TCONS_00025401 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025401
Unique NameTCONS_00025401
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025401 ID=TCONS_00025401|Name=TCONS_00025401|organism=Clytia hemisphaerica|type=transcript|length=1522bp
NNTAGATTTACGAAATAAGGACTTGGAAAAACAATTTGACCAGCAGGCAT
CAGATAAGAAAGAAATTGTTTCCTTTCTCAAAAAACAGTTGGAACAAAGA
TCAGATGAAATTGCTGATTTGCAAGAGAAAATAATTGGTGTTCAACAAGC
CAAAGATATTCAAAAGGATAAATATGAAGTTGAAATTACAACTGTTAAAA
CTGAAATGCAAGAAGTTAAAGACCAGTTAACATCTGAAAACATGGTTTTA
CAGGGAAAGCTAACTTCTTTGGAAGAATTTCGTGTCCAAAAAGAGACTTT
ATTGAATAAATTTGCAGACATGGAACAACTTTTGAGGGATAAAGAAGAAG
ATCATAAAGAGCAGATCTATCAATTGGAACGAAAAGCTGTTGTTGATAAA
GATAGGTTGAAGAAAGAAATGATTTTACGAGTAAACACAGTGGCTGCAGA
ATTTCGTAAAGTATCTAATAAACAGATGGCTGACACCACCAAACGTACCA
TCCGTGAAAATGTGATGATCAACTCACAGCTATCCAAGATGTCTGACAAA
ACAGTCGAGTTGATCACAGAGAATGATGAAGTAAAACTAAAGAATAAGAA
TCATAAACAGCATCTGGATGTCTTGGAAGGAACTGAAAAAGAATTGATAC
GTAAAAATGCAGCTAACCAGAAGCTGATACGAATGTTAACAGCCAAAGCT
AGAGAGCAAGAAGAAACATTGATGGACTTCATGGAGAAAGAGAGCTCCTA
TAAAAAGCTAGAGTCAGATCACGCTAAATTGGAAGAAGTGTTAGAGACTT
TACAAAAAGACCACGGGAGTTTCAACGAAGAATATTTGGCATTGACTGAA
CGTTACCAGGAACTGGAAAAAGAAAGAGATACTGTTTTGGATGATAAGAA
TTATTTGATTGGTATTTTATCTGATGCCACGCAAGTCTTGAAACAAGCAC
TTCAGCACGAGGATCCGACGGAAGATGCAGGACGAGTGGAGATGAAGAAT
ACGAACCTCCTCTACAAAGTCATCGAAATCCTTAAAGTTGCCGTTGAAAT
GGGTGTCGGCATACAATTGGATGATTTCCTGGCCAAACGCACTTTGATCG
CGAAGAAGAAATTGCATTGTGGTCTACCATCACAAATGACCATGCAATcG
TCACCACATGCAGCTCATTACAAGCTTGGTGATTTGGGAATTGTTCCTCC
AAGAAAAAAGAGTCCCACCAAAAAGAAAACAGACAAAACAAAGGCTGTTT
ATTGTTCAGATGAACAACTGGCTAAAGGAACACCTCGTCATTCAGCTTAC
GACTTTGTTCAAAGTAAGACGGTTAAATTACCCAAAATCCCCTCCCCTGT
CCAATAAATAAACTCTTTCCAGGAAAAGCATTTCCAAAGTTTTAAATAAT
ggtttcattttaaatttatcCATGTACATGTTTGTAAATAGTGAAGtaat
aatttttgaaacattttattttttgaaatatattaacAGATCGTGCAGTA
ATTAAAAATCAATCCCCTAAAA
Run BLAST on NCBI

protein sequence of TCONS_00025401-protein

>TCONS_00025401-protein ID=TCONS_00025401-protein|Name=TCONS_00025401-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp
XDLRNKDLEKQFDQQASDKKEIVSFLKKQLEQRSDEIADLQEKIIGVQQA
KDIQKDKYEVEITTVKTEMQEVKDQLTSENMVLQGKLTSLEEFRVQKETL
LNKFADMEQLLRDKEEDHKEQIYQLERKAVVDKDRLKKEMILRVNTVAAE
FRKVSNKQMADTTKRTIRENVMINSQLSKMSDKTVELITENDEVKLKNKN
HKQHLDVLEGTEKELIRKNAANQKLIRMLTAKAREQEETLMDFMEKESSY
KKLESDHAKLEEVLETLQKDHGSFNEEYLALTERYQELEKERDTVLDDKN
YLIGILSDATQVLKQALQHEDPTEDAGRVEMKNTNLLYKVIEILKVAVEM
GVGIQLDDFLAKRTLIAKKKLHCGLPSQMTMQSSPHAAHYKLGDLGIVPP
RKKSPTKKKTDKTKAVYCSDEQLAKGTPRHSAYDFVQSKTVKLPKIPSPV
Q
Run BLAST on NCBI

transcript from alignment at sc0000533:130001..138143-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025401 ID=TCONS_00025401|Name=TCONS_00025401|organism=Clytia hemisphaerica|type=transcript|length=8143bp|location=Sequence derived from alignment at sc0000533:130001..138143- (Clytia hemisphaerica)
NNTAGATTTACGAAATAAGGACTTGGAAAAACAATTTGACCAGCAGGCAT
CAGATAAGAAAGAAATTGTTTCCTTTCTCAAAAAACAGTTGGAACAAAGA
