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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025769 ID=TCONS_00025769|Name=TCONS_00025769|organism=Clytia hemisphaerica|type=transcript|length=1601bp
aacaaaTGTCTTCCTAAATCGTAAAATGTGTAATGTGTTCATTTTCCCGT
gttttattgttgttgttgttcctCGTCAGGGGTGTGGTATTCCCGGAAAC
AAGGGTAAACACACAAGCCAGGATGAACAATACAAGTGTCGCATTGGTAC
CGTGATTCTCGACGAATACCCAATTTGTAACATTGGACACACCGTTTAGT
CGGGATTCTTCGTTGGTTAGGATTAGTGGCGGGAACGGGTTCAGGGTCGT
GTGCTCCAGTGGTTGGGTGTGAGTATAATGCCTTATAAGCGTCAAtcttc
gcgaaagtttcttcgaTGAACATCAACTTGAAGTCTGTATAAGTCAAGAC
TCTATCAGCAGCTGTTTGAAGGTGAAAGACGTGAGCGTTGAACATCACTT
CCTCCAATAGGTGGAAAGCACACTTGGTCGTCCATTTGAAGGCTTTCCTT
ACCATGCTGTGCTGACTAGTGACTGCATCATTTTTATCAACAAATCCCAT
CTTGTGGTTATAGTCGACCACGAGCTGCTCTTTCATGATGTTATCGCCGT
TTCGAGCTTTCTTGGGGACCGTTACCAATTTGGGACGATGCATAGTGGAG
ATGAAAAACACCTCTTTAGAATCTTGGAAGCGAAGTGCCAACAGCTTGTC
GTTAACAAAGTGGCGAGTTTCCCCTTTCTCCAGCTTCCCCGCGGTGAACT
CCTTAGGAAAACCGCCTCTGTTCTTTCGAAGGGTACCGCAAGCCGGAGTT
TGGTGCTTTTGAAGATACTGGAAGAGCGGGACACCCGTGTACCAATTATC
GGTAAAAAGTCTGTGACCTTTGTCTAGAAGGGGGTTCATCAGGCGGACCA
CCACTTGCCCACTAATTCCAAGCTTTTTAAGTTCTTCTTGGGCTGGTACG
ACTTGAGCGTGGCCAGACTCGTCAcataaagaaaagaattttataCCGAA
TCTTGCTCTCTTATTAGGGATATACTGCTTGAAATGTAAGTTCCCCTTAT
GGAGTAACAATTGCTCATCAATACTAACATCACGGGAAGGGTAATACAAC
TCTTGGAACTTGGTGTTCAGGTAATTCAAAAGGGGTCGGATTTTGAAAAG
GCGGTCCCTTTTCGGGTCTTTTGGGACGTAGTTGGTGTTGTCGTTAAAAT
GAATGAATCTTGAGATGAGTTGGTAACGATTACGCGACATTACGGAATTA
TAAACAGGGTTATGATAAAAGGGGTGAGTGCTCCAATAATCCGGAATTTG
CGGGAGGGAATGGATTCCCATTAGCATCGATAGGGCAAAGTAGTTCTTAA
GCTCATTTTCGGTCACATCTTTCCAGTCATTTACCCTCGATTGGTTTGAA
ATATCGGCACTTTCAATAAATTGATTGGCATATAAGTTAGTTTGTACAAC
AATATATGACATCAATTCATCCGTTAGAAATAAACTAACAATGTCACTCA
CGCTTTCTGGTACCTCAACAGTTGGTCCAACGTTTTGATTAAAGATTGGA
ATTTCTGGTTGAAACGGTCCATCATTCCACTCTTTCCAAGGATTTACTTT
CTTGCCACCACGCATACGCACACCTTCACCTCTACCACGTCCACGTCCAC
G Run BLAST on NCBI protein sequence of TCONS_00025769-protein >TCONS_00025769-protein ID=TCONS_00025769-protein|Name=TCONS_00025769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp
RGRGRGRGEGVRMRGGKKVNPWKEWNDGPFQPEIPIFNQNVGPTVEVPES
VSDIVSLFLTDELMSYIVVQTNLYANQFIESADISNQSRVNDWKDVTENE
LKNYFALSMLMGIHSLPQIPDYWSTHPFYHNPVYNSVMSRNRYQLISRFI
