TCONS_00025795 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025795
Unique NameTCONS_00025795
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025795 ID=TCONS_00025795|Name=TCONS_00025795|organism=Clytia hemisphaerica|type=transcript|length=3487bp
ACCACGTGACCGTGCATTCACAATGCAGCGTGAAAATGAAAAGCACAAAA
TAACATTAGAAGAATTTTTCGATACCTCACACAGTGACGTGAAAAGCATT
TTCGATCCTTCGCAAGAGGAGGCCGTCAAAACATGTCTTCAAAACCGAAT
TGGAATCATCCAGGGACCACCGGGTTGTGGGAAAACATTTATCGGAGTAC
AAATGGTGCGTTTGCTACTGTCACTCTCTTCTCTGCACAAACCAAAGATC
TTTGTGTTGACTTACAAGAACCATGCGCTGGATGAATTTCTCAAAGGAAT
CTCTAAATATGTTGGTCTAAGTAAACTGGTTCGCATTGGAGGAAGATGTA
AAGACCCTGCATTGGAGAACATTACTCTCAGAAAACTTCGTAAAGAAAAT
CAAACCGAAATTACTGAAATGGTATTCAAAAATCGCTACGAAATGGATGA
AAGCCGAGACACACTGCGAGctacttttgaagaaattcgACAACTACCAT
ACATCAGTTATGATCAACTATATAGAAGCCTATCTGATGCACATGTGTAT
TCACTATTAATTGGTTTGGATTGGGATTCCTTGTCGAGTGAAGAGACTAA
CTGTGTAACATGGCAAGAAGTTGACAATTTGTTGAGAGgagaaaactcaa
aaagttttgaagataTCAAGTTTTTATATGAAATCAAAGATATAGCTTTT
AATCATTGGCTTCCATCTCAAGAGGAATTCGATGATTGCGAATATGAACT
TACCGGTGGCATTCAAAGCATTCAGACTTTCTCGAAATTGACGTTCAAGC
AGCCAAGTGAGATTGACAAAgtgaaaaaaggagaaaaagaagaagaaaat
ggtgAAACTATGAAAAGTGAAGAAGAGATCATGGAAGCTGAGGAGGAACA
AATGATGTTCAGTGAACAGCGAAGGTCAGAATTCGTAAATGAAGAGTTCA
ACAGTATTCTAAAGGTCGATGATGGAAATAGTAATCACCAAGGAGAACAA
CGAGTCAAAGGATTTTGTCCACAGGCCATCAAAAAGCTCACTGAAAACGG
ATATAATCTGCCTTACTTCGATGAGCAAGAGGACGTGTGGCAGTTGTCAA
TGCCAGATCGAATTCGATTGGTTCAACTTCTCATTGCCAAGGGAACAAAC
GAAATGTTGGAGAAATTTCAACGAAGTTTACGAGAATTCAAAGACGAATG
CAAACAGAAAGCAGAGCTGGAAACACAAAATGAGGTCgagattttaaaaa
gaaaacaaattattGCTGCTACAGTAACTGGTGCCTCGATCAACCAAGAA
CTTTTAAGAGAAATTAAACCGCAAATCGTCATTGTAGAAGAGGCAGCCGA
GGTACTGGAACCACAACTAGTGGCTTCGATTGGCTCGTGGACGAAATACA
TGCTTCTTATCGGTGATCACCAACAACTACGTCCATCCGTTGACGCCTAC
CATTTACGTAAAGATTACAACTTTGATATCTCCATGATGGAAAGGTTGAT
TAACAACCAAATGCCCTACACCACACTTCAAATGCAGAACCGGCAACGTG
TTGAATTCGCCGAACTCCTTCTAGACATTTATCCTAACTTGAAGACCAAC
CATAAACGAATCTCTGGACACAAACCAGCAACATGTTtggaaaaatcggt
tttcttttGGGATCATCAACATGAAGAAACAAAAGAGCGAAGCGTGAGAA
ATGAAGAAGAGGCGAAGAGAGCTGTCGATTTAGGTCTTTTCTTGGTTCAA
CAGGGCTATGAACCACGGAAAATCACAATTCTAGCTATGTATCGTGGCCA
GACAAAGTTGATCAGAGACATGATAAGAGAACATGTGAAAATATATTCTC
AACTTTTTTCATGTGACACCAGAATGAACAAGCTACAAACAGCAATGACA
ACTCATGCAGATAACAGAAAATCGACTACTATTCTAGAATCCAAGCAAAA