TCAGATGAAATTGCTGATTTGCAAGAGAAAATAATTGGTGTTCAACAAGC
CAAAGATATTCAAAAGGATAAATATGAAGTTGAAATTACAACTGTTAAAA
CTGAAATGCAAGAAGTTAAAGACCAGTTAACATCTGAAAACATGGTTTTA
CAGGGAAAGCTAACTTCTTTGGAAGAATTTCGTGTCCAAAAAGAGACTTT
ATTGAATAAATTTGCAGACATGGAACAACTTTTGAGGGATAAAGAAGAAG
ATCATAAAGAGCAGATCTATCAATTGGAACGAAAAGCTGTTGTTGATAAA
GATAGGTTAGATTTTATGTTGTTTGTTTATGTAATATGAGTAAATGTCAT
TTTCTTCTTTTATTCTGCATTAAATGGGCCCTTAAATGTGTTATAACTTT
TATTTTCCATCTTTCTCAAGAGTTCCTAAAGACTCTTATTCAGAGGACAT
ATTTCGTCACAATATTTTAGATTTTATTAATCGTTTTTCAACTACCGCAC
TCGTTTAATTTGATTTCCTTTTTTTTTTGTACTCTTCCAATAAAATCAAA
TTAGCCAAGCCATAGAACTTTATCGAATAAGGTCTTCGATATATTGAAAA
GTAAGAGACTTTAAAACTTTTGGGAGAAAAAGAAAATTGGTTCCTTTCCA
AGGTTTATGAAAATATCTGAATTTTCAGGTTGAAGAAAGAAATGATTTTA
CGAGTAAACACAGTGGCTGCAGAATTTCGTAAAGTATCTAATAAACAGAT
GGCTGACACCACCAAACGTACCATCCGTGAAAATGTGATGATCAACTCAC
AGCTATCCAAGATGTCTGACAAAACAGTCGAGTTGATCACAGAGAATGAT
GAAGTAAAACTAAAGAATAAGAATCATAAACAGCATCTGGATGTCTTGGA
AGGAACTGAAAAAGAATTGATACGTAAAAATGCAGCTAACCAGAAGGTAT
GTTTGAATGAGATATCGAAAATTAATGCAATGAATAATCAAATCTTGCTT
TTTGTTCTAAACATTAATATCGAACAATTTTGTTCTTGTTTCCCTTACTT
AATAGCAGAGGAGAAACCCTTCAGAGCCGTAGCATCTTTTGTGAGACGCA
CCGCATTTGATTGGTTCGAAAATTAGTATAATTTAAAAATATTTTTGAGA
GGGGCCCACGAGTTAGGCCTGACAAAAGTTTTAATGGTAAAAAAACAGAC
GTCGTAGGCAAAACTCCTAACCCCCAAAATGGTTTTCGAAAGCCGAATTC
CAAAAAAAATACCTACTATTTTAAAAGAGGATTCCTCAAGAAATTGGTTA
AAAACATTCCTAATTTGAAGAAAGACAAATAATTTGTTATTTTTCATGAA
AAACCAAAATACTTTACTAATCTTCACAGGAACAAAGACACATTATCGTT
TTTGTCTTTATGAATTTCAATTAACGTTCTAGTATAGACCTTTTCGCCTT
TGATGTCATTTATGTGCAAGCAGCCATTTTTTATACGAATCATAGATTGA
AAAATAGATAAACCATTTATAAACCGAAAATGATGTCATTGATATGCAAA
ACTACGCAAATCTGTTCCAGTAATCTTTGATTTGTATGAAAAATAGCTGC
TTGCATATAAATGACATCAATAGCGAAAAGGTCTATTAGTACCAGTGGTA
TAATTTTGTTTTCTTTTCTAAGCTTAACGCAGTATACGCCAAGTCATTAA
ATACCATTCAATTTTAGCTGATACGAATGTTAACAGCCAAAGCTAGAGAG
CAAGAAGAAACATTGATGGACTTCATGGAGAAAGAGAGCTCCTATAAAAA
GCTAGAGTCAGATCACGCTAAATTGGAAGAAGTGTTAGAGACTTTACAAA
AAGACCACGGGAGTTTCAACGAAGAATATTTGGCATTGACTGAACGTTAC
CAGGAACTGGAAAAAGAAAGAGATACTGTTTTGGATGATAAGAATTATTT
GATTGGTATTTTATCTGATGCCACGCAAGTCTTGAAACAAGCACTTCAGG
TACACGTGTTTTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTCG
ACGCCCAAGATGTTAAGAACAAGTTAAGAACATTTTAAGGCTTTATGGAC
TCAAAACACTCGATTTCTTAGGAAAATTGGGTAAAGATGGTCCAAAATTG
GTTAAGATCCCAAAAAGTTGAGAACATCTGAAGGCCTCAAAAATTTTGGA
TGATTTTATAAAAAAAACGTGTAGGAAGATTTCTTTAACTTTTCACTAGT
AAATGAAATGATGTTTTCATTTTAAGCATCTTCTTTTAAAATATGATTGG
TTGATGTGATGTATTCTGGTATTAAGGATTTAGCTATAATTTCTAATACA
TCCATAAAAAAAAGGAGCTTAAATGTTTTAAATTAGTAAATATTTGATGG
TTAAAACGAGATTGAAGTTATGCTCCCTCTATTTTTTAGTTTGGCTCTGC
CAAATTCGAATTCAAATCATCTTTTCTATTAAGTACTGTTGATGGACATT
CGTTTTCTCCTAATGATAGACTTTTTTTGGTCATCTACAAATCAAGGGCC
ATGATTTTAATTATCATACAGTGTGTCCCAAATAAAGCGGACTAATTTTA
CATAGTATGTATACTTAATATTTTCATCTCCAAAACCTATTCAATCATCT
TAGGAATTGAATATCTATTGATTGAACAGAGATATTTCAATTATTCTAAG
CTCTTTATTAATTTAAATAACGAGTTTCGAGGATTTTACTTTATATAAAA
ATTTGTCCACTTTTTTCGAGACACATTGTACTCAGGGCTGTAGCTGAAAA
AATTCTAGACCAAAAAATCTCATATTTAGAGCTGACGAACCACTCTCAGT
