TCONS_00025073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025073
Unique NameTCONS_00025073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1151

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025073 ID=TCONS_00025073|Name=TCONS_00025073|organism=Clytia hemisphaerica|type=transcript|length=1151bp
tttatgataaaaatgtTTCTAAACAGATAAAATAATAAAGGAGGATGGCT
TTTCACAAAACTCTAACATGCTTGAGGACTATCCACCCTACATCGGATAT
TTTTCTTGTTGCCAAATCATTTTCAACGTCCAGTATAGCATACAAGAAAA
CACCACACACTGTTGGTGTCATGTCATGGGTGAAAGCCAACAAAAGAAGG
AAACATTTAGAGAAGAAAATGAAGGAGAAACCAAGGGAAGACCACCAGAT
TGTGAAAGAACACATCTTAGAAAGAATGGAACCAGAGATTGAATTTTTGA
CCAGCAGTAGAGTAAAGACACGAATGAATGAAGAAGTCATGAACAGAAAC
TCCACTGAACCAACagtatttttatcaaaagacaGACAAACCATCATCTG
CTACCATCCACCACCACCCTCTCTCCCTGAACAATTTACTAAGagagCAA
CTGCCTCCAAGAAACTTGGCTTGACATCTGCAGTATTTGAACATTTCCAA
GACAGTCTTACCGATGATCAAatcCAAGAAGCGAAGAATCTCCGTGAGCA
GGATCCTGTATTATGGAGTGCAAATGCTCTAGCTGTTCTTATGCAAGCCA
CACCTCAAACAATCAATGAGCATATACCATTAACACGCGACCAGTCGAGT
ATTGTTCGCGCGGAAAAAGAACTTTACGGAACAATGTCTGTCAACAATCG
AAAGAAATTCAAGGATTTGCAAGTCTGGGAGCGCATGAAATATGTCAATG
AAACGAGAGATGAGAAATTTGCACATTGGTATcagaatttcaacaaaaaa
tcttCAGTCAAAGCACCTGTACCTCCTAAGCGGTAACACAATCTTGCACA
ACCCCCTAGTTTTgcacttttgcaatttttgtacTATGTAGAAGAGAGAG
AGGTAtgaataatattttattttgatattttttttcgtaaATAGATGCtc
tttaaattgttttgaagttatcaaaaaagttaactttctcgttttctttt
tggattttttgatttCTCCGCTGCGCTATTGTTGATaatcggtaattagt
tcttacaaagtaaacaagggatggcacacattatgagaattttttttttc
tttttacctgTAAACAATAAATAGTGTGTCAAAGAATTTGTAAGTTTTTG
T
Run BLAST on NCBI

transcript from alignment at sc0000520:213578..220505-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025073 ID=TCONS_00025073|Name=TCONS_00025073|organism=Clytia hemisphaerica|type=transcript|length=6928bp|location=Sequence derived from alignment at sc0000520:213578..220505- (Clytia hemisphaerica)
TTTATGATAAAAATGTTTCTAAACAGATAAAATAATAAAGGAGGATGGCT
TTTCACAAAACTCTAACATGCTTGAGGACTATCCACCCTACATCGGATAT
TTTTCTTGTTGGTAAGTCTTTCATTCTATTCCTTTTTTTCTTTTTTTATC
TTGTCTGACCTGGTCTGACCAGTACAAATCCTGACAGTATAGTAGCTCCC
ATAAAATATAAGTACCAATCATTTTCACCGAACTCGATCCTTATCCGCAC
CATTTACTTCAAAACCAAAAAACCATTATCTTATCTCTAATTCAATACTA
TCATGAGTCTCTTGTGTATGTCTGATAATGTGAAATTAATCGAAGGTTCT
TAAAGGTCTTTTGACGACGAAGCAATTGATTAGAGAGAAAGTGTTTGTTG
TTTTTGAATGTTGAATTATGTTTATGGTGAAAAGCAACATCTAACATGTT
TCAGCCTTACAGCTTTCATTTTCAAAACTGGTGGAATTTAAACTTTCTTT
CCCTTTCATTTCCCATCAGCCAAATCATTTTCAACGTCCAGTATAGCATA
CAAGAAAACACCACACACTGTTGGTGTCATGTCATGGGTGAAAGCCAACA
