TCONS_00025808 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025808
Unique NameTCONS_00025808
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025808 ID=TCONS_00025808|Name=TCONS_00025808|organism=Clytia hemisphaerica|type=transcript|length=583bp
TTGAGAATAAACTCAACTCCAATTTAATATAAAAGTTGTGTTTGCATCAT
TCCAGTCCAAAAATATCAGTcagtcatgaaattttgcacactgatgcaaa
atggcaatacctaaataTGCGATGGAgcctgaattttgaaaaaaaaattt
ccagtcaaaaatgccggaaaaaccagttttttggcattttctcgagatct
cATCATTAGTGTAGATGTaaattagcaatgcctaaaatataACTGAGCCT
AAAAATGTGACTCCTCAAGCAATTTTAAGTACCTGGAAAGCAGATCAGTA
AGTACCTGGAAAGCCGATCAGCCCAAAGACCGTACTTTCCTTTGCTGGTC
CATGAGCAGCTTTTTGCCTGCTTAGGCCATTCGGGCAATAGTAGGTCAAC
CAGGTAGTTTTGGAGAACGCAACAGCCTATAAAAGGTCTATAAAAGTATA
TAATACAGCTTGTTTCATTGTGTAAGGAGACAGAAGTTCTGGATCTTTAC
TTGAGTGTCATATGTAGTGTTCTAGCCTTTTGATGTTTTacataccaaaa
tttaagtttggtTGACCTTGAAACAATTCTCAT
Run BLAST on NCBI

transcript from alignment at sc0000547:21816..22398

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025808 ID=TCONS_00025808|Name=TCONS_00025808|organism=Clytia hemisphaerica|type=transcript|length=583bp|location=Sequence derived from alignment at sc0000547:21816..22398 (Clytia hemisphaerica)
ATGAGAATTGTTTCAAGGTCAaccaaacttaaattttggtatgtAAAACA
TCAAAAGGCTAGAACACTACATATGACACTCAAGTAAAGATCCAGAACTT
CTGTCTCCTTACACAATGAAACAAGCTGTATTATATACTTTTATAGACCT
TTTATAGGCTGTTGCGTTCTCCAAAACTACCTGGTTGACCTACTATTGCC
CGAATGGCCTAAGCAGGCAAAAAGCTGCTCATGGACCAGCAAAGGAAAGT
ACGGTCTTTGGGCTGATCGGCTTTCCAGGTACTTACTGATCTGCTTTCCA
GGTACTTAAAATTGCTTGAGGAGTCACATTTTTAGGCTCAGTtatatttt
aggcattgctaatttACATCTACACTAATGATgagatctcgagaaaatgc
caaaaaactggtttttccggcatttttgactggaaatttttttttcaaaa
ttcaggcTCCATCGCAtatttaggtattgccattttgcatcagtgtgcaa
aatttcatgactgACTGATATTTTTGGACTGGAATGATGCAAACACAACT
TTTATATTAAATTGGAGTTGAGTTTATTCTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014500XLOC_014500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025808-exon-sc0000547-1491911889:21816..22398TCONS_00025808-exon-sc0000547-1491911889:21816..22398Clytia hemisphaericaexon
TCONS_00025808-exon-sc0000547-1510915933:21816..22398TCONS_00025808-exon-sc0000547-1510915933:21816..22398Clytia hemisphaericaexon
TCONS_00025808-exon-sc0000547-1575043694:21816..22398TCONS_00025808-exon-sc0000547-1575043694:21816..22398Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000547supercontigsc0000547:21816..22398 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.284581	0.647526	0.537028	0.210159	0.383773	0.101088	0.731747	0.799228	0.639495	0.19803	1.37719	0.379058	0.454436	0.393109	0.228784	0.365606	0.284845	0.364946	0.100839	0.633122	0.642014	0.402624	0.326295	0	0.101847	0.454481	0.520289	0.694083	0.210575	0.453936
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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