TCONS_00024849 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024849
Unique NameTCONS_00024849
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024849 ID=TCONS_00024849|Name=TCONS_00024849|organism=Clytia hemisphaerica|type=transcript|length=474bp
tttttttctttcaaaataggTGTTAAGCTAATCTAATCAGTTCAGCTTGG
GAAGGGGGCCCTATCCCTCGAATTCTCCTCTCCAATAATTCTCCTTCCAA
CCAACAGAAATTTCCTCATTCGGGGCAATGGTCATGGTCTGCATGATTAA
TGTTCGCAAACTGTCCCTTCTGCAAGCGAGCCCCCATTCGACTACCCAGC
TACCTGTGCTTTTTAATGCGAGTTATCTGCATCTCACCCCTGGTTACAAT
CACCCCTTTTTTCTTCAGTGCCCAAAGGAAGATTCTGATTTTCAGCCGTC
ATCGGCAGCAGCAGAGCTTCAATAGGTGGAGGCACCACCTTCTTAGCAAT
TTTGGTGTTACCTCTGAGTCCATTTAAACCCCTTTCACAGACTGGACGGC
ATTATTAAGTGGCCAAGCGGTTCATGGTAGTCCTCAATGTTAACCTTTTG
ATTTTAGCCAGACTGTTTTTCCCA
Run BLAST on NCBI

transcript from alignment at sc0000511:216356..216829

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024849 ID=TCONS_00024849|Name=TCONS_00024849|organism=Clytia hemisphaerica|type=transcript|length=474bp|location=Sequence derived from alignment at sc0000511:216356..216829 (Clytia hemisphaerica)
TGGGAAAAACAGTCTGGCTAAAATCAAAAGGTTAACATTGAGGACTACCA
TGAACCGCTTGGCCACTTAATAATGCCGTCCAGTCTGTGAAAGGGGTTTA
AATGGACTCAGAGGTAACACCAAAATTGCTAAGAAGGTGGTGCCTCCACC
TATTGAAGCTCTGCTGCTGCCGATGACGGCTGAAAATCAGAATCTTCCTT
TGGGCACTGAAGAAAAAAGGGGTGATTGTAACCAGGGGTGAGATGCAGAT
AACTCGCATTAAAAAGCACAGGTAGCTGGGTAGTCGAATGGGGGCTCGCT
TGCAGAAGGGACAGTTTGCGAACATTAATCATGCAGACCATGACCATTGC
CCCGAATGAGGAAATTTCTGTTGGTTGGAAGGAGAATTATTGGAGAGGAG
AATTCGAGGGATAGGGCCCCCTTCCCAAGCTGAACTGATTAGATTAGCTT
AACAcctattttgaaagaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013972XLOC_013972Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024849-exon-sc0000511-1491911889:216356..216829TCONS_00024849-exon-sc0000511-1491911889:216356..216829Clytia hemisphaericaexon
TCONS_00024849-exon-sc0000511-1510915933:216356..216829TCONS_00024849-exon-sc0000511-1510915933:216356..216829Clytia hemisphaericaexon
TCONS_00024849-exon-sc0000511-1575043694:216356..216829TCONS_00024849-exon-sc0000511-1575043694:216356..216829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000511supercontigsc0000511:216356..216829 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.84027	3.12439	1.32432	0.650061	3.00356	2.18121	10.2812	8.3879	7.5933	17.7471	9.08264	4.82163	8.98006	10.3304	11.6553	13.4249	14.777	10.3172	4.0878	5.98665	5.04753	7.71613	3.19675	1.77006	6.71568	8.59501	9.95916	6.81315	4.84652	4.14308
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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