HFNDNTNYVPKDPKRDRLFKIRPLLNYLNTKFQELYYPSRDVSIDEQLLL
HKGNLHFKQYIPNKRARFGIKFFSLCDESGHAQVVPAQEELKKLGISGQV
VVRLMNPLLDKGHRLFTDNWYTGVPLFQYLQKHQTPACGTLRKNRGGFPK
EFTAGKLEKGETRHFVNDKLLALRFQDSKEVFFISTMHRPKLVTVPKKAR
NGDNIMKEQLVVDYNHKMGFVDKNDAVTSQHSMVRKAFKWTTKCAFHLLE
EVMFNAHVFHLQTAADRVLTYTDFKLMFIEETFAKIDAYKALYSHPTTGA
HDPEPVPATNPNQRRIPTKRCVQCYKLGIRRESRYQCDTCIVHPGLCVYP
CFREYHTPDEEQQQQ Run BLAST on NCBI transcript from alignment at sc0000545:68457..70057 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025769 ID=TCONS_00025769|Name=TCONS_00025769|organism=Clytia hemisphaerica|type=transcript|length=1601bp|location=Sequence derived from alignment at sc0000545:68457..70057 (Clytia hemisphaerica)
CGTGGACGTGGACGTGGTAGAGGTGAAGGTGTGCGTATGCGTGGTGGCAA
GAAAGTAAATCCTTGGAAAGAGTGGAATGATGGACCGTTTCAACCAGAAA
TTCCAATCTTTAATCAAAACGTTGGACCAACTGTTGAGGTACCAGAAAGC
GTGAGTGACATTGTTAGTTTATTTCTAACGGATGAATTGATGTCATATAT
TGTTGTACAAACTAACTTATATGCCAATCAATTTATTGAAAGTGCCGATA
TTTCAAACCAATCGAGGGTAAATGACTGGAAAGATGTGACCGAAAATGAG
CTTAAGAACTACTTTGCCCTATCGATGCTAATGGGAATCCATTCCCTCCC
GCAAATTCCGGATTATTGGAGCACTCACCCCTTTTATCATAACCCTGTTT
ATAATTCCGTAATGTCGCGTAATCGTTACCAACTCATCTCAAGATTCATT
CATTTTAACGACAACACCAACTACGTCCCAAAAGACCCGAAAAGGGACCG
CCTTTTCAAAATCCGACCCCTTTTGAATTACCTGAACACCAAGTTCCAAG
AGTTGTATTACCCTTCCCGTGATGTTAGTATTGATGAGCAATTGTTACTC
CATAAGGGGAACTTACATTTCAAGCAGTATATCCCTAATAAGAGAGCAAG
ATTCGGtataaaattcttttctttatgTGACGAGTCTGGCCACGCTCAAG
TCGTACCAGCCCAAGAAGAACTTAAAAAGCTTGGAATTAGTGGGCAAGTG
GTGGTCCGCCTGATGAACCCCCTTCTAGACAAAGGTCACAGACTTTTTAC
CGATAATTGGTACACGGGTGTCCCGCTCTTCCAGTATCTTCAAAAGCACC
AAACTCCGGCTTGCGGTACCCTTCGAAAGAACAGAGGCGGTTTTCCTAAG
GAGTTCACCGCGGGGAAGCTGGAGAAAGGGGAAACTCGCCACTTTGTTAA
CGACAAGCTGTTGGCACTTCGCTTCCAAGATTCTAAAGAGGTGTTTTTCA
TCTCCACTATGCATCGTCCCAAATTGGTAACGGTCCCCAAGAAAGCTCGA
AACGGCGATAACATCATGAAAGAGCAGCTCGTGGTCGACTATAACCACAA
GATGGGATTTGTTGATAAAAATGATGCAGTCACTAGTCAGCACAGCATGG
TAAGGAAAGCCTTCAAATGGACGACCAAGTGTGCTTTCCACCTATTGGAG
GAAGTGATGTTCAACGCTCACGTCTTTCACCTTCAAACAGCTGCTGATAG
AGTCTTGACTTATACAGACTTCAAGTTGATGTTCAtcgaagaaactttcg
cgaagaTTGACGCTTATAAGGCATTATACTCACACCCAACCACTGGAGCA
CACGACCCTGAACCCGTTCCCGCCACTAATCCTAACCAACGAAGAATCCC
GACTAAACGGTGTGTCCAATGTTACAAATTGGGTATTCGTCGAGAATCAC