GCAGAAAGCGAAAGAGAAACCAGACGAGCCAAATGTCATTAAAATCCATA
CAGTAGATATGTATCAAGGTGACGAGAATGATTTTGTGATTGTATCCCTA
GTCCGATCAAATCGGGAAAGAAATATCGGTTTCTTATCGGAACGCAATCG
AAGATGTGTTGCTCAATCGCGCGCAAGATGTGGCGTTTATTTCATCGGTA
ACTCAAGCATGTTCAAAGAACATAAGACCTGGAGACCGCTCATTTCCAAA
CTGGAAAGCGATGGTTGCCTAGGCGACAAGATTGGTTTGGTTTGCAAGGA
TCATCCAGAAGCCTCTTTCAAAGTTAAAGACAGTAAATTAATGGCATTAC
CGAAGTTGAAGAACTTTTGTCAACAACCTTGCGGTCGGGAAATGGACTGt
ggaaaacatttttgtaaagAAGGATGTCAAGTTCCACACACTCACTCAAA
GTCAGCATGTAAAGAATTAGTTTTGTTTGAAGATGAACGTTGTCAACTGC
ATCATGAACCTTATCAGAGACCGTGTTGTTCACTCcgcaatttttgtaaa
aaattggtacCATTCACTTTTGAAAAGTGTGGTCATGATGCTTTTAAAGA
GTGCTACAAAAAAGCTGCATGGTTGGAATGTGAAACCCCCGTTCTTCATG
CTATGGTGTGTGGACATGTACAGTCGAAGCAATGCCATGAAGACGGATCG
AAAATAAAATGTAAGGAAAAATGTCAACGTAAAATGTCGTGCGGTCATAT
CTGTTCTGGTGGTCACAAATGTTTCGAACATTCGAATAAAAAGTCATGCC
GAGATTGCACGAATATTGAGCGAGCGGAACGCAAGAAACGCCGAAAAGCC
GAAGAGGAGCAAAGAAAGGCAAACGAGCGAAACGTGAAAGAACATATCAA
GAAGCTTGAAAATTCGGAAGATTTTGAGAAGATGTGGTGTACCGAACTTA
CCAGAGAGAATCCAGAGACCATCGAAAAATATCTCAGAATTCAAGATGCA
GTAAAGAAAGCGATCAACCAAGGACACCGTTTGTTTCCAAAGATTACGAA
GATAGAAGAGGTGCGCAATTTGAAAGTACATGCTAAATTTCTTGAGAAGT
CTCTTCATCTGtatgaaaatgaaatcaaatcCGAATCAAAATTATTCTTT
CATGGTGTAAACGATACCATGCTTGAAAGTATACTGAAGGATGGTTTTAC
ATTACCAGATGAAAGCCGGAGTTACGGTGCTGGTATTTATTTGACAATCG
ATTCTACACAGTCGCGAAATGAATCGCAAAGTGACCAATCAGGAAAGATG
CTTTACTGTCAAGTTCATCTTGGCAGATCTTGGACTGCTAAAGAAGAATC
GCCTGATTTCAATGCCGAGAGCTTACGAAAACTGAAGAAAGATTCCGTGT
TCGCCCCGCGATCCACCAAAGAAGAGGGCGGTGAATCTCTCTCAGATCAG
TACATTGTTTTTAATCCAGACCAAGTACTTCCAAGCTACGTCATCAGTTA
TGATTTGGAATTCCAGCCCTCTTTTATAGAAGTCTTT
Run BLAST on NCBI

transcript from alignment at sc0000547:181067..190437+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025795 ID=TCONS_00025795|Name=TCONS_00025795|organism=Clytia hemisphaerica|type=transcript|length=9371bp|location=Sequence derived from alignment at sc0000547:181067..190437+ (Clytia hemisphaerica)
ACCACGTGACCGTGCATTCACAATGCAGCGTGAAAATGAAAAGCACAAAA
TAACATTAGAAGAATTTTTCGATACCTCACACAGTGACGTGAAAAGCATT
TTCGATCCTTCGCAAGAGGAGGCCGTCAAAACATGTCTTCAAAACCGAAT
TGGAATCATCCAGGGACCACCGGGTTGTGGGAAAACATTTATCGGAGTAC
AAATGGTGCGTTTGCTACTGTCACTCTCTTCTCTGCACAAACCAAAGATC
TTTGTGTTGACTTACAAGAACCATGCGCTGGATGAATTTCTCAAAGGAAT
