TCONS_00024685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024685
Unique NameTCONS_00024685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1185

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024685 ID=TCONS_00024685|Name=TCONS_00024685|organism=Clytia hemisphaerica|type=transcript|length=1185bp
ttttcagagtaaaacaaaaaaaaaaggttgaaaaaaaataaaaatgtgat
ACAATAAGATCTACAATGAAGAAATGGACAAAGTTGGTGAAGAAACGTTA
AGTCATGCCACATTTGGCTTGATTGCCTTACTTCAGGAAAAGCCATACGT
TTGTGACATCAAATTCAAACAGAATGAAGCCGTGTCAAAAAACATGCTCA
CTGTTTGGGAAGAGGGCAACCAATGTCAATTACCATCTGACTTGAGACAA
TTTTATGAAACAATGAATGGTCTACTGATTCAGtggaaaatcaaattcaa
tgacgatgaaattgaaattggcTTGATCGAGATTAATCCCATCGAATGTT
TGAATGGTTTGGCTATGCGAATGAACCGTAACGATTTGACTCTACAAGAT
TTTCAGCTGCCCAAAGATATCACAATGGACATAAAGGTGAATCAAAGACC
AATTCCAAACTTCAATCAGAAGATCATGGAAATTAGCTCAGACGGGCAAC
ATGGAAAAGTTTGCCTGCTTTTCAAAGaaaatggcaATATTGAGGTTTGG
CTGATTGATTTATCATTGCAATGGCATTACCTTGCACCGTCATTCAGTCA
TTACTACCGAATGATGGTCACACACTTGGGAATACGTGGATGGCAATTCC
TTTACACCGAATATGGACTCACTCCTGAGGCGAAGCAATGGTTCAGTTTC
TGCCTTCCACATCGACTAAAAGAAGACATATTCCAAAAAGAAAACGACca
caaaccatcaaaaacaacaaataaagTTGACTTTGCATCACTGTTCAAAC
AGAAAAAGAAGACCAAGGACCCCAGTACTGGCACTGCGTCCTCAAACGAG
CAGAATTTAAACAAGCGGAAAAAACAGCCTGGAAACCTGAAGCCAAGGAC
AACAGCTAAACCTCCGGCTAAATTAAACAAAGCTTCTTTTAAAAACCCAT
GAGTCGATTTTCGGGTGGAAGGCGTTTGTTCAAGATTGATATTAGCGTTG
TTATATCTTTGAAGCATAATCTGAGGTttacattgggcttttccagaaat
agtccgcccccccccctgttgaagATATCAGATATCTaaggggttaacga
tttttgttcaaaagtggatatccagggggttaaatatctacaagggagcg
gatatccaggggtaaagtgtcttttcaagtaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00024685-protein

>TCONS_00024685-protein ID=TCONS_00024685-protein|Name=TCONS_00024685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MDKVGEETLSHATFGLIALLQEKPYVCDIKFKQNEAVSKNMLTVWEEGNQ
CQLPSDLRQFYETMNGLLIQWKIKFNDDEIEIGLIEINPIECLNGLAMRM
NRNDLTLQDFQLPKDITMDIKVNQRPIPNFNQKIMEISSDGQHGKVCLLF
KENGNIEVWLIDLSLQWHYLAPSFSHYYRMMVTHLGIRGWQFLYTEYGLT
PEAKQWFSFCLPHRLKEDIFQKENDHKPSKTTNKVDFASLFKQKKKTKDP
STGTASSNEQNLNKRKKQPGNLKPRTTAKPPAKLNKASFKNP
Run BLAST on NCBI

transcript from alignment at sc0000507:21611..32093+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024685 ID=TCONS_00024685|Name=TCONS_00024685|organism=Clytia hemisphaerica|type=transcript|length=10483bp|location=Sequence derived from alignment at sc0000507:21611..32093+ (Clytia hemisphaerica)
