TCONS_00024748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024748
Unique NameTCONS_00024748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024748 ID=TCONS_00024748|Name=TCONS_00024748|organism=Clytia hemisphaerica|type=transcript|length=682bp
ttCAGAAACATCCGGAGCAAAAAGTGCCGTTTTTTTCGTGCTCCAAAAAC
CGGAAGATTTTCAGCGATTGCTCTGCACCGGAACTCCGGGAGCTGTATTA
AGAATCACTTGCTCCGGTCCGGAAGCTCCAGAAGAGCTCCATGACTTTCC
AGAGagaaaaattgtgttttttagCTGCTCCGGAAAACTGTGGAAGTTTC
CGGAGCGTCGGGAGGGTCCTAATCAAACACCAAAttaattgaacacaatc
gattGCAACTACTTTTTTTTGGCTCAAAGTCAATCAGCAATCCCGACCTT
CCTCAGTTCTTATTGCttctatctctaaagaagagtgtcaaaattagaag
agagATGTCGACATTACATTAGACCAACTTCTTATGGTATATATTTAAAG
TAACATCAGGCCCTACAGTAAGGCCCATTCTCGCTTATAAAGATACAATG
ATAGTCATATAAAAACCTTACATGATTGAactataaaaaaagtaaaagaa
agcaTTATAGAAGAGAATTTAAGGTATATACCGTAAATTgttctaatgtc
gacacccctcctctaattcagacaccctttttatcagctgaagttgatag
aaaggttgaaactgtttttctttgcttattggtcagagaggaataatcct
ttttcaatcagttaTTGAAGCTtttatattat
Run BLAST on NCBI

transcript from alignment at sc0000509:37094..37775

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024748 ID=TCONS_00024748|Name=TCONS_00024748|organism=Clytia hemisphaerica|type=transcript|length=682bp|location=Sequence derived from alignment at sc0000509:37094..37775 (Clytia hemisphaerica)
ataatataaaAGCTTCAAtaactgattgaaaaaggattattcctctctga
ccaataagcaaagaaaaacagtttcaacctttctatcaacttcagctgat
aaaaagggtgtctgaattagaggaggggtgtcgacattagaacAATTTAC
GGTATATACCTTAAATTCTCTTCTATAAtgctttcttttactttttttat
agtTCAATCATGTAAGGTTTTTATATGACTATCATTGTATCTTTATAAGC
GAGAATGGGCCTTACTGTAGGGCCTGATGTTACTTTAAATATATACCATA
AGAAGTTGGTCTAATGTAATGTCGACATctctcttctaattttgacactc
ttctttagagatagaaGCAATAAGAACTGAGGAAGGTCGGGATTGCTGAT
TGACTTTGAGCCAAAAAAAAGTAGTTGCaatcgattgtgttcaattaaTT
TGGTGTTTGATTAGGACCCTCCCGACGCTCCGGAAACTTCCACAGTTTTC
CGGAGCAGctaaaaaacacaatttttctCTCTGGAAAGTCATGGAGCTCT
TCTGGAGCTTCCGGACCGGAGCAAGTGATTCTTAATACAGCTCCCGGAGT
TCCGGTGCAGAGCAATCGCTGAAAATCTTCCGGTTTTTGGAGCACGAAAA
AAACGGCACTTTTTGCTCCGGATGTTTCTGaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013903XLOC_013903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024748-exon-sc0000509-1491911889:37094..37775TCONS_00024748-exon-sc0000509-1491911889:37094..37775Clytia hemisphaericaexon
TCONS_00024748-exon-sc0000509-1510915933:37094..37775TCONS_00024748-exon-sc0000509-1510915933:37094..37775Clytia hemisphaericaexon
TCONS_00024748-exon-sc0000509-1575043694:37094..37775TCONS_00024748-exon-sc0000509-1575043694:37094..37775Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000509supercontigsc0000509:37094..37775 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.303553	0.219427	0.510632	0.332345	0.10115	0.399649	0.289295	0.451391	0.505648	0.548035	0.607927	0.399628	0.299304	0.41444	0.425908	0.319945	0.506759	0.288562	0.55813	0.584043	0.507639	0.212236	0.344728	0.312747	0	0.431229	0.205696	0.330051	0.749255	0.424096
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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