TCONS_00025752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025752
Unique NameTCONS_00025752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025752 ID=TCONS_00025752|Name=TCONS_00025752|organism=Clytia hemisphaerica|type=transcript|length=453bp
TTATAGAAGAAAATACAAtgtagaaagaaacaaaaaacaaactttcaTCC
CATAAGATGTCAGTATCCACACTGGAGAACAGGTTCCTTGCAATGGAAga
tgattttgataaaatcattgcATCAAGTAAAGCTACACTACAAAAAGATA
AAGAAGCATTGCAAAAGAGTCCACGGAATGCAAAATCGATTttaaaagat
aacagGAATGCCGCTAGTAATGAACCTGCCAAAGgtttttcaTTAAACCT
TGGTGGGTACGAAAaacaaacaccaaaacaaaagcAACTCCGTGACGAGC
GGCAAAGAgaatataggaaatatttatctGAGCAAACGTCAAAAAGTGGT
AGATCAAACACCCATGTCAATAATGACATTCGAAATGAAGAGGCACAGcC
GATTTCACGCAAAGAAGAGTATCGAAGACACATTGATCAAGAGTATAAAG
att
Run BLAST on NCBI

transcript from alignment at sc0000545:149433..151395+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025752 ID=TCONS_00025752|Name=TCONS_00025752|organism=Clytia hemisphaerica|type=transcript|length=1963bp|location=Sequence derived from alignment at sc0000545:149433..151395+ (Clytia hemisphaerica)
TTATAGAAGAAAATACAAtgtagaaagaaacaaaaaacaaactttcaTCC
CATAAGATGTCAGTATCCACACTGGAGAACAGGTTCCTTGCAATGGAAga
tgattttgataaaatcattgcATCAAGTAAAGCTACACTACAAAAAGATA
AAGAAGCATTGCAAAAGAGTCCACGGGTTTGTCATTTCATGTCAACTTcg
cttaaattttttttcagtataTTATTCAAAGTTATGTCACTACACCTTTC
TTTGACCCATCAGTTTAAGGTATACCTTGAAAATCATGGTAATACATTCT
TTTTTCCAACCAACATAATTTCCCCTCTACATAATTGAATAGCTCAAATA
TTGTGATATTTCATAGCACCTCTTTATTTCTTTATTCGTTCTTCCAGAAT
GCAAAATCGATTttaaaagataacaggtatgtGTAGTGGataatttcttt
ttagtttcaatttcatttttatgttgTATCACTTGAGGAGGAGGGATATT
ATTTACTATTTGACTGAGATTGATCTATTCTTCTAAAAGATGTCATTTGG
TATTTCTATCTCTTTCTATTTAGGAATGCCGCTAGTAATGAACCTGCCAA
AGGTAAATCAATAACTAAATTTCATCAATAATTTCTATGTCTATATTTTT
GTTTGAGAGACTGCAATACCGAATAATACCGAataataattaaataataa
tttATCGCTCAATAACCCAAAGCTTACTCTATTGTTGTAACTTTTTAATT
CTTTGGTCAAATAGCTCANGAGACTGTAATACTGTataataattaaataa
taaccCAAAGCTTACTCTATTGTAACTTTTTAAATCTTTGGTCGAATAGC
TCAGACttaatatttttaatttattttcatatttttaggtttttcaTTAA
ACCTTGGTGGGTACGAAAaacaaacaccaaaacaaaagcAACTCCGTGAC
GAGCGGCAAAGAgaatataggaaatatttatctGAGGTATTTGATTGTGA
CAAAATTTCAACCCATAGTTTCTTAATGATTACAACGAAAACGACCAACC
AATCAGCGCTAATTcttgaaattataaaatttaaacCTTGGTTTTCCAGG
ATTACCTTATTCTTTTTAGCTGAATTCCAACTTCAAGGCCATGTTGTAAC
GTACTATTTTTTTCGACGATTCTACCACATGATTGTCTCATTGTCATCCT
CCAAGATTTGTAAATTTGTATCTTATCTTTAAAGTGACCAATAACTTAGC
TTTTCATTTGATATTCCATCATAGCATTGATTATGAATAGTAGTAACAAA
CTTTCTTCATCATTTATTTGTAGCAAACGTCAAAAAGTGGTAGATCAAAC
ACCCATGTCAATAATGACATTCGAAATGAAGAGGCACAGGTAATTAGTTA
TTTAAAGTTGTGTTATTATTATACTGCACAGAATGATCTTAGTCTTATCT
CCTTCGCTCCGGTTTTAAAACTCCTCTCTTTCGATGAAGGCCAAAGAGCC
TGGCGAAGTTTTCTATTATGGAATAGAAAGATATCCAAAATATAATCATA
ACCGTTGTTAAGAGTCTTAAATGTTGAATGGAACAGAACAGAATATTTTC
TAGTAAGGTAGAAGatgtgtttgtttttttcagatatcataaaaatgatt
ttgctattttttcagcCGATTTCACGCAAAGAAGGTAAAAAGTCATACAT
ATCATCATATCCCGTAACACAATTAAATTGTCAGTGAATCATATCACACA
TGTGGGAACTTGACTGTTCTTTTTACTGTGAAATCATTTCATAAGATttt
gaattattgaaaattgtaTACGATTCATAATTCTAATTCAGcctaaattt
tacattttttcgaATTGATAGAATGCTCTATTAAACAAAATTAatgattc
atttttcatttcattgtatttttgtagAGTATCGAAGACACATTGATCAA
GAGTATAAAGatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014464XLOC_014464Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025752-exon-sc0000545-1491911889:149433..149608TCONS_00025752-exon-sc0000545-1491911889:149433..149608Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1510915933:149433..149608TCONS_00025752-exon-sc0000545-1510915933:149433..149608Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1575043694:149433..149608TCONS_00025752-exon-sc0000545-1575043694:149433..149608Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1491911889:149830..149858TCONS_00025752-exon-sc0000545-1491911889:149830..149858Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1510915933:149830..149858TCONS_00025752-exon-sc0000545-1510915933:149830..149858Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1575043694:149830..149858TCONS_00025752-exon-sc0000545-1575043694:149830..149858Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1491911889:150006..150034TCONS_00025752-exon-sc0000545-1491911889:150006..150034Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1510915933:150006..150034TCONS_00025752-exon-sc0000545-1510915933:150006..150034Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1575043694:150006..150034TCONS_00025752-exon-sc0000545-1575043694:150006..150034Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1491911889:150321..150418TCONS_00025752-exon-sc0000545-1491911889:150321..150418Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1510915933:150321..150418TCONS_00025752-exon-sc0000545-1510915933:150321..150418Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1575043694:150321..150418TCONS_00025752-exon-sc0000545-1575043694:150321..150418Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1491911889:150756..150821TCONS_00025752-exon-sc0000545-1491911889:150756..150821Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1510915933:150756..150821TCONS_00025752-exon-sc0000545-1510915933:150756..150821Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1575043694:150756..150821TCONS_00025752-exon-sc0000545-1575043694:150756..150821Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1491911889:151098..151116TCONS_00025752-exon-sc0000545-1491911889:151098..151116Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1510915933:151098..151116TCONS_00025752-exon-sc0000545-1510915933:151098..151116Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1575043694:151098..151116TCONS_00025752-exon-sc0000545-1575043694:151098..151116Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1491911889:151360..151395TCONS_00025752-exon-sc0000545-1491911889:151360..151395Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1510915933:151360..151395TCONS_00025752-exon-sc0000545-1510915933:151360..151395Clytia hemisphaericaexon
TCONS_00025752-exon-sc0000545-1575043694:151360..151395TCONS_00025752-exon-sc0000545-1575043694:151360..151395Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000545supercontigsc0000545:149433..151395 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.72235	8.9003	2.72168	1.39156	18.4728	11.2633	10.3494	10.793	7.23623	6.83014	8.03237	5.49784	2.65911	1.70081	2.88799	2.9247	2.35511	5.61522	1.34945	2.92629	2.24074	4.28664	3.52471	4.22646	6.16252	10.6385	2.82359	1.20383	2.23284	5.30332
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top