TTTAAAGGTTTATCCTGATATCTTTTCGGTGTCTCAATTAGCGATCCGTT
ATCGCAGTTAGTAAAGGGTTTCGTTGCAAATCAGACTCTAGTGTCTTGAT
TCAAATAAGGCCTTTAAATGGTGCCCATCAAGACCATGTTTGTGTTCCGA
AAAAGACTCTTAAGGGTCTGGGTTTATTACACCCATGGGTTTTGTTTGAA
ACAAGACCTCCGTAATCACAGCAAAAAGGGTCTCCTTTGTTTTTTAAGAC
CAGTTAAAGTCTGCTTCTATTCCAGACCCAAATAGGACCCTTCAAAAGGT
CTTAAAGATAACCTTCAACTTTGTGCTTCTTTATTTTCAGCACGAGGATC
CGACGGAAGATGCAGGACGAGTGGAGATGAAGAATACGAACCTCCTCTAC
AAAGTCATCGAAATCCTTAAAGTTGCCGTTGAAATGGGTGTCGGCATACA
ATTGGATGATTTCCTGGCCAAACGCACTTTGATCGCGAAGAAGAAATTGC
ATTGTGGTCTACCATCACAAATGACCATGCAATCGTATGTTTTTGTTTTC
TTTTTCTATCACAACTGCTTGAAAATATAGTAAATCACTTTCCTTGTGTA
TATCATACCCGGCTAGAGGACTGGTATTTTTAAGTTCGGAGCTGGAATAT
TCATGGCGTAATGTTTTATACGGAAGCACCCAAAAAGACTTGGTTGCCTG
TTTGCCACATATTTTGAAATCAAGCGGCAGACGCACGGGCTATTTTAGAT
GCTACCGTAAAAACATTAAGTCATAAATATCATGAATTACAGAGGCCAGT
TAGTCAGGTACTTGATAATTCTGCAGTAAACAAATTGAAAAAATATATAG
TATAGTAAGCTCCATCATATTCCATCTCTAAATAGGAAAACTTCGTNGGT
CTTAAAGATAACCTTCAACTTTGTGCTCCTTTATTTTCAGCACGAGGATC
CGACGGAAGATGCAGGACGAGTGGAGATGAAGAATACAAACCTCCTCTAC
AAAGTCATCGAAATCCTTAAAGTTGCCGTTGAAATGGGTGTCGGCATACA
ATTGGATGATTTCCTGGCCAAACGCACTTTGATCGCGAAGAAGAAATTGC
ATTGTGGTCTACCATCACAAATGACCATGCAATCGTATGTTTTTGTTTTC
TTTTTCTATCACAACTGCTTGAAAATATAGTAAATCACTTTCCTTGTGTA
TATCATACCCGGCTAGAGGACTGGTATTTTTAAGTTCGGAGCTGGAATAT
TCATGGCGTAATGTTTTATACGGAAGCACCCAAAAAGACTTGGTTGCCTG
TTTGCCACATATTTTGAAATCAAGCGGCAGACGCACGGGCTATTTTAGAT
GCTACCGTAAAAACATTAAGTCATAAATATCATGAATTACAGAGGCCAGT
TAGTCAGGTACTTGATAATTCTGCAGTAAACAAATTGAAAAAATATATAG
TATAGTAAGCTCCATCATATTCCATCTCTAAATAGGAAAACTTCGTGTGG
TGTACATAAGTTTTTCGGGGAAGGCCTTTTTTGAGTTTGGATACTCTTTT
AGTTTATTATTATAGTTTTGTCACTGACTGAGCTTCTTCTTTTCTCCCTT
TTGATTGGTCAAAACAAGTTGTTGTCTTAAACGAAATACAAATTGAAAAT
AAATGAGGAGATAACATTTTATTGGTCTTAATCTTTCAACAAATTCCATA
AAAAGTAACCTTTTAACATTATATTAGAATTGATAATTTTACACTTGATT
TGGTTTCTATACATCACCTTTCTAAAATAGATTTCCTTTCGTGAAGGTGA
AAATAATTCGAGAAACTTGACCCAATAATGACACCAAATTTTTCATAAGG
CAGAAAATTACTTCAGTATGGTGGATTGACACAATCATTATTCTTTCAAA
ATTCAACTTTCCTAAACGAGTAATATATTTTCCAAAAAAAATTTCCAAAG
ATCTCACCCATTAGTTCATTAAAAATAAGCATTTGAAATTTTTTGCCAAC
TTTTTGAACTTGGACAAGGAGCCCTGTGCGCAGAGCAGTTTTTCATATTT
GACCTTTAGGGCAAGGACAGCGGTAGTGAAACTAAGTGGTTTTGACGGTG
ACGTCATTAAAACTTGGACTTTGCATCTTTTTAAGTGTTAATGAGGTTTA
GTTTAAAAAAAGATATCAAATATGTTATCTGTTAATTGATTTCTATTTTT
ATGCAATAACTGTATCTGTTTTTGTTTGAAAGAGGTCATCAGCTTTGAAA
AATGATTTATGGACGTTTATTTTTAAAGGACTAGAGTCATTGAGTTTCAA
GCCCGAAGGGCTAGAGGCGAGACTCCTGGATGGGAAATGAAACCACTTAT
TTTTCATCCAGAACGCCCGCGCGTAATTTTTACACAAACACCGGATTGAA
ACTAAAATCTATAGCTAGATTTCAAAAAGTGTGGTCCTCCAAAACAAAGG
AACCGCTAGATACAATCCGTCGTCGTGTTTACGGTGCATTCTATGCGCAT
TTTGGATGGGAAATAAGTGGCTTCAATTTATCTTGCCTGAGAAGAATTAA
AGTTTCGTCTCTAGCCCTTCGGGCTTGAAACTCAATTGCTAGGGTTTTAG
GATGACAAACATTTTCGAATTGAATTGTAAACTTTGATTGCGTTTGAATT
TAAAACTTACTTGTTTAGAGTTGGGAAGAGACGGAAACAATAAAGTATCA
AATTGAAAGCATTGTTTAGAAAAAATGATTTCCGATTATTTTCTTTTTCG
AAAACTGTATTTTACTCCCAAAAATACTTTGTTTAGAATACCCCTGTCTC
ATAAACCCGTTGAAGCATCTCACTAGAAAATATGACCAAAAATCACCACA
