TCONS_00024934 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024934
Unique NameTCONS_00024934
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024934 ID=TCONS_00024934|Name=TCONS_00024934|organism=Clytia hemisphaerica|type=transcript|length=691bp
ccctagtaccccccccccgcaggtcggtcattttgtctcattttaagttt
tcaagttttagttAATTGTCTTGGggacttgaacttgattcaggtaactc
tcatccttgttgttgcaaatgcaacctgtagatgactgactgatgttgtt
ttttctgaaagcttgatttcctagtgtagTGTGATTAACtgaagttagag
cagttgacggtagcatATCAGCAAAAAATTGTCTGAACGTATTATTGCAT
TCCAATCAACAATCTGTGGCAAACCAGCACACAGCAGGCTGTACAGGTAA
AGGGACCTCAGAATGTATATGTTTAATATACATCATCATCAATCTGTAAA
GTAGCAAAAAAGTGGACAAGACCATGGTTTGAACTCAAGTTGTTTAAACC
CAAGTTGTTTTTGTTTCTAGAGGGTGCCCTAAAATGGATGACAGATTggg
tgaaaaacatttttccagaaaagaagagtcccctgcccagttgacGACCA
GTTGGAGTCTAGTCTGCAACCAAATGTTTTTTAACCCAGAaattcataca
aaaacaaacctccgGAGAATTTCTTTTAGTAGTTATATTCCTTGGCCCTT
ACAGTACTGTGTAAAGAAATTCTAGAATTAAGAACGAGTGAATCAGAAAG
ATCCAACTttaataagattttaattatcattttgattttag
Run BLAST on NCBI

transcript from alignment at sc0000513:207874..208564

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024934 ID=TCONS_00024934|Name=TCONS_00024934|organism=Clytia hemisphaerica|type=transcript|length=691bp|location=Sequence derived from alignment at sc0000513:207874..208564 (Clytia hemisphaerica)
ctaaaatcaaaatgataattaaaatcttattaaAGTTGGATCTTTCTGAT
TCACTCGTTCTTAATTCTAGAATTTCTTTACACAGTACTGTAAGGGCCAA
GGAATATAACTACTAAAAGAAATTCTCcggaggtttgtttttgtatgaat
tTCTGGGTTAAAAAACATTTGGTTGCAGACTAGACTCCAACTGGTCgtca
actgggcaggggactcttcttttctggaaaaatgtttttcacccAATCTG
TCATCCATTTTAGGGCACCCTCTAGAAACAAAAACAACTTGGGTTTAAAC
AACTTGAGTTCAAACCATGGTCTTGTCCACTTTTTTGCTACTTTACAGAT
TGATGATGATGTATATTAAACATATACATTCTGAGGTCCCTTTACCTGTA
CAGCCTGCTGTGTGCTGGTTTGCCACAGATTGTTGATTGGAATGCAATAA
TACGTTCAGACAATTTTTTGCTGATatgctaccgtcaactgctctaactt
caGTTAATCACActacactaggaaatcaagctttcagaaaaaacaacatc
agtcagtcatctacaggttgcatttgcaacaacaaggatgagagttacct
gaatcaagttcaagtccCCAAGACAATTaactaaaacttgaaaacttaaa
atgagacaaaatgaccgacctgcggggggggggtactaggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014016XLOC_014016Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024934-exon-sc0000513-1491911889:207874..208564TCONS_00024934-exon-sc0000513-1491911889:207874..208564Clytia hemisphaericaexon
TCONS_00024934-exon-sc0000513-1510915933:207874..208564TCONS_00024934-exon-sc0000513-1510915933:207874..208564Clytia hemisphaericaexon
TCONS_00024934-exon-sc0000513-1575043694:207874..208564TCONS_00024934-exon-sc0000513-1575043694:207874..208564Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000513supercontigsc0000513:207874..208564 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.6946	0.503288	0.778246	0.684228	1.01328	0.633563	0.380447	0.449754	0.436896	0.768637	0.226317	0.75586	0.362162	0.0515032	0.259768	0.269201	0.0564766	0.398978	0.470974	0.0838025	0.569487	0.104181	0.253435	0.230289	0.479888	2.20811	0.524367	0.21848	0.428113	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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