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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024843 ID=TCONS_00024843|Name=TCONS_00024843|organism=Clytia hemisphaerica|type=transcript|length=2578bp
caaaatcAGTCAATCAGTCCCTAAACTTAAGTGTGTCCATACCTGGTGAA
GCAATTCATGTTTCGGTTTTTTGGTTGATAATTAAAATCTTGTCCCTAAA
CTTTTATGTCAAAATCTAAAGTGTAGTGACTCACGTGTTAATTTTTGTTT
GGAGATAAGAACACCCCTTTTTATAAGTATTTATAGGATGTCGGTGCTAT
cagaattgaataaaaaaacagctTTTGATAAACTTGGCCACATCCATGAT
TGGTGCGTGTGATTATTTGTGTTTTGATTTGAACAAAAAGCAAGTCGAAT
TTATGATAAAGACTTTCAGAAAATTTCGATAAACATTAAGGCTAGGTCAT
TTGCTGGTGTATCTAGGGTTATATTTTACAAAGCATCCTCCGGAAAAGGG
ACATGATTTTTGGGACAAGGCCAAATTTTGTTATCTTGCAGTACCTTCAA
TATTCAATAGCTACTAAAGCACCtctttgaagttttcttttgatgTAAAC
GAGAAATCAAACTTCACTTCCCGGTACTGCCCTCTTCGACAGACAGAAGA
GTAATCAAGATATGCGAAAAAATGACGCTACCTTTGTAATAAAATGACCC
TGATTGGGGGTAACCTCAaagtttgcattttttttcaaaatcacttCATG
AAATATTACGAGGGACAGCCAAAGTTAGTATGTGATACACACTAAGTAAA
CTACACTACTAAACACGAACCTCTTCTTTTCTACTGCACTTATCCCTCTC
AACCACCTCGATTTATTTAAGACACCCACAACTCCCACATTTCCCTCACT
AGACCCTCTCAATGCTCTCACTACGCTCACAAGACActatatctatatat
taatagccgtagtctgcatgtcactttgtttgtttgtttgtttgtttgtc
tgtttGTCTGTCTATCTGTCCGTGTGTTACTTTTGTTttcgcaatgtttt
tgttgatagagcctggtttaagTTTTCACTAAGGCTAAAAGAGCGCAACT
TAAAATTGTCTTTGTTATTCTTGAATTTGATAAAAACATTCACATTATTC
CATTTTATTCGCATGGTATTTGTTGCCATTGCCCTAAAATCATCAGGTTT
TTAATTTCACTCCTCTTTCTTGAcaccaaagtttttcaaattatttagag
TTTGACAGCAAAAATAAAGCTGTTGCAAAAAAGTTGCAAaagagtcgtct
cggacgacgccggaaCGGTTAGTAGTGTTTACACTTGTATATTAAATTAG
CCGTCCCACGTAAAAGTACtccaaaaaaccctttccaTTTTGTTTTCCAA
GTTGTTCAAAAAAGAGCACACCTCAAAGGAtcgattttcatatttttggg
gtttttgcAGTTTTTGCGAACCATGCCTCGATATTGACCTTTTATTTGAC
GTCTAAATCAATGAAACCATGATTGCTCCAAAACATATCACCAACAAATC
ATTAAGGGTACGTCACTTTTGAACCCACCCCCTTCGTATTAGACTTCTTA
TGGAAATACAATGAACCTTTGTTTCCCATAACACCAGTCTAACCAAAAAT
CTTCTtcaaagataaacaaaagaattgttTCTTGAATATTATTTACTTTT
TCGACTTGATGATCTTCAAACAGTTCGTTCTAACTCTATTTCTGTGGATT
TCTGTAGTTAAAGAAAAGACTCACAGTCTGATTTTTCTGTTGCAATCTTT
TTTTCAACAGTGTATTAACTAATTCTTGAACATAGTAGTTTCCAAAGAGT
TCGTTCCAACTCCATTTCTGTGGATTTCTGTGGTTAGAGAAAAGACTCAC
AGTCTGATTTTTCTGTTACAATCTTTTTGTTAACAGTGTATTAACTAATT
CTCGAACATGGTAGTTTCCAAAGAGTTCGTTCCAACTCCATTTCTGTGGA