TACTCATTTTTACTATACCCTAAACCTTCAACCTCAGCAGCCATTAGGAA
GTTCAATATCGTCCCAAAATAAAATGTAGAAACGGTTTTCTGTCTGAACC
ATTTTACTTTTTGATTTGAAAACGAAAGAAACATCCCCATTGAAATCTTG
TTAGAAACTTTCACCCTGGCGGATGAGGGGTATGTGCGGACGGAGAGACT
AATTTAAAACTTTCTGATTTTTCCGATCCTGAGAGACTTTGAAGAGTGAA
AAACCGACCCTTACCGTCTGCACATACCCAGCACCCATTTTTGCCTAAGT
ACCTCCCCCCCAGAACTTTGATTAAAGAATGTGGAATTTCTTGCCTTAAA
AGAGAAATGCGATAGAATGTTTAAAGGTACCAGATAAATCATACCTTTGC
GATTCTTATTATTTGTAGGTCACCACATGCAGCTCATTACAAGCTTGGTG
ATTTGGGAATTGTTCCTCCAAGAAAAAAGAGTCCCACCAAAAAGAAAACA
GACAAAACAAAGGTAATTGAAAATTTGTAATGTGCAGTAGACTTTGTTTT
TTATAAGAACATCCAAAAATTTTGAAACCTCGGGATGCTCTTAACTTTTT
GAGTTTTAAGCTTAAAAATGTTCTTAACATATTCTTATTTTCGCCATTTT
TCGAGTATTTTAGTAAGATTCTCCTAAGAAACCTAGTGTTTTAAAGTCTG
CAAAGCCTCAATATATTCTTAACTTGTTCTTACTATTATGGCCATCGAAG
CCTTATGTTCTTATACAGGTTGTTCTTATAAAAAAACGCGAAGGGTGTCA
TGAGATTAAAATAATCCTTTCGCGATTTTTTATAACCATATGGTTTTTGT
GCGGCTCGTTTTATTCATAGAATTATATTTCACAGGTCTATCGACCTCTA
CGAAATAATTTAGATTTATAAATATTGTCTACTTCTTCATCTGTCGTCCA
TTCGTCAGAAGATATGGGCAGAGAAGACGTTGTTTTGGTCTTTGTCCTAG
GTTTTCGAACTAGGCGAAGGTTTGTTCTAGGGCTTCCTCTTACATGCCAA
ACGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAGCTTATGCAGATTTT
GCATTATCCGTTCTTTTTCGTCCTTTTTGCTCAGCAAAATACTTGTTTGA
GCCACAAAATTAAAAACTTAAACTATAATACTTATTTAATTGGGGTGAAT
TGCACATTGTGCATGTTTTTCTTGTTTTCTTTGATTTGTCAATATTTTGA
AATTTATCATCGATATGCTTAAATATTTCCAAGAATTCTGCCTAGACATC
CTTATAAGTGTTATGCTTATAGATAGTAGAATTTTAAAATTTCTTTTACG
TTTCATTGTTTCAGGCTGTTTATTGTTCAGATGAACAACTGGCTAAAGGA
ACACCTCGTCATTCAGCTTACGACTTTGTTCAAAGTAAGACGGTTAAATT
ACCCAAAATCCCCTCCCCTGTCCAATAAATAAACTCTTTCCAGGAAAAGC
ATTTCCAAAGTTTTAAATAATGGTTTCATTTTAAATTTATCCATGTACAT
GTTTGTAAATAGTGAAGTAATAATTTTTGAAACATTTTATTTTTTGAAAT
ATATTAACAGATCGTGCAGTAATTAAAAATCAATCCCCTAAAA

Coding sequence (CDS) from alignment at sc0000533:130001..138143-

>TCONS_00025401 ID=TCONS_00025401|Name=TCONS_00025401|organism=Clytia hemisphaerica|type=CDS|length=8136bp|location=Sequence derived from alignment at sc0000533:130001..138143- (Clytia hemisphaerica)
GCTGTTTATTGTTCAGATGAACAACTGGCTAAAGGAACACCTCGTCATTC
AGCTTACGACTTTGTTCAAAGTAAGACGGTTAAATTACCCAAAATCCCCT
CCCCTGTCCAATAAGTCACCACATGCAGCTCATTACAAGCTTGGTGATTT
GGGAATTGTTCCTCCAAGAAAAAAGAGTCCCACCAAAAAGAAAACAGACA
AAACAAAGCACGAGGATCCGACGGAAGATGCAGGACGAGTGGAGATGAAG
AATACGAACCTCCTCTACAAAGTCATCGAAATCCTTAAAGTTGCCGTTGA
AATGGGTGTCGGCATACAATTGGATGATTTCCTGGCCAAACGCACTTTGA
TCGCGAAGAAGAAATTGCATTGTGGTCTACCATCACAAATGACCATGCAA
TCCTGATACGAATGTTAACAGCCAAAGCTAGAGAGCAAGAAGAAACATTG
ATGGACTTCATGGAGAAAGAGAGCTCCTATAAAAAGCTAGAGTCAGATCA
CGCTAAATTGGAAGAAGTGTTAGAGACTTTACAAAAAGACCACGGGAGTT
TCAACGAAGAATATTTGGCATTGACTGAACGTTACCAGGAACTGGAAAAA
GAAAGAGATACTGTTTTGGATGATAAGAATTATTTGATTGGTATTTTATC
TGATGCCACGCAAGTCTTGAAACAAGCACTTCAGGTTGAAGAAAGAAATG
ATTTTACGAGTAAACACAGTGGCTGCAGAATTTCGTAAAGTATCTAATAA
ACAGATGGCTGACACCACCAAACGTACCATCCGTGAAAATGTGATGATCA
ACTCACAGCTATCCAAGATGTCTGACAAAACAGTCGAGTTGATCACAGAG
AATGATGAAGTAAAACTAAAGAATAAGAATCATAAACAGCATCTGGATGT
CTTGGAAGGAACTGAAAAAGAATTGATACGTAAAAATGCAGCTAACCAGA