CTCTAAGTAAGTATCGTAGATGTGTAGGTAGACAACAGTAAATCGAAAGT
CCCGAAGGATCATTCTCTCTATAAAATCTAGCTGTTCACAAGAGTATTGG
ACATGATTTGatgatttctcattttttaaactttcttggTTCTCCAAGAC
ATatagtttgaaaaataatgttttctccAGTCAGAATTACAAACCTACGT
AAGACTGGCCGAATTCTTTTCTTCTTAGAAAGACAATCTTCTCTGGGTCC
CTCTGACTTTTATCCTGGCTACATTACCATCAAAGTCgggatttttattt
ataagttgtTTGATAAACGGGATGcttctctttttttctataGTCTGAAT
GCCACACAAAGATAGGAACTTGCCATAAtcgatattttttattcttcttt
tgtttgtGAACTTCTCAGGATTGCTCGTTCTACGTTATTTTTCGAGGACT
TGAAAGTTAAAGCCAAAGTTTTTATACAAAGAATGGGATAGTTCTCTTTT
GGTAAATATGAAATATCACTCTGATAAACTATTGTTTCTTTATGTCTTTT
AGATATGTTGGTCTAAGTAAACTGGTTCGCATTGGAGGAAGATGTAAAGA
CCCTGCATTGGAGAACATTACTCTCAGAAAACTTCGTAAAGAAAATCAAA
CCGAAATTACTGAAATGGTATTCAAAAATCGCTACGAAATGGATGAAAGC
CGAGACACACTGCGAGctacttttgaagaaattcgACAACTACCATACAT
CAGTTATGATCAACTATATAGAAGCCTATCTGATGCACATGTGTATTCAC
TATTAATTGGTTTGGATTGGGATTCCTTGTCGAGTGAAGAGACTAACTGT
GTAACATGGCAAGAAGTTGACAATTTGTTGAGAGgagaaaactcaaaaag
ttttgaagataTCAAGTTTTTATATGAAATCAAAGATATAGCTTTTAATC
ATTGGCTTCCATCTCAAGAGGAATTCGATGATTGCGAATATGAACTTACC
GGTAAGTCAAAATTTCATTGTTATCGGAGAGTTTGGTGCGTTTCCCAATA
TATCACAACTCTGAAGAATCTCTCACAGACAGGCAGGGATTTCGGTTACT
GTTACCGTTCGATTTATATCACGTGAAGCCTCGGATGATTTTTATCCTGG
AAGTGTTAAATGAGGCTATGATAAATCCCAAGGGGTCGCGATTCCAGTCC
CTTGAAAACTCAATATTACCCGTTTCATTTTCATAGGTGGCATTCAAAGT
ATTCAGACTTTCTCGAAATTGACGTTCAAGCAGCCAAGTGAGATTGacaa
agtaaagaaaaagaaaaaaggagaaaaagaagaagaaaatggtgAAACAA
TGAAAAGTGAAGAAGAGATCATGGAAGCAGAAGAAGAACAAATGATGTTC
AGTGAACAGCGAAGGTtactttatatttctttttttgagcATTCTGTGAA
CGAATCTTCTTCAACCCGAAACCCAGTAGCATAGACAGGGGTGAATGAAC
ATCTGCTTAGGAGAACAGATTTAAACGACACATTATATTTTTATACCACG
AATAGGTAAGTACTTTGtcgtaaaaatctgctctcctacgcagatcgatc
ttcacccctgtctacgctactgaaaAACTCCATATCACAAACCCGGTAGG
ACCCCCTACCTCCCTGTAACGAAATCAGTAAAGAAACCTCGTCTCCAGTG
AGAAAAATTGTCAACCGCCTCAGTTTCAAGGAAAAACTCGTCAAGCTGGA
GAAAGGACGACTGCCTGATTTTCTGCACCCGTCACATACCATCGACTCCC
GTCTTGTTTACCGGATTCCGGACACGTCAGAACCACGTAAAGCAAAAGCA
ACCAGTAACTCTACTATAAACCATGATTCACCCGAATCCAATAAACCAAT
TGTAGCCGTAAATTCGCTATATCCTGAAATTTCACCCAAACTAGAAATAA
ACTGAATTCTCATCCTCATTGTCATTTGTCCCCTTTATTTCACCCCATTG
GTTAAGAAAGTCTCACCAGACCACTGAGACGGGGgtgtatctttttttaa
atccgaGAGAGGACCTAAGTTGGAAACAAGCAAAAACCTTCCTTCATCCT
TTGCATTATAACCAGTTTCTAGATTACCGTTTCAAAATATCAAGGAATGT
GTGTTTCCTTGAATGCTTGAAACAAGACCAAATAGTTGCTGAGTTTTCCC