AAAGAAGGAAACATTTAGAGAAGAAAATGAAGGAGAAACCAAGGGAAGAC
CACCAGATTGTGAAAGAACACATCTTAGAAAGAATGGAACCAGAGATTGA
ATTTTTGACCAGCAGTAGAGTAAAGACACGAATGAATGAAGAAGTCATGA
ACAGAAACTCCACTGAGTAAGATTTCAATTAAAATGTTTTGTTAACACCA
AGCCGAAATTATTTTTGATTGCTTTAAAATGGGTTAAGTGCAATCAGAAG
GGTCAAACTAGTTTTCATAAAGCAAAAACTAGCTTTGAAAATCATTTCCT
GGCACATTAACTCCTTGACGTTCTCAAAAAGCTAAAAAATCACATTTTAA
AGATTTTTCAATGCTTAAAATTTTGAATCGAATTATGTTGGCTTTGGTGA
TAGCTAGCCAGATTTTTGAATTAGGTCCTCAATCAAAACTACTGGCAGCC
GAAAAAATCGTTCCTGAGAGAACAAAATTTCGCTCAAGATGACGAGGGTT
AATCCTTTTAAATTTTATTACTCTAAACCTTCTTGACGTTATTCACTTTT
CCTGCACAGAAAAATATACCTAGTTACATTGTCTACTCAGATTTATTCAG
CCAAAACTTTCCTATTTAATCATTGAGGTCAAGGATCAATGAATTATGTT
TATTGTTTTATGTTTTGGTTTCTTTTAGACCAACAGTATTTTTATCAAAA
GACAGACAAACCATCATCTGCTACCATCCACCACCACCCTCTCTCCCTGA
ACAATTTACTAAGGTCTGTAGTAAGTGCATAAGCAGAGTACTCATGTCAA
TCTGTCTACAATTCTGCAACTGATAGAACCTTTTTACAGTACAGTACCTT
TCGATATGATGATTATGAGAAGGACTTTGTAAAACAAAGTTTTCATAGTT
GCAAATTTTGAGGAGCCATTCCGCATGTTGACTACGAACGTAATTCCTTT
TACACGTTACGAAAGCAGAGTCTAGAAATGCTTTTGCTTATTCCAAAGTT
TACTCCACTGCCATTCTTCTTGAAAGATTGGAGACATCTCTATGTGTGCT
ATCAAAGGGTGCAGCATAGGGTCGTTTCACGCCTAGGCCGCCTACTGTTT
ATCCAAACAAAAGTACACGTGGTGTAGTCTGGTAGTATGAACGCAAGTAT
GGCTTTTCACGACGTACACAGTATCTGCAATTTAGGTTTACTTTTTAACA
TTTTTTTTTTCAGAGAGCAACTGCCTCCAAGAAACTTGGCTTGACATCTG
CAGTATTTGAACATTTCCAAGACAGTCTTACCGATGATCAAGTATATTTC
TCAATTTTTCTTGTCTTAATAAATATATTTTTTATTTACGTGGATTTGAT
TTAGGTTACTTGTCTGACAACTTTTATATTTTTATAGCTTTTCATATAGT
AATGCGTGCCTGCCAATAATTTCATTTCATTTAACTCCTTTTTCTTAATG
ATTTATAGTGATCAGTTTTCTTCTCATTGATTCAAAGCTTTGTAATGATT
GAAATAAATGTCAGAAAATTGACTCATCAATACAACATATTTTGTTAAAT
TTACATGATTCACAAGCGAGTCTTTTTAATTTTTCAGATCCAAGAAGCGA
AGAATCTCCGTGAGCAGGATCCTGTATTATGGAGTGCAAATGCTCTAGCT
GTTCTTATGCAAGCCACACCTCAAACAATCAAGTAAAGATTATAAAAACT
TAAAGAAAAAATTGCTACTAAAGTCTATTCCAGATATAATGGGCAGTGGA
AACAAGAATGCCTGTAACTTTTGATAGTTTTTTTTGCTTGTTTTAAAAAA
TCAAAAGCACTATTTGAATATATTTTTAGTTGAAAAATTCGCGATTTTTA
GCGGTTAAATATGCAGTTGCAAAAATTGAGCTTTTTTTCTACTTATGCTA
CAACGTTTATTTTTACACAAGTGGTAGTTAAAACTTAGGTTAAGAAGGTT
GTGATATTTCAATGCAAACGGAAATATTCTTTCGGAAGATATTGGACCCG
AAATAGCTAGCACTTTTCTGTGAAATATCAAATCTCCAAATTCTTACTAA
AAACGGGGGTTATGTTATCTTTTTTGAACAGTGTAATTAAAAGTTGGAAA
ATGTTAAGTTTTAATAAAATGCATTGGTATTATCGGTATCATTGATTATT
TCGAAACGAAGTGAAATTAAAGTATGATTGTTTTATTGAAACGATAAGCA
TATTGAACTTATATTGCCTTTGTTTTTTTTAAGTAATCAAAGAACTTTGC
TAATTCCCAGCACAGTTTGGCTACGAGGTCATTATCGTAAAAATATCGTA
AAATGTGTTATGATTGAAAAACTGTTTTATCATGACTAATCTCGTTTTTA
TTAAAAATTAGGAGATTTAATGTTTCATAGAAAAGTGCTAGCAAGGGGTA
TTTCAGGTCCCATTTCTTCCAAAGGACTTTTCCGTTTGCCTTGAAATTTT
