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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025455 ID=TCONS_00025455|Name=TCONS_00025455|organism=Clytia hemisphaerica|type=transcript|length=2741bp
ATTTACTAAAGTTTGATTTCTCgagaatttttttgaacattGGAATATTT
GGTTTGTGGTGGTGTATAGTCATCCGTGATTTGGATTGTTTTCTTGTGAC
CACAATAAGATGAGCCCGTTCACCATTGTCTTATTTTCGTTCACTTTGGC
GCTTCATCTGTTCATACTTGAAGCGACGCATTACTCAATAATCGCATTGC
TCGGCCGCCCGACATCATGGGAGGCCGACTATCATTTAGAAGTGGATTAC
GATACATGTTGTCAGGAAATGTGTAGAGCCAACGAGTCGTGTAAATCGTA
CGATCAAATATGGCAGCCGAGTCGTGATATCTACGAATGCCGTTTTtaca
gtaaaaattatcaagtCTTAAAAGCGGAAGGGGAGAAATTGGAGCTGATC
CCGAGAGTGCAATATTACTCTAAGATGTATCAAGTCACAAGCTGCGAGGG
CTGGTGGGAGGCCGGTGCAAGATCGACTGGTGATTACAAAATTTCCAGTG
ATGGGACAACACAATTTTGTTTCGAGTTGACGTCCTGTGATGATGTTGTG
AAGCAAGGTCTGTTGTCACCCAAAACGACATCTGAAGACTTTGGAACGTC
TCTTGGTGAAAGTGATTTTCAAATTCGACTACACGAAGCTGGAGGTCAAA
TATTGAATGTACGTTGCGCCAACATTCTAGGAAAAGCATGGACAATTTTT
CAGAAACGAATGAACCCTCAACAGTACCCTTTCAATAAGAAGACATGGGC
TCAATTTAAAACGGGTAAGGGAACGAATGAACGATTTTGTTGGGAAGTCT
GTTACGAGTAAAATTTATAAAGAACATTTCatacatttttaaactttttg
attgCAATTTTCCTAATCATTTTAATCGTGAACTTTAACGcaaaattttt
agaatgttCAAATATGATTGAAGTTTGCATCTGACgtcaaaagtgttttt
ccttTCATGGAAGGATGGACTAGGTCGTGTGGTTTCTTCCTTATTTTATT
GAACTAGTCTGATATGGTCGTCGGAACGTCTGTTATATGAATCTAATATG
ATGATACAATTATCAACCCATGGCGTCGCGGCGAGGTTTCGAGGAGAATA
GCGGcaatgaatttacaaggaaaattcttttgatgacaGTATCggaaaca
taaaaacaaagtttgaaaCTTTTAAGTCCCAAATAAGTTGAAGACTCCCT
AAGTTTATAAACTTGAATGCCGTGTAAATTCGATTTATTGACGTTCGAAC
TGCAGTTGACGCTCTACGATCCGTTACACTccattatttgataatattga
aagtgaCCGTCAACGACGTTccactattcgataggctcccttattcgatg
aaaatccaatcccccttgaaaatcgaattagagagcgtcaactgtataac
ATTATAGTAAGAAAGCAGCATTTTTATTGCGTTTAGGATTTTCTGACAGT
GTTGGAGATTTCTATCTCGGTAACCGATGGATGAACAACATGTTGGGTGG
AGGGAAAGTCAACAGGCTGATGGTTTTGGTTCGTAAAGGAACAGAATGGT
CGGgTGAGAAGTATGAAAAATTCAAGACGAAAGGTGACAAATACAACTAC
GAAGCCGTGATCAGTGACCCTGCAAAACCGCAAGATTCCATTGCAGGGTG
GCTTAGTCTCCACTTAAACGAGCAAAGAGAATTTATTACTATTGATCGTG
ATCCTGCAGATGTCGAATGTTCAAAGTTGGGGTTCAATGGTGAAGGGTAC
GCTGGATGGAGAGGGAAACACCCTGATGCGTGTCTTGGTGAATATTGGTT
GTTTCCAAACGCGCGTGTTCCTCAAAGATTCTTACCGAACAGGGTTCTTG
AGAAGTTTGATGCCAGTATTATGATGTTCCATCATGCAGAGGACTGATTT
TAATTTCACTTTAACTTTGGTACAGTCTTGAAGTTGCTCaggaaaaattt
caaagattggatttcatatttttctcgTTCAACTTCtctgcagtcttgaa