CGCCAAAAAAATCGACTTCTAGTTTCCTANTGAGTTTGGTGCGTTTCCCA
ATATATCACAGCTCTGAAGAATCTCTCACAGACAGGCAGGGGTTTCAATT
CCAGTCCCTTGAAAACTCAATATTATTCGTTTCATTTTTTTAGGTGGCAT
TCAAAGCATTCAGACTTTCTCGAAATTGACGTTCAAGCAGCCAAGTGAGA
TTGACAAAgtgaaaaaaggagaaaaagaagaagaaaatggtgAAACTATG
AAAAGTGAAGAAGAGATCATGGAAGCTGAGGAGGAACAAATGATGTTCAG
TGAACAGCGAAGGTTACTTCATATTTCTTTATTTGTGCATTCTGTGAACG
AATCTTCTTCAACCCAAAACCCAGTAGCATAGACTGGGGTGAATGAACAT
TTGCTTAGGAGAACAAATTTAAACGACACaataattaaatttttacaCCA
CGAATAGGTAAGTACTTTGTCGTAAAAATCTGTTCTCCGACGCAAATCGT
TCTTCACCTCTGTCTATGCTACTGAAAAGCTCCGTATCACAAACCCGGTA
AACCTCCCTGTAGCGAAATCAGTAAAGAAACCTCGTCTCCAGTGAGAAAA
TTTGTCCCCTTTATTTCACCCCATTGGTTGAAAAAGTCTCACCAGACCGC
TGAGACGGgggtttatctttttttaaatctgagaGAGAGGACCTTAGTCG
GAAACAACCAAAAACCTTCCTTCAGCCTTTGCATTATAACCAGTTTCTAG
ATTAATACTTCCAAATGTCTGTCAAGGAATGTGTTCTTCCTTCTTGAAAC
AAGACCAAATAATTGCTGAATTTTCCTCGACTTCTAGTTTGCTATTCCCT
CTTCTGACTTTATTAAAATAGTCTTTTGATGGATGTCTTCCCCGAAACTG
ATTATGGGTTAATGTGAACGCCAAACTTAATTGATAAATGTCTCACTCTA
CTGTGCTCCTCTCCAACCAGGTGCacgaatttggaaattaaatgtttctt
aaGCAATAGTTAAATCGTAGTTTAATTTTGAGTCGTCTAAATCACTCATT
CCGCCTGTGGTTACGACCGGGGCGTCCCGCCTTACGAGTAGCGATACTTC
TATTTGGTTCCGCGCAGTATTGACTATACTCTGAAAGCACAAACAAGGTG
TAAGATGGTGGTGTTCAAGTCTCAAAATCTTTACCTCTCTCCCTCCCTAG
AGATTTTGGTTGCCGGCAACCCTATTTCTAATTTATGTTAGTTTATCACT
AGCTGGGAAGtacatttttcccaaaaatgatTATGGTTTAGCCAAATATG
TGAACGTCAAACTTAATTGAAAAATGTATCATTCTACTATACTCCCCTCC
AACCAGATGAACGAATTCGGAAATTAAATAGCATTTTAATTATCTTGGTT
ATAGGTCAGAATTCGTAAATGAAGAGTTCAACAGTATTCTAAAGGTCGAT
GATGGAAATAGTAATCACCAAGGAGAACAACGAGTCAAAGGATTTTGTCC
ACAGGCCATCAAAAAGCTCACTGAAAATGGATATAATCTGCCTTACTTCG
ATGAGCAAGAGGACGTGTGGCAGTTGTCTATGCCAGATCGAATTCGATTG
GTTCAACTTCTCATTGCCAAGGAAACAAACGAAATGTTGGAGAAATTTCA
ACGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCTATTCCCTCTTCTGACTTTATTAAAATA
GTCTTTTGATGGATGTCTTCCCCGAAACTGATTATGGGTTAATGTGAACG
CCAAACTTAATTGATAAATGTCTCACTCTACTGTGCTCCTCTCCAACCAG
GTGCacgaatttggaaattaaatgtttcttaaGCAATAGTTAAATCGTAG
TTTAATTTTGAGTCGTCTAAATCACTCATTCCGCCTGTGGTTACGACCGG
GGCGTCCCGCCTTACGAGTAGCGATACTTCTATTTGGTTCCGCGCAGTAT
TGACTATACTCTGAAAGCACAAACAAGGTGTAAGATGGTGGTGTTCAAGT
CTCAAAATCTTTACCTCTCTCCCTCCCTAGAGATTTTGGTTGCCGGCAAC
CCTATTTCTAATTTATGTTAGTTTATCACTAGCTGGGAAGtacatttttc
ccaaaaatgatTATGGTTTAGCCAAATATGTGAACGTCAAACTTAATTGA
