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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024742 ID=TCONS_00024742|Name=TCONS_00024742|organism=Clytia hemisphaerica|type=transcript|length=3484bpRun BLAST on NCBI protein sequence of TCONS_00024742-protein >TCONS_00024742-protein ID=TCONS_00024742-protein|Name=TCONS_00024742-protein|organism=Clytia hemisphaerica|type=polypeptide|length=745bp MNLSDSPSSSDDITSVIRMVKDYKRFVSKSSSKNDTGFNLDLFSPKKDTSRun BLAST on NCBI transcript from alignment at sc0000509:171314..194437- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024742 ID=TCONS_00024742|Name=TCONS_00024742|organism=Clytia hemisphaerica|type=transcript|length=23124bp|location=Sequence derived from alignment at sc0000509:171314..194437- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000509:171314..194437- >TCONS_00024742 ID=TCONS_00024742|Name=TCONS_00024742|organism=Clytia hemisphaerica|type=CDS|length=46998bp|location=Sequence derived from alignment at sc0000509:171314..194437- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024742 vs. Swiss-Prot (Human)
Match: MD1L1 (Mitotic spindle assembly checkpoint protein MAD1 OS=Homo sapiens GN=MAD1L1 PE=1 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 2.214e-31 Identity = 173/702 (24.64%), Postives = 336/702 (47.86%), Query Frame = 2
Query: 275 ERAEMLATKSKVVRLENELKQYEFEDKKKQIESETQRRLNSSKHAADVEEADQLRRKFKQV----LGDKESFASELEHWKKKYEGLN------RE----FSEAKQTWSTEKTFLTDQLNECKSSFQDESINMKE-KSQRQSMELMTYKSKLDEVDVQLRNFKSRYEEANRLCCDYSELKYRCQSSEQKVKALEERLSQRDETTLINEKCRKELSNYREMERQNKLLMDENQLLKDGEQNMLILEERXXXXXXXXXXSESTSQRLQKCQIENEVLKEKLQN-------INQRPRSEGELTQMISELQKTNLNNTERNSELEVSVSILDATLLRKLDELKDVEQSKLQIESANSQLTEKYTKLQRRLTLVSGERDGLRRVLSSYEVEDGRA-----IKLKIEEAEHRINTLQKQYDELSD---------NHNKLREENYQLKRKATEHDASTMNISETIQLQES---KKQLNELRKEMDQLREEKETVDMLLRKRELQGEFNPMKTRVLHLKNNLM----QRAYDDYXXXXXXXXXXXXXXXXXVMKLQQENEQTSFIDETMNMSKII-----------KTSKPMVEIQRLYEEEKKNNQRLLAGFKKKVKDFREAVYNIFGFSFKQMNDRDGFYRVQSIYSNRPDDFFLFTCAKNKEGVTEAGMAETEYAREWRPLFNDYIQKGDSIPAFLSAVTLDLFSQTT 2218
ERAE + +KS ++++E E Q E K+ ++E E ++ + +V+ +L + +Q+ G +E +LE ++ + L+ RE ++A +T + L +++E + S D+ + +K +S++Q ++ +++D+Q + +EAN+ + + EQ++K LE++LS +++ I + + EL +ER+ K L +E+ L++ + +L+E L L++KL + E + L ++ENE L KLQ+ + R+ +L++ + ELQ+ L ++NS + S L+ + +EL+ V L+ +LQ+R+ L++ ERDG+R +L SY+ E A + ++ EAE + + E+ K R + +++ K + +S+ S +E+ + ++ EL E +L EEK ++ L +R LQG+++ +T+VLH+ N QR +D+ +LQ E E+ + M + +SK + E+++ E + NQRL F+ K+++FR+A Y + G+ + YR+ S+Y+ P D +F A + G ++ + ETE++ L ++++ DSIPAFLS++TL+LFS+ T
Sbjct: 53 ERAEQIRSKSHLIQVEREKMQMELSHKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETINA----LKGRISELQWSVMDQEMRVKRLESEKQELQ--------EQLDLQ----HKKCQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREESAHLREMRETNGLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQSWERLDQTMGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTPAEYSPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHS------------------QLQAECERLRGLLRAMERGGTVPADLEAAAASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQ--YRLTSLYAEHPGDCLIFK-ATSPSG-SKMQLLETEFSHTVGELIEVHLRRQDSIPAFLSSLTLELFSRQT 716 The following BLAST results are available for this feature:
BLAST of TCONS_00024742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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