GGTACCAATGCGACACTTGTATTGTTCATCCTGGCTTGTGTGTTTACCCT
TGTTTCCGGGAATACCACACCCCTGACGaggaacaacaacaacaataaaa
cACGGGAAAATGAACACATTACACATTTTACGATTTAGGAAGACAtttgt
t Coding sequence (CDS) from alignment at sc0000545:68457..70057 >TCONS_00025769 ID=TCONS_00025769|Name=TCONS_00025769|organism=Clytia hemisphaerica|type=CDS|length=1548bp|location=Sequence derived from alignment at sc0000545:68457..70057 (Clytia hemisphaerica)
CGTGGACGTGGACGTGGTAGAGGTGAAGGTGTGCGTATGCGTGGTGGCAA
GAAAGTAAATCCTTGGAAAGAGTGGAATGATGGACCGTTTCAACCAGAAA
TTCCAATCTTTAATCAAAACGTTGGACCAACTGTTGAGGTACCAGAAAGC
GTGAGTGACATTGTTAGTTTATTTCTAACGGATGAATTGATGTCATATAT
TGTTGTACAAACTAACTTATATGCCAATCAATTTATTGAAAGTGCCGATA
TTTCAAACCAATCGAGGGTAAATGACTGGAAAGATGTGACCGAAAATGAG
CTTAAGAACTACTTTGCCCTATCGATGCTAATGGGAATCCATTCCCTCCC
GCAAATTCCGGATTATTGGAGCACTCACCCCTTTTATCATAACCCTGTTT
ATAATTCCGTAATGTCGCGTAATCGTTACCAACTCATCTCAAGATTCATT
CATTTTAACGACAACACCAACTACGTCCCAAAAGACCCGAAAAGGGACCG
CCTTTTCAAAATCCGACCCCTTTTGAATTACCTGAACACCAAGTTCCAAG
AGTTGTATTACCCTTCCCGTGATGTTAGTATTGATGAGCAATTGTTACTC
CATAAGGGGAACTTACATTTCAAGCAGTATATCCCTAATAAGAGAGCAAG
ATTCGGtataaaattcttttctttatgTGACGAGTCTGGCCACGCTCAAG
TCGTACCAGCCCAAGAAGAACTTAAAAAGCTTGGAATTAGTGGGCAAGTG
GTGGTCCGCCTGATGAACCCCCTTCTAGACAAAGGTCACAGACTTTTTAC
CGATAATTGGTACACGGGTGTCCCGCTCTTCCAGTATCTTCAAAAGCACC
AAACTCCGGCTTGCGGTACCCTTCGAAAGAACAGAGGCGGTTTTCCTAAG
GAGTTCACCGCGGGGAAGCTGGAGAAAGGGGAAACTCGCCACTTTGTTAA
CGACAAGCTGTTGGCACTTCGCTTCCAAGATTCTAAAGAGGTGTTTTTCA
TCTCCACTATGCATCGTCCCAAATTGGTAACGGTCCCCAAGAAAGCTCGA
AACGGCGATAACATCATGAAAGAGCAGCTCGTGGTCGACTATAACCACAA
GATGGGATTTGTTGATAAAAATGATGCAGTCACTAGTCAGCACAGCATGG
TAAGGAAAGCCTTCAAATGGACGACCAAGTGTGCTTTCCACCTATTGGAG
GAAGTGATGTTCAACGCTCACGTCTTTCACCTTCAAACAGCTGCTGATAG
AGTCTTGACTTATACAGACTTCAAGTTGATGTTCAtcgaagaaactttcg
cgaagaTTGACGCTTATAAGGCATTATACTCACACCCAACCACTGGAGCA
CACGACCCTGAACCCGTTCCCGCCACTAATCCTAACCAACGAAGAATCCC
GACTAAACGGTGTGTCCAATGTTACAAATTGGGTATTCGTCGAGAATCAC
GGTACCAATGCGACACTTGTATTGTTCATCCTGGCTTGTGTGTTTACCCT
TGTTTCCGGGAATACCACACCCCTGACGaggaacaacaacaacaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025769-exon-sc0000545-1491911889:68457..70057 | TCONS_00025769-exon-sc0000545-1491911889:68457..70057 | Clytia hemisphaerica | exon |