AAAATGTATCATTCTACTATACTCCCCTCCAACCAGATGAACGAATTCGG
AAATTAAATAGCATTTTAATTATCTTGGTTATAGGTCAGAATTCGTAAAT
GAAGAGTTCAACAGTATTCTAAAGGTCGATGATGGAAATAGTAATCACCA
AGGAGAACAACGAGTCAAAGGATTTTGTCCACAGGCCATCAAAAAGCTCA
CTGAAAACGGATATAATCTGCCTTACTTCGATGAGCAAGAGGACGTGTGG
CAGTTGTCAATGCCAGATCGAATTCGATTGGTTCAACTTCTCATTGCCAA
GGGAACAAACGAAATGTTGGAGAAATTTCAACGAAGTTTACGAGAATTCA
AAGACGAATGCAAACAGAAAGCAGAGCTGGAAACACAAAATGAGGTCgag
attttaaaaagaaaacaaattattGCTGCTACAGTAACTGGTGCCTCGAT
CAACCAAGAACTTTTAAGAGAAATTAAACCGCAAATCGTCATTGTAGAAG
AGGCAGCCGAGGTAGGATTGCTTGACGAATGAAGTAGAACTTTGCCTTTA
ATTCAACGGAAATCTTAGTTATTTAATCTCTGTCGTTTGCTTCAGGGAAA
TGTAATTGGCTATTagaatttactttttttcaagtgACTCAAAGTTAAGG
AGGTCTGTTATACAAAATAACTATATGCCTATTCTTTCTCTTCCCAAATA
ACTTCTTGAACTCCCCTCATTTTCCTTGCAGGTACTGGAACCACAACTAG
TGGCTTCGATTGGCTCGTGGACGAAATACATGCTTCTTATCGGTGATCAC
CAACAACTACGTCCATCCGTTGACGCCTACCATTTACGTAAAGATTACAA
CTTTGATATCTCCATGATGGAAAGGTTGATTAACAACCAAATGCCCTACA
CCACACTTCAAATGCAGAACCGGCAACGTGTTGAATTCGCCGAACTCCTT
CTAGACATTTATCCTAACTTGAAGACCAACCATAAACGAATCTCTGGACA
CAAACCAGCAACATGTTtggaaaaatcggttttcttttGGGATCATCAAC
ATGAAGAAACAAAAGAGCGAAGCGTGAGAAATGAAGAAGAGGCGAAGAGA
GCTGTCGATTTAGGTCTTTTCTTGGTTCAACAGGGCTATGAACCACGGAA
AATCACAATTCTAGCTATGTATCGTGGCCAGACAAAGTTGATCAGAGACA
TGATAAGAGAACATGTGAAAATATATTCTCAACTTTTTTCATGTGACACC
AGAATGAACAAGCTACAAACAGCAATGACAACTCATGCAGATAACAGAAA
ATCGACTACTATTCTAGAATCCAAGCAAAAGCAGAAAGCGAAAGAGAAAC
CAGACGAGCCAAATGTCATTAAAATCCATACAGTAGATATGTATCAAGGT
GACGAGAATGATTTTGTGATTGTATCCCTAGTCCGATCAAATCGGGAAAG
AAATATCGGTTTCTTATCGGAACGCAATCGAAGATGTGTTGCTCAATCGC
GCGCAAGATGTGGCGTTTATTTCATCGGTAACTCAAGCATGTTCAAAGAA
CATAAGACCTGGAGACCGCTCATTTCCAAACTGGAAAGCGATGGTTGCCT
AGGCGACAAGATTGGTTTGGTTTGCAAGGATCATCCAGAAGCCTCTTTCA
AAGTTAAAGACAGTAAATTAATGGCATTACCGAAGTTGAAGAACTTTTGT
CAACAACCTTGCGGTCGGGAAATGGACTGtggaaaacatttttgtaaagA
AGGATGTCAAGTTCCACACACTCACTCAAAGTCAGCATGTAAAGAATTAG
TTTTGTTTGAAGATGAACGTTGTCAACTGCATCATGAACCTTATCAGAGA
CCGTGTTGTTCACTCcgcaatttttgtaaaaaattggtacCATTCACTTT
TGAAAAGTGTGGTCATGATGCTTTTAAAGAGTGCTACAAAAAAGCTGCAT
GGTTGGAATGTGAAACCCCCGTTCTTCATGCTATGGTGTGTGGACATGTA
CAGTCGAAGCAATGCCATGAAGACGGATCGAAAATAAAATGTAAGGAAAA
ATGTCAACGTAAAATGTCGTGCGGTCATATCTGTTCTGGTGGTCACAAAT
GTTTCGAACATTCGAATAAAAAGTCATGCCGAGATTGCACGAATATTGAG
