sc0000550:12331..12790 (Clytia hemisphaerica)
CTTGAATTGACAAAACAAATTTGCGCTCAAATCCCCTGccgttttcgagt
gaatcgatttttagttattCGTACTTCGATAACTGCTAAAATGCCAAAAA
TCGCTATTTGATAAGTCAATTTATCAACCTATCTGATAGGTAAGAGTTTT
GTAACAGATGACAGGGTTTTTCGATATTTGATGTTCTTTTCAGAGTTAAA
TAAGGGAAATTCCATGCATAAGAATGAAAGTATCGTTCCTACAATCTTCA
ATATCTTGAGGAACTAAATGAAAATGAGAGAACACTTTCTCACTCAGGAC
GACCGTAAATCCAAATCTCTGCAATATTCATATATCCGTAAGGTCCTTGA
GCAACTGGTTGATTTGCATACAACTCGNATGTCTCGGCATCACTCTACAA
TTCATCCTTGAGAGAGAACAGTGTAATCGAAGACTTGGTCATCAACGATA
ACGGCGAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014558XLOC_014558Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025900-exon-sc0000550-1491911889:12331..12790TCONS_00025900-exon-sc0000550-1491911889:12331..12790Clytia hemisphaericaexon
TCONS_00025900-exon-sc0000550-1510915933:12331..12790TCONS_00025900-exon-sc0000550-1510915933:12331..12790Clytia hemisphaericaexon
TCONS_00025900-exon-sc0000550-1575043694:12331..12790TCONS_00025900-exon-sc0000550-1575043694:12331..12790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000550supercontigsc0000550:12331..12790 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.480116	0.313146	0.190612	0.301249	0	0.170126	0.476437	0	0	0.25427	0.846041	0.488123	0.254214	0.344528	0.742753	0.108757	0.45076	0.471688	1.22995	0.599926	0.732941	0.736699	2.27635	1.89615	1.93813	0.620527	0.313765	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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