TTTCTGTGGTTAGAGAAAAGACTCACAGTCTGATGTTTCTGTTACAATCT
TTTTGTCAACAGTTGCATTTAACTAATTCTCGAACATGGTAGTTTTCAAA
GAGTTCGTTCCAACTCAATTTCTGTGGATTTCTGTGGTTAGAGAAAGGAC
TCACAGTCTGATTTTTCTGTTGCAATCTTTTTGTCAACAGTGTATTAACT
AATTCTTGAACATGGTAGTTTCCAAAGAGTTCGTTCCAACTCCATTTCTG
TAGATTTCTGTGGTATGCTATCAGTCATGGTTAAAGAAGTACTCTTATTT
AGTTATGCACAAAGTCGTGCCAATCAATTCTGATTTTATTTTCCACATTC
TTACAATCTCGTAAtcctaaaatatttctttctttgGTTAAAGAAagcac
ttttttcatttttatctctATTTTGACCAATATTTGCCAACAATACCAAC
CATTCTTTACACAAATTCCATTAAATCTGCACCGAACTCGTGATTTTAAA
GGACTGGTCAAGCTTAAGAGAAATATTTAAATGATTTAATACCCCAACAG
CTACTTTTGAAAGTTAAATTCAACTAAGTTTTTGGTATAGCTCCTTTCAT
AGTTCCACGGGATAAGAGATAGTTACCATATTTTATCATGAcgaattttt
tatgtcaaaaaatctttaaaatcgaaat Run BLAST on NCBI transcript from alignment at sc0000511:116791..119368 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024843 ID=TCONS_00024843|Name=TCONS_00024843|organism=Clytia hemisphaerica|type=transcript|length=2578bp|location=Sequence derived from alignment at sc0000511:116791..119368 (Clytia hemisphaerica)
atttcgattttaaagattttttgacataaaaaattcgTCATGATAAAATA
TGGTAACTATCTCTTATCCCGTGGAACTATGAAAGGAGCTATACCAAAAA
CTTAGTTGAATTTAACTTTCAAAAGTAGCTGTTGGGGTATTAAATCATTT
AAATATTTCTCTTAAGCTTGACCAGTCCTTTAAAATCACGAGTTCGGTGC
AGATTTAATGGAATTTGTGTAAAGAATGGTTGGTATTGTTGGCAAATATT
GGTCAAAATagagataaaaatgaaaaaagtgctTTCTTTAACcaaagaaa
gaaatattttaggaTTACGAGATTGTAAGAATGTGGAAAATAAAATCAGA
ATTGATTGGCACGACTTTGTGCATAACTAAATAAGAGTACTTCTTTAACC
ATGACTGATAGCATACCACAGAAATCTACAGAAATGGAGTTGGAACGAAC
TCTTTGGAAACTACCATGTTCAAGAATTAGTTAATACACTGTTGACAAAA
AGATTGCAACAGAAAAATCAGACTGTGAGTCCTTTCTCTAACCACAGAAA
TCCACAGAAATTGAGTTGGAACGAACTCTTTGAAAACTACCATGTTCGAG
AATTAGTTAAATGCAACTGTTGACAAAAAGATTGTAACAGAAACATCAGA
CTGTGAGTCTTTTCTCTAACCACAGAAATCCACAGAAATGGAGTTGGAAC
GAACTCTTTGGAAACTACCATGTTCGAGAATTAGTTAATACACTGTTAAC
AAAAAGATTGTAACAGAAAAATCAGACTGTGAGTCTTTTCTCTAACCACA
GAAATCCACAGAAATGGAGTTGGAACGAACTCTTTGGAAACTACTATGTT
CAAGAATTAGTTAATACACTGTTGAAAAAAAGATTGCAACAGAAAAATCA
GACTGTGAGTCTTTTCTTTAACTACAGAAATCCACAGAAATAGAGTTAGA
ACGAACTGTTTGAAGATCATCAAGTCGAAAAAGTAAATAATATTCAAGAa
acaattcttttgtttatctttgaAGAAGATTTTTGGTTAGACTGGTGTTA
TGGGAAACAAAGGTTCATTGTATTTCCATAAGAAGTCTAATACGAAGGGG
GTGGGTTCAAAAGTGACGTACCCTTAATGATTTGTTGGTGATATGTTTTG