CGAGCGGAACGCAAGAAACGCCGAAAAGCCGAAGAGGAGCAAAGAAAGGC
AAACGAGCGAAACGTAAGCTTTTCATTCACGCTTTGTCTGATCGTTTGTT
GTGATTGATTCGCtcttaataaaaaaaatgactttgatCTGGACTAAAAC
GCTCATTTTCCTCACATTCCCCTCTCTTTTCATGGTTCTAATATGAGTAT
TCCTAATCGTTCTATTTttgtttgttgttctttttctttcgtGACTTCTT
TGGGTGTATTCACACTGTTGCTTAAAAGCTGCTTGGAAATATGGGAACAA
AGAAttgcacgatcttctcctttgtcttttattATCTAAGCTTGCACGAT
CGTGTAATCGTGTTTGAAGTGAACTTCAAGCCAAAAAACATGATTTTGTG
TTGATAGTAAAACTAGGGGGGCACACGACCATACGTTCAGCCCAAAAAAT
AAGCTACGAAATTTGACACCCTAACAGTGTTTAAANAATCGTGTTTGAAG
TGAACTTCAAGCCAAAAAACATGATTTTGTGTTGATAGTAAAACTAGGGG
GGCACACGACCATACGTTCAGCCCAAAAAATAAGCTACGAAATTTGACAC
CCTAACAGTGTTTAAACACGTTTAGGTCATtagcttgaaactttcagtGT
GAATACACCCCAGGTCCCCCCTTCCTCAAAATTTATTACCCCTTTATCGA
CTGTTATCACCAAGAAACTtagataaaagttttttaaagtttctaACCCC
GTTCCTAACCCCGTCTACGTATTTCCAATTCTAAGATCTCAAGTTCAGAT
AAATGTGTTATCTGAATCTATTTTGAATAAGTTTCTGTCTATGCTATGTT
TGCTTTTGTTCTCACAGGTGAAAGAACATATCAAGAAGCTTGAAAATTCG
GAAGATTTTGAGAAGATGTGGTGTACCGAACTTACCAGAGAGAATCCAGA
GACCATCGAAAAATATCTCAGAATTCAAGATGCAGTAAAGAAAGCGATCA
ACCAAGGACACCGTTTGTTTCCAAAGATTACGAAGATAGAAGAGGTGCGC
AATTTGAAAGTACATGCTAAATTTCTTGAGAAGTCTCTTCATCTGtatga
aaatgaaatcaaatcCGAATCAAAATTATTCTTTCATGGTGTAAACGATA
CCATGCTTGAAAGTATACTGAAGGATGGTTTTACATTACCAGATGAAAGC
CGGAGTTACGGTGCTGGTATTTATTTGACAATCGATTCTACACAGTCGCG
AAATGAATCGCAAAGTGACCAATCAGGAAAGATGCTTTACTGTCAAGTTC
ATCTTGGCAGATCTTGGACTGCTAAAGAAGAATCGCCTGATTTCAATGCC
GAGAGCTTACGAAAACTGAAGAAAGATTCCGTGTTCGCCCCGCGATCCAC
CAAAGAAGAGGGCGGTGAATCTCTCTCAGATCAGTACATTGTTTTTAATC
CAGACCAAGTACTTCCAAGCTACGTCATCAGTTATGATTTGGAATTCCAG
CCCTCTTTTATAGAAGTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014490XLOC_014490Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025795-exon-sc0000547-1491911889:181067..181372TCONS_00025795-exon-sc0000547-1491911889:181067..181372Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1510915933:181067..181372TCONS_00025795-exon-sc0000547-1510915933:181067..181372Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1575043694:181067..181372TCONS_00025795-exon-sc0000547-1575043694:181067..181372Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1491911889:181919..182367TCONS_00025795-exon-sc0000547-1491911889:181919..182367Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1510915933:181