gtagctcaagaaatattttgagatctagatttcttttttttttcgttcaa
cttttgtgcagtcttgaagtagctcaaaaAGATTCCTTAATTCACGGAAC
CTTTACAATTTATCTGGTAATTCCGATGGTggttggcggccgcccacgct
taAGCTCTAAAAGAGCGGTCCAATTTCCTATTGGAGAGAGATGATAGTTG
GCCTTTCAAGTGCCGCATCCCCCGTCGGGTTCAACTACCTTTGCGCGCAA
ACCTAAAGTATTCCGGTTGAACCTACCAAATGCTAAAAGCGAGGACTGGG
TTACCAGggctcccgctgcaaaatccttgacgcggtcttgcGAAATTCGG
TAATCTAAACCTACCAGATGTTTAAAATGCCCAtgagagctttagcgtgt
cggatgaaaatttcttcatttggGTGCCAGAGAACTTTTTCATGTTTGTT
TGAACGCACGAGTACATCAAAGTAATTTCCGAGTAGATTCTGATACTTTG
CGCATGACACGTATTTATGCTCTAAAGGTCATTGCTCCGTAAGAGGTTGG
GGCATCGCTTTTATCTTTTTCATCCATAtttgggatgaatattaaatgag
atTTGAAGTGCGGTGATTTGCAAAATTGAAACAATCGCACCAAAATAAAG
TGCCTATTAAAAACATAATAATAAGAACGCggtcactttcactttcattt
taaagcaaaaCGCAACGcgtttttgattgaatttgttGAAC Run BLAST on NCBI transcript from alignment at sc0000536:23142..27161+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025455 ID=TCONS_00025455|Name=TCONS_00025455|organism=Clytia hemisphaerica|type=transcript|length=4020bp|location=Sequence derived from alignment at sc0000536:23142..27161+ (Clytia hemisphaerica)
ATTTACTAAAGTTTGATTTCTCgagaatttttttgaacattGGAATATTT
GGTTTGTGGTGGTGTATAGTCATCCGTGATTTGGATTGTTTTCTTGTGAC
CACAATAAGATGAGCCCGTTCACCATTGTCTTATTTTCGTTCACTTTGGC
GCTTCATCTGTTCATACTTGAAGCGACGCATTACTCAATAATCGCATTGC
TCGGCCGCCCGACATCATGGGAGGCCGACTATCATTTAGAAGTGGATTAC
GATACATGTTGTCAGGAAATGTGTAGAGCCAACGAGTCGTGTAAATCGTA
CGATCAAATATGGCAGCCGAGTCGTGATATCTACGAATGCCGTTTTtaca
gtaaaaattatcaagtCTTAAAAGCGGAAGGGGAGAAATTGGAGCTGATC
CCGAGAGTGCAATATTACTCTAAGATGTATCAAGTCACAAGCTGCGAGGG
CTGGTGGGAGGCCGGTGCAAGATCGACTGGTGATTACAAAATTTCCAGTG
ATGGGACAACACAATTTTGTTTCGAGTTGACGTCCTGTGATGATGTTGTG
AAGCAAGGTCTGTTGTCACCCAAAACGACATCTGAAGACTTTGGAACGTC
TCTTGGTGAAAGTGATTTTCAAATTCGACTACACGAAGCTGGAGGTTAGT
TGCATTCTCCTTCATTCAGAATTTAGGCTAATAATGTGACTATAATAATG
GGAATATTTCCTCGAAGATTTAAATTCTTCCAAAAATGAACTACttaagg
cgtacaaactttcgggaggccgaaaaatcgcgaaatttacaaCATAAACT
CTAGcaaattcaaggaaaaaaacatttttggtgaGCGTAAACTTTTTTTG
CGGATTAAGACACCTTTTCATGATTAGAAGTTTAACCGATTTTCTATTTT
gccaagaatttttcgcgaacataaactttcgcgaatggcactaacaagaa
tttttaaagatattgactttttgcgaaaaagagcaaaacatttctttcat
tAAACCAAAcgtttcaaccttttccaaaatgtttctgttcgcgaaagtAT
GTACGTCTAGGACTTATTACTACGAAGAATATTTTTAACGAGTGTCAATA
ACAAGGGACGAGAGGAAAAAGCGTTAAATAGTCTCTTAATTTATTTCTTG