AGNTAGATTTACGAAATAAGGACTTGGAAAAACAATTTGACCAGCAGGCA
TCAGATAAGAAAGAAATTGTTTCCTTTCTCAAAAAACAGTTGGAACAAAG
ATCAGATGAAATTGCTGATTTGCAAGAGAAAATAATTGGTGTTCAACAAG
CCAAAGATATTCAAAAGGATAAATATGAAGTTGAAATTACAACTGTTAAA
ACTGAAATGCAAGAAGTTAAAGACCAGTTAACATCTGAAAACATGGTTTT
ACAGGGAAAGCTAACTTCTTTGGAAGAATTTCGTGTCCAAAAAGAGACTT
TATTGAATAAATTTGCAGACATGGAACAACTTTTGAGGGATAAAGAAGAA
GATCATAAAGAGCAGATCTATCAATTGGAACGAAAAGCTGTTGTTGATAA
AGATAGGCTGTTTATTGTTCAGATGAACAACTGGCTAAAGGAACACCTCG
TCATTCAGCTTACGACTTTGTTCAAAGTAAGACGGTTAAATTACCCAAAA
TCCCCTCCCCTGTCCAATAAGTCACCACATGCAGCTCATTACAAGCTTGG
TGATTTGGGAATTGTTCCTCCAAGAAAAAAGAGTCCCACCAAAAAGAAAA
CAGACAAAACAAAGCACGAGGATCCGACGGAAGATGCAGGACGAGTGGAG
ATGAAGAATACGAACCTCCTCTACAAAGTCATCGAAATCCTTAAAGTTGC
CGTTGAAATGGGTGTCGGCATACAATTGGATGATTTCCTGGCCAAACGCA
CTTTGATCGCGAAGAAGAAATTGCATTGTGGTCTACCATCACAAATGACC
ATGCAATCCTGATACGAATGTTAACAGCCAAAGCTAGAGAGCAAGAAGAA
ACATTGATGGACTTCATGGAGAAAGAGAGCTCCTATAAAAAGCTAGAGTC
AGATCACGCTAAATTGGAAGAAGTGTTAGAGACTTTACAAAAAGACCACG
GGAGTTTCAACGAAGAATATTTGGCATTGACTGAACGTTACCAGGAACTG
GAAAAAGAAAGAGATACTGTTTTGGATGATAAGAATTATTTGATTGGTAT
TTTATCTGATGCCACGCAAGTCTTGAAACAAGCACTTCAGGTTGAAGAAA
GAAATGATTTTACGAGTAAACACAGTGGCTGCAGAATTTCGTAAAGTATC
TAATAAACAGATGGCTGACACCACCAAACGTACCATCCGTGAAAATGTGA
TGATCAACTCACAGCTATCCAAGATGTCTGACAAAACAGTCGAGTTGATC
ACAGAGAATGATGAAGTAAAACTAAAGAATAAGAATCATAAACAGCATCT
GGATGTCTTGGAAGGAACTGAAAAAGAATTGATACGTAAAAATGCAGCTA
ACCAGAAGNTAGATTTACGAAATAAGGACTTGGAAAAACAATTTGACCAG
CAGGCATCAGATAAGAAAGAAATTGTTTCCTTTCTCAAAAAACAGTTGGA
ACAAAGATCAGATGAAATTGCTGATTTGCAAGAGAAAATAATTGGTGTTC
AACAAGCCAAAGATATTCAAAAGGATAAATATGAAGTTGAAATTACAACT
GTTAAAACTGAAATGCAAGAAGTTAAAGACCAGTTAACATCTGAAAACAT
GGTTTTACAGGGAAAGCTAACTTCTTTGGAAGAATTTCGTGTCCAAAAAG
AGACTTTATTGAATAAATTTGCAGACATGGAACAACTTTTGAGGGATAAA
GAAGAAGATCATAAAGAGCAGATCTATCAATTGGAACGAAAAGCTGTTGT
TGATAAAGATAGGCTGTTTATTGTTCAGATGAACAACTGGCTAAAGGAAC
ACCTCGTCATTCAGCTTACGACTTTGTTCAAAGTAAGACGGTTAAATTAC
CCAAAATCCCCTCCCCTGTCCAATAAGTCACCACATGCAGCTCATTACAA
GCTTGGTGATTTGGGAATTGTTCCTCCAAGAAAAAAGAGTCCCACCAAAA
AGAAAACAGACAAAACAAAGCACGAGGATCCGACGGAAGATGCAGGACGA
GTGGAGATGAAGAATACGAACCTCCTCTACAAAGTCATCGAAATCCTTAA
AGTTGCCGTTGAAATGGGTGTCGGCATACAATTGGATGATTTCCTGGCCA
AACGCACTTTGATCGCGAAGAAGAAATTGCATTGTGGTCTACCATCACAA
ATGACCATGCAATCCTGATACGAATGTTAACAGCCAAAGCTAGAGAGCAA
GAAGAAACATTGATGGACTTCATGGAGAAAGAGAGCTCCTATAAAAAGCT
AGAGTCAGATCACGCTAAATTGGAAGAAGTGTTAGAGACTTTACAAAAAG
ACCACGGGAGTTTCAACGAAGAATATTTGGCATTGACTGAACGTTACCAG
GAACTGGAAAAAGAAAGAGATACTGTTTTGGATGATAAGAATTATTTGAT
TGGTATTTTATCTGATGCCACGCAAGTCTTGAAACAAGCACTTCAGGTTG
AAGAAAGAAATGATTTTACGAGTAAACACAGTGGCTGCAGAATTTCGTAA
AGTATCTAATAAACAGATGGCTGACACCACCAAACGTACCATCCGTGAAA
ATGTGATGATCAACTCACAGCTATCCAAGATGTCTGACAAAACAGTCGAG
TTGATCACAGAGAATGATGAAGTAAAACTAAAGAATAAGAATCATAAACA
GCATCTGGATGTCTTGGAAGGAACTGAAAAAGAATTGATACGTAAAAATG
CAGCTAACCAGAAGNTAGATTTACGAAATAAGGACTTGGAAAAACAATTT
GACCAGCAGGCATCAGATAAGAAAGAAATTGTTTCCTTTCTCAAAAAACA
GTTGGAACAAAGATCAGATGAAATTGCTGATTTGCAAGAGAAAATAATTG