TTAAACAACTTTCTTAACCTCATGACTAATCTCGTTTTTATTAAAAATTT
GGAGATTTAATGTTTCATAGAAAAGTAAGGTTGAACTACCTAAGGTTGAA
CTACCACTGGTGTAAAAATGAACGTTGTAGCATAAGTAGGAAAAAGCTTA
ATTTTTGCAACTGCATATTTAACCGCTAAAAATCGCGAATTTTTCAGCCA
AAAATACATTCAAATATAGCGCTTTTGATTCTCTAAAACAAGCAAAGAAA
TTTTCGAAATTATATCGGACTATCAAGAGTTAAAGTCATTCTTGTTTCGA
CTGCCTATTATATCTGGATACACTTTAGAATCTTTTTCACTTGTGATACT
CGTGATACTTGTTTCTTAAAATATTTGTAGCTTGAGTGAAATAAAGTTTC
TGCACTGCATTACTGGTTTAAACTCTAAACAAACACAATAATTAAGACAA
GAAGGAAATGGTGTAATTTACTTTGATCTTCCTTTTCTCTAATTCTCTCA
AGAATAATCCTGACTTCTAATTTTGATCTTTAAAAAAAATTTAGCTCCAA
ATAACACAAGACAGACAGACAGTCAAAACACTCCTGCCTCTGTGACCCAG
TGGGATCCACCCCACTCGTCACCCCAGTGAAAAATATTCCCAAAAATCGC
CCATTTTTTCACCCCAGTAGATAAATCACTCACCCCAATGGAATGCTGTA
ACTGAAAATGACCCCATTGAAAGATACGAAGAATCCGCACATACCCCACT
CAAAATTTTATGATTTTGACGTACCCCAGTAGAATTCTCACATCAAAAGG
TTCACCCCACTAGAATCTCCCCTTCTCTTATGGAATCAACTTTTTGAATT
AACGAAATGCACAAAAAGGCTCAATTTTTTTTGCTCCCTTCGCTCGCAAT
CAAAACTGTATAATTTGTCCATATCACCGTGTCGTCAAAAGTAGTAGCAA
GTTATGATCTAAACAGATGGTCTAAAATATATCCGATATGTATGAAAGTC
CTTATCTTTAATAAAAAGGCAAGAGCAAAATATTTTTCCGTTTTTCAGTC
AAGCTTTTCTCAAAAAATAGGTCGGTCGTGGGTTGATCATTCAAGTTCGT
AAATCAGAACCGAAAATAATGATGACCTTCAGGTAGGCTTGATGACTAGA
GAAAAAATGATGAATATGCAAGTTGCTGGGTTAAATAAAAATGAAGCATG
AAAACTTTGATAGGACATGAATAAATTAATTGAAATTGTTTTTGTTTTTT
TCATTTTTCAAAGTTGCAAAATTCGTAAAAAAGGAGTGATTTTAGCCTAC
AAAAGAGAGTCAAAAATCTAAAATTTTCCCCGTCGGCGCAAACCATGGTT
GCCCCTCCTTAGTCACTACATCTTAAAACACTACATTTTAAAATTATGTT
CATAGTCTCCATTACTTTCAGAGAAATGTTCTTACAGACTCCACTTTTAC
TTTATCCATAGAACATACCAGTATGAGTATATGAGAAAATCCTTTTAATT
TACGCAGTTAATTCTAGTCAGTAGGGCAAAGTCTCCCGATTGGGAGACAA
CCCTGTATCGAACTCCGTGGCTGCGTGAATTCGCGGAAAAATATTTTTGC
TTGGAAAAGCTTATGAACAATTTTCAAAGTAGAATATTTTAAAATTTTGT
TGGTCAATTTTAAAATCATTCGGTCAAAAGTGGAAAAATTCATTTATCTT
TCCATTGATCCATTTTTTAGCTTCCCCTCTTGCCCCAATTTCCCCCCTTT
TTCACTTCAAGATTTACGCTGTATGGACGTTGAATGAATGTCGCTCTTGC
AAAATCGTTTCCCCTTCGGGAGGCGTCTCCCAAGCGGGATTCGTCTCCCG
ATCGAGGTATATTGCCCTATTGTTAGTAATGGATAATGTTTCGTGTTTTT
ATGATTTAAAGTCTTATACCTCACCCTTTCAACGCAGTTGAAAAATATAT
TCCCTATCAGTAGCCTCAGATAGTGTAACAACGACTCCGCACTACATTTC
ATAATTTAACATTTGACTAGCACTGCTAGCTACTCTACCTCAGAATAAAC
TTTCAGAAAGATTTTCTTCACCCCAGTGATAATCAAGCAAAAATTAGTCA
CCCCACTCAATTTTTTGGGAAATATCTAGGGGAATTTCAGATTTTTCACA
TCCCACCCCACTGGATGTTTCACACCGCCCACTGGGGTACAGAGACAGGA
GTGTGTCAAATACCCAATAAACAAACGGGACAATCTTCCTTGCAAAAGTT
GTTTAGAATGATTTCGTTTTTATTTTCAGTGAGCATATACCATTAACACG
CGACCAGTCGAGTATTGTTCGCGCGGAAAAAGAACTTTACGGAACAATGT
CTGTCAACAATCGAAAGAAATTCAAGGATTTGCAAGTCTGGGTATGATGA