TACAAAGTCATTTTTTTCGTAGGTCAAATATTGAATGTACGTTGCGCCAA
CATTCTAGGAAAAGCATGGACAATTTTTCAGAAACGAATGAACCCTCAAC
AGTACCCTTTCAATAAGAAGACATGGGCTCAATTTAAAACGGGTAAGGGA
ACGAATGAACGATTTTGTTGGGAAGTCTGTTACGAGTAAAATTTATAAAG
AACATTTCatacatttttaaactttttgattgCAATTTTCCTAATCATTT
TAATCGTGAACTTTAACGcaaaatttttagaatgttCAAATATGATTGAA
GTTTGCATCTGACgtcaaaagtgtttttccttTCATGGAAGGATGGACTA
GGTCGTGTGGTTTCTTCCTTATTTTATTGAACTAGTCTGATATGGTCGTC
GGAACGTCTGTTATATGAATCTAATATGATGATACAATTATCAACCCATG
GCGTCGCGGCGAGGTTTCGAGGAGAATAGCGGcaatgaatttacaaggaa
aattcttttgatgacaGTATCggaaacataaaaacaaagtttgaaaCTTT
TAAGTCCCAAATAAGTTGAAGACTCCCTAAGTTTATAAACTTGAATGCCG
TGTAAATTCGATTTATTGACGTTCGAACTGCAGTTGACGCTCTACGATCC
GTTACACTccattatttgataatattgaaagtgaCCGTCAACGACGTTcc
actattcgataggctcccttattcgatgaaaatccaatcccccttgaaaa
tcgaattagagagcgtcaactgtataacATTATAGTAAGAAAGCAGCATT
TTTATTGCGTTTAGGATTTTCTGACAGTGTTGGAGATTTCTATCTCGGTA
ACCGATGGATGAACAACATGTTGGGTGGAGGGAAAGTCAACAGGCTGATG
GTTTTGGTTCGTAAAGGAACAGAATGGTCGGGTAGGAAGTTTTACGAACT
TTTCTATTATATACCAGGTGCACCacaaaaaaagttaacaaaTTTAACAT
TAGATTTTATAGATTTCTATGAGGTCGTTTATGTGCACTCTCTGAAAGGA
ACTTGTTTGTTCATCGAAGCATAACACAAATTCTATAAATGACACATCAA
AATGTCAGTTAAAAGTTGAGAAagcgaaattcaattttttaaacttttca
tgGTTAACGCTGTTGACGTTATAAACATTAAGAAATAGACTTGCCATTGt
aatttttataacaacaaaaCATCACTCATGAAAaggtttttaatttgatt
tgaagCTTGGAAAATCTAAAGACCAACCAGCagtattttcatttattttt
ggcttttcgttttctttcaacCGATGTCAATTGAATATGTTTCAAAATTA
ACCAATGCCATATCCAACTTTTAAATAAGGGTGATTGAAATTAATCTGGT
TGATTATAACAAAAACCATCCGTACGAGGAGAtatgtcattttttaatga
tttctatattttgacttttgacccccAAAAATATTGTGTAAAGGCTTGTA
TATAAAAGGGCGGATAAGGTTTATAGTAAtctctccctaattcgaacccg
ctgtaattcgaatctttctataattcgaactaaaacattggtccCCTTAG
TTGGAAAGTGGTATAAAaacgctctttaattcgaagaTCGAATTAGGGAG
TGGCAACAgtatatctttttcatttctttcaggTGAGAAGTATGAAAAAT
TCAAGACGAAAGGTGACAAATACAACTACGAAGCCGTGATCAGTGACCCT
GCAAAACCGCAAGATTCCATTGCAGGGTGGCTTAGTCTCCACTTAAACGA
GCAAAGAGAATTTATTACTATTGATCGTGATCCTGCAGATGTCGAATGTT
CAAAGTTGGGGTTCAATGGTGAAGGGTACGCTGGATGGAGAGGGAAACAC
CCTGATGCGTGTCTTGGTGAATATTGGTTGTTTCCAAACGCGCGTGTTCC
TCAAAGATTCTTACCGAACAGGGTTCTTGAGAAGTTTGATGCCAGTATTA
TGATGTTCCATCATGCAGAGGACTGATTTTAATTTCACTTTAACTTTGGT
ACAGTCTTGAAGTTGCTCaggaaaaatttcaaagattggatttcatattt
ttctcgTTCAACTTCtctgcagtcttgaagtagctcaagaaatattttga