GTGTTCAACAAGCCAAAGATATTCAAAAGGATAAATATGAAGTTGAAATT
ACAACTGTTAAAACTGAAATGCAAGAAGTTAAAGACCAGTTAACATCTGA
AAACATGGTTTTACAGGGAAAGCTAACTTCTTTGGAAGAATTTCGTGTCC
AAAAAGAGACTTTATTGAATAAATTTGCAGACATGGAACAACTTTTGAGG
GATAAAGAAGAAGATCATAAAGAGCAGATCTATCAATTGGAACGAAAAGC
TGTTGTTGATAAAGATAGGCTGTTTATTGTTCAGATGAACAACTGGCTAA
AGGAACACCTCGTCATTCAGCTTACGACTTTGTTCAAAGTAAGACGGTTA
AATTACCCAAAATCCCCTCCCCTGTCCAATAAGTCACCACATGCAGCTCA
TTACAAGCTTGGTGATTTGGGAATTGTTCCTCCAAGAAAAAAGAGTCCCA
CCAAAAAGAAAACAGACAAAACAAAGCACGAGGATCCGACGGAAGATGCA
GGACGAGTGGAGATGAAGAATACGAACCTCCTCTACAAAGTCATCGAAAT
CCTTAAAGTTGCCGTTGAAATGGGTGTCGGCATACAATTGGATGATTTCC
TGGCCAAACGCACTTTGATCGCGAAGAAGAAATTGCATTGTGGTCTACCA
TCACAAATGACCATGCAATCCTGATACGAATGTTAACAGCCAAAGCTAGA
GAGCAAGAAGAAACATTGATGGACTTCATGGAGAAAGAGAGCTCCTATAA
AAAGCTAGAGTCAGATCACGCTAAATTGGAAGAAGTGTTAGAGACTTTAC
AAAAAGACCACGGGAGTTTCAACGAAGAATATTTGGCATTGACTGAACGT
TACCAGGAACTGGAAAAAGAAAGAGATACTGTTTTGGATGATAAGAATTA
TTTGATTGGTATTTTATCTGATGCCACGCAAGTCTTGAAACAAGCACTTC
AGGTTGAAGAAAGAAATGATTTTACGAGTAAACACAGTGGCTGCAGAATT
TCGTAAAGTATCTAATAAACAGATGGCTGACACCACCAAACGTACCATCC
GTGAAAATGTGATGATCAACTCACAGCTATCCAAGATGTCTGACAAAACA
GTCGAGTTGATCACAGAGAATGATGAAGTAAAACTAAAGAATAAGAATCA
TAAACAGCATCTGGATGTCTTGGAAGGAACTGAAAAAGAATTGATACGTA
AAAATGCAGCTAACCAGAAGNTAGATTTACGAAATAAGGACTTGGAAAAA
CAATTTGACCAGCAGGCATCAGATAAGAAAGAAATTGTTTCCTTTCTCAA
AAAACAGTTGGAACAAAGATCAGATGAAATTGCTGATTTGCAAGAGAAAA
TAATTGGTGTTCAACAAGCCAAAGATATTCAAAAGGATAAATATGAAGTT
GAAATTACAACTGTTAAAACTGAAATGCAAGAAGTTAAAGACCAGTTAAC
ATCTGAAAACATGGTTTTACAGGGAAAGCTAACTTCTTTGGAAGAATTTC
GTGTCCAAAAAGAGACTTTATTGAATAAATTTGCAGACATGGAACAACTT
TTGAGGGATAAAGAAGAAGATCATAAAGAGCAGATCTATCAATTGGAACG
AAAAGCTGTTGTTGATAAAGATAGGCTGTTTATTGTTCAGATGAACAACT
GGCTAAAGGAACACCTCGTCATTCAGCTTACGACTTTGTTCAAAGTAAGA
CGGTTAAATTACCCAAAATCCCCTCCCCTGTCCAATAAGTCACCACATGC
AGCTCATTACAAGCTTGGTGATTTGGGAATTGTTCCTCCAAGAAAAAAGA
GTCCCACCAAAAAGAAAACAGACAAAACAAAGCACGAGGATCCGACGGAA
GATGCAGGACGAGTGGAGATGAAGAATACGAACCTCCTCTACAAAGTCAT
CGAAATCCTTAAAGTTGCCGTTGAAATGGGTGTCGGCATACAATTGGATG
ATTTCCTGGCCAAACGCACTTTGATCGCGAAGAAGAAATTGCATTGTGGT
CTACCATCACAAATGACCATGCAATCCTGATACGAATGTTAACAGCCAAA
GCTAGAGAGCAAGAAGAAACATTGATGGACTTCATGGAGAAAGAGAGCTC
CTATAAAAAGCTAGAGTCAGATCACGCTAAATTGGAAGAAGTGTTAGAGA
CTTTACAAAAAGACCACGGGAGTTTCAACGAAGAATATTTGGCATTGACT
GAACGTTACCAGGAACTGGAAAAAGAAAGAGATACTGTTTTGGATGATAA
GAATTATTTGATTGGTATTTTATCTGATGCCACGCAAGTCTTGAAACAAG
CACTTCAGGTTGAAGAAAGAAATGATTTTACGAGTAAACACAGTGGCTGC
AGAATTTCGTAAAGTATCTAATAAACAGATGGCTGACACCACCAAACGTA
CCATCCGTGAAAATGTGATGATCAACTCACAGCTATCCAAGATGTCTGAC
AAAACAGTCGAGTTGATCACAGAGAATGATGAAGTAAAACTAAAGAATAA
GAATCATAAACAGCATCTGGATGTCTTGGAAGGAACTGAAAAAGAATTGA
TACGTAAAAATGCAGCTAACCAGAAGNTAGATTTACGAAATAAGGACTTG
GAAAAACAATTTGACCAGCAGGCATCAGATAAGAAAGAAATTGTTTCCTT
TCTCAAAAAACAGTTGGAACAAAGATCAGATGAAATTGCTGATTTGCAAG
AGAAAATAATTGGTGTTCAACAAGCCAAAGATATTCAAAAGGATAAATAT
GAAGTTGAAATTACAACTGTTAAAACTGAAATGCAAGAAGTTAAAGACCA
GTTAACATCTGAAAACATGGTTTTACAGGGAAAGCTAACTTCTTTGGAAG