ATCTACTGTTAAGTTTGGTTGTAAAACTCATGAAAGTTAGAAAAAGTCTT
GTACGGAGCTAATGATAAACTCTTTCTAACTTTCCGAAGCTTTAATTCTG
ATTGTGAATCAGAATATCACAACCAAGAGGTCTTTAGCCATTATTTTCAG
TGAGCATATACCATTAACACGCGACCAGTCGAGTATTGTTCGCGCGGAAA
AAGAACTTTACGGAACAATGTCTGTCAACAATCGAAAGAAATTCAAGGAT
TTGCAAGTCTGGGTATGATGAATCTACTGTTAAGTTTGGTTGTAAAACTC
ATGAAAGTTAGAAAAAGTCTTGTACGGAGCTAATGATAAACTCTTTCTAA
CTTTCCGAAGCTTTAATTCTGATTGTGAATCAGAATATCACAACCAAGAG
GTCTTTAGCCAATAGCGAGTTTATGTATTCGAGATAAATCGAAGTTGACG
GTATAAAAGTTGATGTCGCCAAAATCGCCATCCACTCTGCTCGACAACGT
TAAAAAACCCCGACATACCGTGTCGTCTGTTTAGGTGAGCAAAGGCGATA
TAGAGCAGTACATCAACTATCGACTTTGTTTTACGTCGACTTCACTTACC
GTCGCTCTCGATATCTTCCGATACATAAACTCGCTAATATCCCGGGCAAG
GACTTCTTTCTGGAATAATCCATCTAATGCAGATTCCTAAATCTCCACAG
CAAATTCTAGGGAGGGTATGCAATCTTCGTAAGGTTAACGGTCCGCTTTG
ATAGATTTCCCATCAAAATGGGTGAATTTAAATTTTTTAAGCTTTTGAGT
GCAGAGTTTGGCTTAAAGTTAAACCTTCGCACCAAACTATACGCCAATCA
TGATCAAGACATTATAACCAAGTAACTTTCGCAAAACAACGAATTGTTTT
GGCTGAACAATCAGCTCAGATCATCACATTCGCTACACCTCTTAAGAGCA
GAGCGTAGTGCTGAAAAATTCCCCTAGCAACCAAATTTCAATCGGTTGCT
GTGATTGAATGATTCTGAATGAGAAAAATAATTTTTACACAATTTCACTT
ATTAGGAGCGCATGAAATATGTCAATGAAACGAGAGATGAGAAATTTGCA
CATTGGTATCAGAATTTCAACAAAAAATCTTCAGTCAAAGCACCTGTACC
TCCTAAGCGGTAACACAATCTTGCACAACCCCCTAGTTTTGCACTTTTGC
AATTTTTGTACTATGTAGAAGAGAGAGAGGTATGAATAATATTTTATTTT
GATATTTTTTTTCGTAAATAGATGCTCTTTAAATTGTTTTGAAGTTATCA
AAAAAGTTAACTTTCTCGTTTTCTTTTTGGATTTTTTGATTTCTCCGCTG
CGCTATTGTTGATAATCGGTAATTAGTTCTTACAAAGTAAACAAGGGATG
GCACACATTATGAGAATTTTTTTTTTCTTTTTACCTGTAAACAATAAATA
GTGTGTCAAAGAATTTGTAAGTTTTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014094XLOC_014094Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025073-exon-sc0000520-1575043694:220395..220505TCONS_00025073-exon-sc0000520-1575043694:220395..220505Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1575043694:219740..219986TCONS_00025073-exon-sc0000520-1575043694:219740..219986Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1575043694:219143..219227TCONS_00025073-exon-sc0000520-1575043694:219143..219227Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1575043694:218615..218692TCONS_00025073-exon-sc0000520-1575043694:218615..218692Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1575043694:218224..218318TCONS_00025073-exon-sc0000520-1575043694:218224..218318Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1575043694:214794..214905TCONS_00025073-exon-sc0000520-1575043694:214794..214905Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