gatctagatttcttttttttttcgttcaacttttgtgcagtcttgaagta
gctcaaaaAGATTCCTTAATTCACGGAACCTTTACAATTTATCTGGTAAT
TCCGATGGTggttggcggccgcccacgcttaAGCTCTAAAAGAGCGGTCC
AATTTCCTATTGGAGAGAGATGATAGTTGGCCTTTCAAGTGCCGCATCCC
CCGTCGGGTTCAACTACCTTTGCGCGCAAACCTAAAGTATTCCGGTTGAA
CCTACCAAATGCTAAAAGCGAGGACTGGGTTACCAGggctcccgctgcaa
aatccttgacgcggtcttgcGAAATTCGGTAATCTAAACCTACCAGATGT
TTAAAATGCCCAtgagagctttagcgtgtcggatgaaaatttcttcattt
ggGTGCCAGAGAACTTTTTCATGTTTGTTTGAACGCACGAGTACATCAAA
GTAATTTCCGAGTAGATTCTGATACTTTGCGCATGACACGTATTTATGCT
CTAAAGGTCATTGCTCCGTAAGAGGTTGGGGCATCGCTTTTATCTTTTTC
ATCCATAtttgggatgaatattaaatgagatTTGAAGTGCGGTGATTTGC
AAAATTGAAACAATCGCACCAAAATAAAGTGCCTATTAAAAACATAATAA
TAAGAACGCggtcactttcactttcattttaaagcaaaaCGCAACGcgtt
tttgattgaatttgttGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025455-exon-sc0000536-1491911889:23142..23785 | TCONS_00025455-exon-sc0000536-1491911889:23142..23785 | Clytia hemisphaerica | exon |
| TCONS_00025455-exon-sc0000536-1510915933:23142..23785 | TCONS_00025455-exon-sc0000536-1510915933:23142..23785 | Clytia hemisphaerica | exon |
| TCONS_00025455-exon-sc0000536-1575043694:23142..23785 | TCONS_00025455-exon-sc0000536-1575043694:23142..23785 | Clytia hemisphaerica | exon |
| TCONS_00025455-exon-sc0000536-1491911889:24314..25222 | TCONS_00025455-exon-sc0000536-1491911889:24314..25222 | Clytia hemisphaerica | exon |
| TCONS_00025455-exon-sc0000536-1510915933:24314..25222 | TCONS_00025455-exon-sc0000536-1510915933:24314..25222 | Clytia hemisphaerica | exon |
| TCONS_00025455-exon-sc0000536-1575043694:24314..25222 | TCONS_00025455-exon-sc0000536-1575043694:24314..25222 | Clytia hemisphaerica | exon |
| TCONS_00025455-exon-sc0000536-1491911889:25974..27161 | TCONS_00025455-exon-sc0000536-1491911889:25974..27161 | Clytia hemisphaerica | exon |
| TCONS_00025455-exon-sc0000536-1510915933:25974..27161 | TCONS_00025455-exon-sc0000536-1510915933:25974..27161 | Clytia hemisphaerica | exon |
| TCONS_00025455-exon-sc0000536-1575043694:25974..27161 | TCONS_00025455-exon-sc0000536-1575043694:25974..27161 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000536 | supercontig | sc0000536:23142..27161 + |
Blast
The following BLAST results are available for this feature:
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