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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025819 ID=TCONS_00025819|Name=TCONS_00025819|organism=Clytia hemisphaerica|type=transcript|length=119bp
GCCTTTTAAAATTTCCCATTCACTGTCAAGCTGTTGATAGCGCATGAGAA
GGTTGCACCAGAAGTTTAGAATTTTGTCTGCACCATTGTGGAAAGGGACA
ACATGAGTAAGCTGCTGTT Run BLAST on NCBI transcript from alignment at sc0000549:51426..54597+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025819 ID=TCONS_00025819|Name=TCONS_00025819|organism=Clytia hemisphaerica|type=transcript|length=3172bp|location=Sequence derived from alignment at sc0000549:51426..54597+ (Clytia hemisphaerica)
GCCTTTTAAAATTTCCCATTCACTGTCAAGCTGTTGATAGCGCATGAGAA
GGTTGCACCAGAAGTTTAGAATTTTGTCTGCACCATTGTGGAAAGGTACG
TTtgatatttatttctatatatCCTCTTCTTCTCTTTAAGTCCAGTAGTG
AGCATGGAGAGATGTACCGGGCTTTCAGCAGTCAcgttggaaaaatattt
gtatACATTTCGAAGAATCACACTAACAGCGCACATATATTGTGCACTGA
GATGAGTTCATCCTGGTAGAGTTACTCAGTTTTAAAAACCAGGGCCcgcc
acttttttgcaaagcaaatcaaaacttttttttctcttcaccTAATTGTT
GTTGGCCCCCTCATTTTAAAAATCGTGACACGAGCCTTGGTTTTTTTGGC
GGAGAGTGTTGACTtccaaaaaaggaattttaaaGCAAAAGGAACAGCTA
AGTATTCAGTTTCtgaatttccaataaaatcttGTCGTGTGTGAGTTCGT
AACGTTTAGACGATTTACTTTTGTTGTATAACCCCAGATCTGAGGCTATT
AGAGACAATAATCGAGTGTTGTCATGCATCGTGATATGAGGCGCCCTATG
TTGCAAAACCATAATAGTCTCGCAGTCAGAATAAGAATGAATCACTATCA
AGAAACGTCGTTTTCGCAcctttaaaacttcaaaattcgctatcctaaat
ttgtatttttcgctatcaaaaaaggttgaaattttgctatcaaaaaaaat
aatttttcgttaTCGGGAAAGTTGAAATTTCgctatcaaaaaaattaatt
tttcgctatcaaaataattgatttttcgctatcaaaaaaaaaagattttt
cgctatcgaaatacacgttttttttataagaacgtcaaaaaatttcgaag
ccttcggatgttcttagttttttggatttgaaacctaaaaatgttcttaa
aatgttcttattttcagcattttttgagcattttgatgtaatttcttaag
aaaatgcatgttcttaagtctccaaagctatagaatgttcttagaatgtt
cttaaatttttgggccacgaagccttatgttcttatatagtttgttctta
taaaaaaaaacgtgtagttgaaATTTCGCTAGTGAGACGACTGATTTTTC
CCTAATAAAAACTTTGGCGATTGATTTTTCGTATTCAATTATACGCAGCT
TTCAAATCCAACTAAAAATACCTCGCCAATGCGGATTTTACAAAACAAAC
CCAATATTTTCTGTACGCTCTACTCCTTGAAGACCGTGTAACTTATACta
ttaaattcaaaaactttactTGAGGTACGAACCGTCTTTACAAAATGCAT
TATCTAATTCACGATTATAATTTAAGTGCTTCGATTGCTATCAGTTGCAT
GCATGGGTTCAAATACACATTCTTTTTTATGagcaaccgagttgctaagt
gagcaaccgagttgctaaggGCTCTGAAATTGGACAATTCTTTTTTGCTA
TCTCCTGAAGTAAAGTCTTTTTAAAAAGTCTAATAATTGCAAACGATAGC
CTTTAACCCAATTAGCAAAAGCATGTTTTAAGCAATtaacaaaaactttc
aatacatagttttggaaaaataaactttcgcgaatgagcctAAGATTTTT
TATGGACACACTATACAACAAATAAAATCATTTAAGAATCTTTATACCTT
CAATCGTGTAACAATAAAAAtaagagtacacgtttttttttataagaaca
aactatataagaacataaggcttcgaggcccaaaaatttaagaacattct