1575043694:213578..214000TCONS_00025073-exon-sc0000520-1575043694:213578..214000Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1510915933:220395..220505TCONS_00025073-exon-sc0000520-1510915933:220395..220505Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1510915933:219740..219986TCONS_00025073-exon-sc0000520-1510915933:219740..219986Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1510915933:219143..219227TCONS_00025073-exon-sc0000520-1510915933:219143..219227Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1510915933:218615..218692TCONS_00025073-exon-sc0000520-1510915933:218615..218692Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1510915933:218224..218318TCONS_00025073-exon-sc0000520-1510915933:218224..218318Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1510915933:214794..214905TCONS_00025073-exon-sc0000520-1510915933:214794..214905Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1510915933:213578..214000TCONS_00025073-exon-sc0000520-1510915933:213578..214000Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1491911889:220395..220505TCONS_00025073-exon-sc0000520-1491911889:220395..220505Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1491911889:219740..219986TCONS_00025073-exon-sc0000520-1491911889:219740..219986Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1491911889:219143..219227TCONS_00025073-exon-sc0000520-1491911889:219143..219227Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1491911889:218615..218692TCONS_00025073-exon-sc0000520-1491911889:218615..218692Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1491911889:218224..218318TCONS_00025073-exon-sc0000520-1491911889:218224..218318Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1491911889:214794..214905TCONS_00025073-exon-sc0000520-1491911889:214794..214905Clytia hemisphaericaexon
TCONS_00025073-exon-sc0000520-1491911889:213578..214000TCONS_00025073-exon-sc0000520-1491911889:213578..214000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000520supercontigsc0000520:213578..220505 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
58.0936	56.5219	33.5803	32.0184	17.5224	14.5086	17.2135	19.4243	16.8683	23.1742	22.7605	20.5539	33.8445	40.7356	26.3893	24.6715	30.18	35.4255	18.5918	14.307	22.2356	22.4816	30.13	26.5484	27.537	31.072	12.8126	14.247	20.7293	19.6911
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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