| TCONS_00025769-exon-sc0000545-1510915933:68457..70057 | TCONS_00025769-exon-sc0000545-1510915933:68457..70057 | Clytia hemisphaerica | exon |
| TCONS_00025769-exon-sc0000545-1575043694:68457..70057 | TCONS_00025769-exon-sc0000545-1575043694:68457..70057 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000545 | supercontig | sc0000545:68457..70057 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029526 | PGBD |
Blast
BLAST of TCONS_00025769 vs. Swiss-Prot (Human)
Match: PGBD4 (PiggyBac transposable element-derived protein 4 OS=Homo sapiens GN=PGBD4 PE=2 SV=3) HSP 1 Score: 250.751 bits (639), Expect = 8.486e-75 Identity = 168/495 (33.94%), Postives = 255/495 (51.52%), Query Frame = -1
Query: 81 VSDIV------SLFLTDELMSYIVVQTNLYANQFIESA-DISNQSRVNDWKDVTENELKNYFALSMLMGIHSLPQIPDYWSTHPFYHNPVYNSVMSRNRYQLISRFIHFNDNTNYVPKDPKRD-RLFKIRPLLNYLNTKFQELYYPSRDVSIDEQLLLHKGNLHFKQYIPNKRARFGIKFFSLCD-ESGHA-----------QVVPAQEELKKLGISGQVVVRLMNPLLDKGHRLFTDNWYTGVPLFQYLQKHQTPACGTLRKNRGGFPKEFTAGKLEKGETRHFVNDKLLALRFQDSKEVFFISTMHRPKLVTVPKKARNGDNIMKEQLVVDYNHKMGFVDKNDAVTSQHSMVRKAFK-WTTKCAFHLLEEVMFNAHVFHLQTAADRVLTYTDFKLMFIEETFAK--IDAYKALYSHPT---------TGAHDPEPVPATNPNQRRIPTKRCVQCY----KLG--IRRESRYQCDTCIVHPGLCVYPCFREYHT 1451
VSDI LF T+EL+S I +TN A SR++ WKD +ELK +FA+ +L GI P++ +WST P P +M+ R+ L+ R +HF +N++ K L KI+P+ ++L KF +Y P+R++++DE L+L KG L KQY+P KR RFG+K + LC+ +SG+ + + + LK S ++V+ L+N LL +G+ +F DN+ LF+ L +++T A GT R NR P + ++ KG T +L+AL++ D KEV +ST H ++ V RNG + +++VDYN MG VD D + + + RK K W K HLL + N+++ + + +++ +F+L IE K + L P +G H P+ +PAT+ Q PT RC C K G IR+E+RY C C V LCV PCF YHT
Sbjct: 98 VSDITDPLQYFELFFTEELVSKITRETNAQAALLASKPPGPKGFSRMDKWKDTDNDELKVFFAVMLLQGIVQKPELEMFWSTRPLLDTPYLRQIMTGERFLLLFRCLHFVNNSSISAGQSKAQISLQKIKPVFDFLVNKFSTVYTPNRNIAVDESLMLFKGPLAMKQYLPTKRVRFGLKLYVLCESQSGYVWNALVHTGPGMNLKDSADGLK----SSRIVLTLVNDLLGQGYCVFLDNFNISPMLFRELHQNRTDAVGTARLNRKQIPNDLKK-RIAKGTTVARFCGELMALKWCDGKEVTMLSTFHNDTVIEV--NNRNGKKTKRPRVIVDYNENMGAVDSADQMLTSYPSERKRHKVWYKKFFHHLLHITVLNSYILFKKDNPEHTMSHINFRLALIERMLEKHHKPGQQHLRGRPCSDDVTPLRLSGRHFPKSIPATSGKQN--PTGRCKICCSQYDKDGKKIRKETRYFCAECDV--PLCVVPCFEIYHT 581
The following BLAST results are available for this feature:
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