aagaacattctaaggctttggagacttaaaaacatgcaatttcttaagaa
attacatcataatgctcaaaaaatgctgaaaataagaacattttaagaaa
ttttttaggcttcaaatccaaaaaactaagaacatccgaaggcttcgaaa
atttttgacgttcttataaaaaaaaaaacgtgtaacaatAAACTAgaaag
tagctgtcgctatgaatgccccgcgaACGCATTGTCTTGGCTCGTTCCTT
TGAAACCATTGTGAGCACaatatcgaaaatatttttacataagaaaaaaa
caccaaagtTAAAAGTTGATATCTCCGTTTACTTCGTAGGAACAAATTAC
CGAAACGTATATGGCTGTCTATCAAGAATTATTGATctgattcttataaa
ctagatgcttataagaacaataaacaTGTTCATATTGTGCattgtccctt
gtttactttgtaagagctaattaccgaaagatgtATGGCtgtttatcaaa
agttattgatttgattcttataaactagatgcttataagaacaataaaca
tgctcatattgtgcactgtcccttgtttactttgtcagagctaattaccg
aaagatatatggCTGTTTATCAAGAgtaattgatttgattcttacaaagt
CATTTTTTGGATAGCGAAGTTTCAACCTTTTCGATagcgaaaaataaatt
tttttgacagcgaaaaatagttttttttgataGCCAAAAATCAATCTTTC
CGATAGcgaaaaagaaatcattttgaTGGCGAAAAATCTATCTTTTCGAT
AGCGGAAAAGACAAAACTTAGGATAGcgaatttcaaagtttttaaggTGC
GAAAAATACGTTTTTCGATAGCGATTTACTCTTATTCTGATTGCGAGACT
ATCATAGTTTTGCAACATAGGGCGCGTCATATCATGCAAGTCTTCATGTT
TATAAAATGTCAATTCTTACTTAATGTCcttaaaggaattatacggtgtt
atatacacccgactcgtctgaaactgacgacagcaaaattttaacaaaag
agtcctttcaaatttgtaaataaaaagaagaaaaaatcttgctccacatt
tttctttattcattacgattctatttatttcaatctgctgaatcaacata
cattataactgTGTAAAAGGTCAACGGCTTTATTACATGTATATTTGTTG
AAAACAATTAACGTGAGAATTTAGCTACATCAAGAAATagggtttggtac
aggctagtcCTGCTAAATCTGACAGATTATTAAAGTTTCACGTACGGCCC
TTTTAGAAATGACTTGCGACTATACAGTATTACGTTTTTAAATTTCAGGG
ACAACATGAGTAAGCTGCTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025819-exon-sc0000549-1491911889:51426..51520 | TCONS_00025819-exon-sc0000549-1491911889:51426..51520 | Clytia hemisphaerica | exon |
| TCONS_00025819-exon-sc0000549-1510915933:51426..51520 | TCONS_00025819-exon-sc0000549-1510915933:51426..51520 | Clytia hemisphaerica | exon |
| TCONS_00025819-exon-sc0000549-1575043694:51426..51520 | TCONS_00025819-exon-sc0000549-1575043694:51426..51520 | Clytia hemisphaerica | exon |
| TCONS_00025819-exon-sc0000549-1491911889:54574..54597 | TCONS_00025819-exon-sc0000549-1491911889:54574..54597 | Clytia hemisphaerica | exon |
| TCONS_00025819-exon-sc0000549-1510915933:54574..54597 | TCONS_00025819-exon-sc0000549-1510915933:54574..54597 | Clytia hemisphaerica | exon |
| TCONS_00025819-exon-sc0000549-1575043694:54574..54597 | TCONS_00025819-exon-sc0000549-1575043694:54574..54597 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000549 | supercontig | sc0000549:51426..54597 + |
Blast
The following BLAST results are available for this feature:
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