ttttcagagtaaaacaaaaaaaaaaggttgaaaaaaaataaaaatgtgat
ACAATAAGATCTACAATGAAGAAATGGACAAAGTTGGTGAAGAAACGTTA
AGTCATGCCACATTTGGCTTGATTGCCTTACTTCGTAAGTGCGGGCCTTC
CACGCCTTCTAAAATTTCTGACTAATAGACTCAGATCAAGGGATCTTACC
TGGAGAGAGTGGAAGATAAAGTGAAATGTGCACTGTAGTACACTGTCTTA
GCCCAAAAAAGATACAATTTTCCATAAAAAgtagtcaaaatttcaagagt
ttttattttttaaatctcctATCGCGAGGGCCGTGTAAATGAGTCGATTT
ATTGTATTGTTGTTGGCATTTTTtccaaactttctttttatgCGATCTCT
TCTCATGACACTTTCTTACAACAGTCTTTTAATAAAAGGTTGTTTGTTAT
CTCAACTTTCACATGATTATCTAGAGGAAAAGCCATACGTTTGTGACATC
AAATTCAAACAGAATGAAGCCGTGTCAAAAAACATGCTCACTGTTTGGGA
AGAGGTTTGAACACTATTCctaattatttgtttttttcgttttacGACTA
AACTTCTTCAAGTTTATGATGACCNTTATTCCTAATTATTTGTTCTTTCA
TTTTACGACTAAACTTCTTCAAGTTTATGATGACCTACaggtgtttttat
aagaaattatataagaacataaggcctcgatgtcaaaaatattaacaaca
acttgagaacattttatgactctaaaacaccacaTTTCTTCAGAAAATGG
ACTAAAATACTCAGAAATGGCGAGAACATTTTTTGGCCTAATTAaccttt
aaaaagtttttaagaacatccgaaggctttaaaaaatttggattttctta
taaaaaaacgtgtaacaagAATGATAATTAAAGAgtccccccccccagcg
gaccttcatttgacgcaatcacgcaatttttttcccaaattcatgcaatt
tttgttcacgcaaggccttccaattcacgcattcacgcaattctttttaa
attttaacgcattcacgcaaacggTTGGGGGAGCCCTATTAAAGGTACAT
TGCATGCTCTTttaataaagccttaaaatgttcctaaaatgtttttattt
ttactattttgtgaatattgaTGTTTAGTTTACCATATGAATGAACTTAA
ACGGTTTAATGCTTCTTAATTTCTGTACCGAGAATGAGTTTACTGTTATG
GGATCAATGTTTCAACTTCCAAACGCCCTGAAATGCACCTGGCAACATTT
ACGTTCCAAACACTGGCACCAAATCGATCACGTTATCGCCAACACATCGG
CAAAGCATAGCATCAATGTCACTAAAGTCGATATCCGTGCTGACTGTTTC
ACCGACCATAGACTTTTAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGAA
GAAAAGGTAAAAAACCGCCTCGAAAACCTTTCTTGAACATGAACGCAGAT
AAAATAAAGCAACTACAAGATTACCTCAATGACAACCTCGTGAGTAGACC
ATGTGACTGGAACTCCTTAAAAACTACTTTACAATCCGCCACCGAACTGA
TCTCTGAAAAAGCAAAGAAAGTATCTCACGATTGGTTTGATGATAATGAT
GTGCAGATTCTTGCTCTTCTAAGAAACAAACATCTTAATAGAAACGAGCT
TCAGAAACGTATTcgtcaaatgaaaaatgattggTTTGTTGAAAAAGCTA
ATCAGATGGAGAGGTTTTATCTCGAGAACAATATTAGAGACTTTTATGCG
ACTTTACGTGAAATATACGGTCCTAAATCCAAGTCTACTAATCAGATACG
CTCCAAGGACGGCACGCTTTTGGTTACCGCAACTCAAATCAAAAGAAGAT
GGGTCGAGCACTTCTCTGAATTACTTAACCTCAGATCGGACACTGACGAA
TCCGTTCTGAATGAAGTTCGACAGCTTCCTATCGACAATTCACTTGCTGT
ACCAATTACTCGAGATGAAATTGATAAGGCACTGAAAAGCACAAAATTAA
GAAAAAGCCCTGGTCCAGATGGGATCCTTCCGGAAATCATTGTTTTTGGA
GGTGAAGCACTTCGAGAATACCTATTGGAGATCTTCAATATCCTTTGGGA