919..182367TCONS_00025795-exon-sc0000547-1510915933:181919..182367Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1575043694:181919..182367TCONS_00025795-exon-sc0000547-1575043694:181919..182367Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1491911889:183710..183878TCONS_00025795-exon-sc0000547-1491911889:183710..183878Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1510915933:183710..183878TCONS_00025795-exon-sc0000547-1510915933:183710..183878Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1575043694:183710..183878TCONS_00025795-exon-sc0000547-1575043694:183710..183878Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1491911889:186851..187277TCONS_00025795-exon-sc0000547-1491911889:186851..187277Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1510915933:186851..187277TCONS_00025795-exon-sc0000547-1510915933:186851..187277Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1575043694:186851..187277TCONS_00025795-exon-sc0000547-1575043694:186851..187277Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1491911889:187498..188979TCONS_00025795-exon-sc0000547-1491911889:187498..188979Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1510915933:187498..188979TCONS_00025795-exon-sc0000547-1510915933:187498..188979Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1575043694:187498..188979TCONS_00025795-exon-sc0000547-1575043694:187498..188979Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1491911889:189784..190437TCONS_00025795-exon-sc0000547-1491911889:189784..190437Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1510915933:189784..190437TCONS_00025795-exon-sc0000547-1510915933:189784..190437Clytia hemisphaericaexon
TCONS_00025795-exon-sc0000547-1575043694:189784..190437TCONS_00025795-exon-sc0000547-1575043694:189784..190437Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000547supercontigsc0000547:181067..190437 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.178755	0.0445933	0.0081563	0.140419	0.0860054	0	0.223783	0	0.0059746	0.223856	0	0.367768	0.24328	0.387703	0.641446	0.532232	0.388874	0.15609	1.32375	0.16494	0.13036	0.220814	0.20036	0.137042	0.148072	0.139953	0.412779	0.23787	0.235673
Blast
[Close]
BLAST of TCONS_00025795 vs. Swiss-Prot (Human)