GAGCAATCATGGTTTCATTGATTTAGACGTCAAATAAAAGGTCAATATCG
AGGCATGGTTCGCAAAAACTgcaaaaaccccaaaaatatgaaaatcgaTC
CTTTGAGGTGTGCTCTTTTTTGAACAACTTGGAAAACAAAAtggaaaggg
ttttttggaGTACTTTTACGTGGGACGGCTAATTTAATATACAAGTGTAA
ACACTACTAACCGttccggcgtcgtccgagacgactcttTTGCAACTTTT
TTGCAACAGCTTTATTTTTGCTGTCAAActctaaataatttgaaaaactt
tggtgTCAAGAAAGAGGAGTGAAATTAAAAACCTGATGATTTTAGGGCAA
TGGCAACAAATACCATGCGAATAAAATGGAATAATGTGAATGTTTTTATC
AAATTCAAGAATAACAAAGACAATTTTAAGTTGCGCTCTTTTAGCCTTAG
TGAAAActtaaaccaggctctatcaacaaaaacattgcgaaAACAAAAGT
AACACACGGACAGATAGACAGACaaacagacaaacaaacaaacaaacaaa
caaagtgacatgcagactacggctattaatatatagatatagTGTCTTGT
GAGCGTAGTGAGAGCATTGAGAGGGTCTAGTGAGGGAAATGTGGGAGTTG
TGGGTGTCTTAAATAAATCGAGGTGGTTGAGAGGGATAAGTGCAGTAGAA
AAGAAGAGGTTCGTGTTTAGTAGTGTAGTTTACTTAGTGTGTATCACATA
CTAACTTTGGCTGTCCCTCGTAATATTTCATGaagtgattttgaaaaaaa
atgcaaacttTGAGGTTACCCCCAATCAGGGTCATTTTATTACAAAGGTA
GCGTCATTTTTTCGCATATCTTGATTACTCTTCTGTCTGTCGAAGAGGGC
AGTACCGGGAAGTGAAGTTTGATTTCTCGTTTAcatcaaaagaaaacttc
aaagaGGTGCTTTAGTAGCTATTGAATATTGAAGGTACTGCAAGATAACA
AAATTTGGCCTTGTCCCAAAAATCATGTCCCTTTTCCGGAGGATGCTTTG
TAAAATATAACCCTAGATACACCAGCAAATGACCTAGCCTTAATGTTTAT
CGAAATTTTCTGAAAGTCTTTATCATAAATTCGACTTGCTTTTTGTTCAA
ATCAAAACACAAATAATCACACGCACCAATCATGGATGTGGCCAAGTTTA
TCAAAagctgtttttttattcaattctgATAGCACCGACATCCTATAAAT
ACTTATAAAAAGGGGTGTTCTTATCTCCAAACAAAAATTAACACGTGAGT
CACTACACTTTAGATTTTGACATAAAAGTTTAGGGACAAGATTTTAATTA
TCAACCAAAAAACCGAAACATGAATTGCTTCACCAGGTATGGACACACTT
AAGTTTAGGGACTGATTGACTgattttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024843-exon-sc0000511-1491911889:116791..119368 | TCONS_00024843-exon-sc0000511-1491911889:116791..119368 | Clytia hemisphaerica | exon |
| TCONS_00024843-exon-sc0000511-1510915933:116791..119368 | TCONS_00024843-exon-sc0000511-1510915933:116791..119368 | Clytia hemisphaerica | exon |
| TCONS_00024843-exon-sc0000511-1575043694:116791..119368 | TCONS_00024843-exon-sc0000511-1575043694:116791..119368 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000511 | supercontig | sc0000511:116791..119368 . |
Blast
The following BLAST results are available for this feature:
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