AATTTCGTGTCCAAAAAGAGACTTTATTGAATAAATTTGCAGACATGGAA
CAACTTTTGAGGGATAAAGAAGAAGATCATAAAGAGCAGATCTATCAATT
GGAACGAAAAGCTGTTGTTGATAAAGATAGGCTGTTTATTGTTCAGATGA
ACAACTGGCTAAAGGAACACCTCGTCATTCAGCTTACGACTTTGTTCAAA
GTAAGACGGTTAAATTACCCAAAATCCCCTCCCCTGTCCAATAAGTCACC
ACATGCAGCTCATTACAAGCTTGGTGATTTGGGAATTGTTCCTCCAAGAA
AAAAGAGTCCCACCAAAAAGAAAACAGACAAAACAAAGCACGAGGATCCG
ACGGAAGATGCAGGACGAGTGGAGATGAAGAATACGAACCTCCTCTACAA
AGTCATCGAAATCCTTAAAGTTGCCGTTGAAATGGGTGTCGGCATACAAT
TGGATGATTTCCTGGCCAAACGCACTTTGATCGCGAAGAAGAAATTGCAT
TGTGGTCTACCATCACAAATGACCATGCAATCCTGATACGAATGTTAACA
GCCAAAGCTAGAGAGCAAGAAGAAACATTGATGGACTTCATGGAGAAAGA
GAGCTCCTATAAAAAGCTAGAGTCAGATCACGCTAAATTGGAAGAAGTGT
TAGAGACTTTACAAAAAGACCACGGGAGTTTCAACGAAGAATATTTGGCA
TTGACTGAACGTTACCAGGAACTGGAAAAAGAAAGAGATACTGTTTTGGA
TGATAAGAATTATTTGATTGGTATTTTATCTGATGCCACGCAAGTCTTGA
AACAAGCACTTCAGGTTGAAGAAAGAAATGATTTTACGAGTAAACACAGT
GGCTGCAGAATTTCGTAAAGTATCTAATAAACAGATGGCTGACACCACCA
AACGTACCATCCGTGAAAATGTGATGATCAACTCACAGCTATCCAAGATG
TCTGACAAAACAGTCGAGTTGATCACAGAGAATGATGAAGTAAAACTAAA
GAATAAGAATCATAAACAGCATCTGGATGTCTTGGAAGGAACTGAAAAAG
AATTGATACGTAAAAATGCAGCTAACCAGAAGNTAGATTTACGAAATAAG
GACTTGGAAAAACAATTTGACCAGCAGGCATCAGATAAGAAAGAAATTGT
TTCCTTTCTCAAAAAACAGTTGGAACAAAGATCAGATGAAATTGCTGATT
TGCAAGAGAAAATAATTGGTGTTCAACAAGCCAAAGATATTCAAAAGGAT
AAATATGAAGTTGAAATTACAACTGTTAAAACTGAAATGCAAGAAGTTAA
AGACCAGTTAACATCTGAAAACATGGTTTTACAGGGAAAGCTAACTTCTT
TGGAAGAATTTCGTGTCCAAAAAGAGACTTTATTGAATAAATTTGCAGAC
ATGGAACAACTTTTGAGGGATAAAGAAGAAGATCATAAAGAGCAGATCTA
TCAATTGGAACGAAAAGCTGTTGTTGATAAAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014265XLOC_014265Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025401-proteinTCONS_00025401-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025401-exon-sc0000533-1575043694:137739..138143TCONS_00025401-exon-sc0000533-1575043694:137739..138143Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1575043694:137098..137365TCONS_00025401-exon-sc0000533-1575043694:137098..137365Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1575043694:136045..136326TCONS_00025401-exon-sc0000533-1575043694:136045..136326Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1575043694:134660..134853TCONS_00025401-exon-sc0000533-1575043694:134660..134853Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1575043694:131832..131925TCONS_00025401-exon-sc0000533-1575043694:131832..131925Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1575043694:130001..130279TCONS_00025401-exon-sc0000533-1575043694:130001..130279Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1510915933:137739..138143TCONS_00025401-exon-sc0000533-1510915933:137739..138143Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1510915933:137098..137365TCONS_00025401-exon-sc0000533-1510915933:137098..137365Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1510915933:136045..136326TCONS_00025401-exon-sc0000533-1510915933:136045..136326Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1510915933:134660..134853TCONS_00025401-exon-sc0000533-1510915933:134660..134853Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1510915933:131832..131925TCONS_00025401-exon-sc0000533-1510915933:131832..131925Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1510915933:130001..130279TCONS_00025401-exon-sc0000533-1510915933:130001..130279Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1491911889:137739..138143TCONS_00025401-exon-sc0000533-1491911889:137739..138143Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1491911889:137098..137365TCONS_00025401-exon-sc0000533-1491911889:137098..137365Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1491911889:136045..136326TCONS_00025401-exon-sc0000533-1491911889:136045..136326Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1491911889:134660..134853TCONS_00025401-exon-sc0000533-1491911889:134660..134853Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1491911889:131832..131925TCONS_00025401-exon-sc0000533-1491911889:131832..131925Clytia hemisphaericaexon
TCONS_00025401-exon-sc0000533-1491911889:130001..130279TCONS_00025401-exon-sc0000533-1491911889:130001..130279Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000533supercontigsc0000533:130001..138143 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.9704	12.4336	7.46263	6.45659	82.9988	60.5696	28.6305	33.8929	21.4815	20.32	21.5391	23.2746	4.33817	3.16565	2.5565	5.52071	4.76967	6.31618	7.40746	6.36054	7.26506	6.91253	12.9384	10.332	53.4689	29.6098	13.9776	12.4419	4.27868	6.07319
Blast
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BLAST of TCONS_00025401 vs. Swiss-Prot (Human)
Match: CF157 (Cilia- and flagella-associated protein 157 OS=Homo sapiens GN=CFAP157 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.710e-58
Identity = 107/233 (45.92%), Postives = 170/233 (72.96%), Query Frame = 2 
Query:   17 KDLEKQFDQQASDKKEIVSFLKKQLEQRSDEIADLQEKIIGVQQAKDIQKDKYEVEITTVKTEMQEVKDQLTSENMVLQGKLTSLEEFRVQKETLLNKFADMEQLLRDKEEDHKEQIYQLERKAVVDKDRLKKEMILRVNTVAAEFRKVSNKQMADTTKRTIRENVMINSQLSKMSDKTVELITENDEVKLKNKNHKQHLDVLEGTEKELIRKNAANQKLIRMLTAKAREQEE 715
            K   ++F+Q A++KKEIV+FLK+ L Q+ DEI DL E++  +Q AK+++KD +E ++  V+ E QE KDQLT+EN++L GKL +LEEFR+QKE + +KF  +E+ +R +E + ++  Y LE+K+V+DKDRL+KE+I RVN VA EF KV+  +M +TTKR I+EN  I  Q++++S + ++L+ EN+++K +  N  + L++LE T+K + R    +QK+I MLT K +EQ++
Sbjct:   67 KMFRQEFEQLANNKKEIVAFLKRTLNQQVDEITDLNEQLQNLQLAKEMEKDAFEAQLAQVRHEFQETKDQLTTENIILGGKLAALEEFRLQKEEVTDKFTLLEEQVRKQENEFRDYAYNLEKKSVLDKDRLRKEIIQRVNLVANEFHKVTTNRMWETTKRAIKENNGITLQMARVSQQGMKLLQENEQLKGRQNNLCKQLELLENTQKVMARHKRGHQKIILMLTKKCQEQQQ 299
The following BLAST results are available for this feature:
BLAST of TCONS_00025401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CF1571.710e-5845.92Cilia- and flagella-associated protein 157 OS=Homo... [more]
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