Match: ZNFX1 (NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1 PE=2 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 1.090e-70
Identity = 190/605 (31.40%), Postives = 287/605 (47.44%), Query Frame = 2 
Query: 1070 DEQEDVWQLSMPDRIRLVQLLIAKGTNEMLEKFQRSLREFKDECKQKAELETQNEVEILKRKQIIAATVTGASINQELLREIKPQXXXXXXXXXXLEPQLVASIGSWTKYMLLIGDHQQLRPSVDAYHLRKDYNFDISMMERLINNQMPYTTLQMQNRQRVEFAELLLD-IYPNLKTNHKRISGHKPATCLEKSVFFWDH---QHEETKERSVRNEEEAKRAVDLGLFLVQQGYEPRKITILAMYRGQTKLIRDMIREHVKIYSQLFSCDTRMNKLQTAMTTHADNRKSTTILESKQKQKAKEKPDEPNVIKIHTVDMYQGDENDFVIVSLVRSNRERNIGFLSERNRRCVAQSRARCGVYFIGNSSMFKEHKTWRPLISKLESDGCLGDKIGLVCKDHPEASFKV-KDSKLMALPKLKNFCQQPCGREMDCGKHFCKEGCQVPHTHSK------SACKELVLFEDERCQLHHEPYQRPCCSLRNFCKKLVPFTFEKCGHDAFKECYKKAAWLECETPVLHAMVCGHVQSKQCHED--------------------------------GSKIKCKEKCQRKMSCGHICSGG-HKCFEHSNKKSCR 2752
            +E EDVWQL +  R +L +L +     +   K     R+++   ++ AEL  Q ++ ILK  Q++  T TGA+  +++L++++P+IVIVEEAAEVLE   +A++    ++++LIGDHQQLRPS + Y L K++N ++S+ ERL+   +P+  L  Q+R   E A LL   IY +L+ NH  +  ++    +  ++FF +H   + E  + +S +N+ EA   V+L  + + Q Y P +ITIL  Y GQ   +R                     KL  A T                             +++H VD YQG+END +++SLVRSN+E  +GFL   NR CVA SRA+ G+Y IGN  M  +   W  +I  L  +  +G  + L C++HPE    V K S    +P  +  C  PC   + CG H C   C  P+  S         C++++  E  RC L        C      C+  VP T  +CGH+    C    +   C+ P   ++ CGH  S  C ED                                G  +KC  KC   + CGH C G  H CFE    + C+
Sbjct:  917 NEIEDVWQLDLSSRWQLYRLWLQLYQADTRRKILSYERQYRTSAERMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQDLE-NHPSVLKYEKIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLR---------------------KLMPAKTFAG--------------------------VRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLRENNQIGPMLRLCCQNHPETHTLVSKASDFQKVP--EGGCSLPCEFRLGCG-HVCTRACH-PYDSSHKEFQCMKPCQKVICQEGHRCPL-------VCFQECQPCQVKVPKTIPRCGHEQMVPCSVPESDFCCQEPCSKSLRCGHRCSHPCGEDCVQLCSEMVTIKLKCGHSQPVKCGHVEGLLYGGLLVKCTTKCGTILDCGHPCPGSCHSCFEGRFHERCQ 1462
The following BLAST results are available for this feature:
BLAST of TCONS_00025795 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZNFX11.090e-7031.40NFX1-type zinc finger-containing protein 1 OS=Homo... [more]
back to top