GAATGACAACATTCCAGCAGAATTGATCAACCCTAACATATGTATCCTCT
TCTAAAAAGGCGATAGGAGTGAGTGTGGTAACTACCGTGGAATATCACTA
TTGAGTACAGTGGGAAAAGTCATCGCAGACATTGTTTTACAAAGAATTCA
AAACCTGCTTCCTAATGTATACCCTGAATCGCAATACGGCTACAGAAGCG
GTAGAGGAACAGTCGATGGTATATTCACCCTACGTCAACTGATGGAAAAA
ACCCGCGAACAGCAATGCCACCTCTACATCGCTTTCATCGATTTCACCAA
AGCCTTCGATACCGTTGATCGTCCCCTACTCTTCGCTATCCTTGAAAAAA
TTGGTTGTCCTCAGAAACTTGTCAGCTTGATCAGAATGCTTTATACGAAT
GTTGAAGCCCGCCTCATAATCGATGGTTAAATGTCAAACCTTTTCAATTA
CAACAGTGGTGTCAAACAAGGTTAAGTAAGCTGGCTCCCACTTTATACGG
TATCTACGCTGCTATTCTACTTTGGGTTGCCTACAAAGACATCAAACACG
AACACTCAGTACTGATCAGATTCCGAACTGATGGCAAATTTTTCGACTTG
AGAAGACTTAAAGCAAAATCAAAGGTCTTCCTTGAGTATCTTCGTGAAGC
TCAATACGCCGACGATATTGCCATCGCTAGCAATACAGGTCCTGGATTGC
AAACGCTTCTTACATCCTACAATCTCACCTCTATTCGTTTCGGACTTATG
ATAAATGTTAAGAAGACAGAAACCATGTGCATCGGTCCTGAAATCACATT
TTTTGTCAACGAATCACCGTTAAAGAATGTCAACCGCTTCAAATACCTTG
GAAGTTTCGTTTCATCTGATTGCACGCTGAGGGAGGAAATTACAGCACGC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATGGCGCTCTGG
TACAAAGAAAGTATGTACAAAGTTAAATGAAAAACGTATTCAGAGCTATG
aacgaagaaaacaaaaaagaagataGTTTTCATAGTATTTACCCTTTTGT
AGTAGACATATGTATATAAACTTGTTAGTATTTTACTCGACACCGAGGCT
AggcatattattattattatttaccATAAAATTTGGTGTTAAGAGTTTGC
AAAGCCTgaaagtgttcttaacttgcaCTTGCATTTAATATTTagtccat
cgaagccttatgttcttataattttCTTTAGTAAGAAAAGGTTCAGCTAA
CATATTAATCTTGTCTTTACCTCATGCTTTTTTCAGGGCAACCAATGTCA
ATTACCATCTGACTTGAGACAATTTTATGAAACAATGAATGGTCTACTGA
TTCAGtggaaaatcaaattcaatggTACGTGGTGCTACCCTTCCCCTAGT
GTTTCACTTGGTTTTGACTTCTCAAACTGTCATAATGCTTTGAACAAAGC
AGAAGAATAACTCACCCCAAATTAGTTCGAGTTAATGAAATCTCGAGTTA
AGGATTAGGCATTATTGACTGAAAGGACGAGAAagcttgtttgagttaag
gaaaaaATTCTGGTTGTAGATGTTCGAgataaagagactctactgtatat
tATCTTGAATTAAAATTTAAATCATAAACAAGAATGAAATCCCTGGaata
gtttttgtttttgttgtaagGGATGCGAATCAGACTGGAAGAACACGCTA
ATCATGTTTTAAATGTGGTGTGTGATCCCTTTTATTCAACTTTTGTCACC
AGATCTGATTAAATATCAAACTTATGAACTCGTGTAGTACCATAATATCC
TTCCTATGCTAAAATTTTAGTGACATCAACGATTCCCACCTCAAAAGAGT
TGATGTGATTTTGGGGCCGATATGCATCCCTTAAATCTAAGCAAATCAGA
GGGATACTGGCAGCCTATGTGGAGAGTTTGTTCTAACAAGCCCAAGTCAA
CTTCTGTATTCTTATTTCGCCAAACTTCCTGAATTTTCAATAAGTTATAG
TTTTATTTTGCCAGacgatgaaattgaaattggcTTGATCGAGATTAATC
CCATCGAATGTTTGAATGGTTTGGCTATGCGAATGAACCGTAACGATTTG
ACTCTACAAGATTTTCAGCTGCCCAAAGATATCACAATGGACATAAAGGG
TTTGATACTAAATTATTTCCCCACCTCAAATTTCTCatttgaattttatt
agcttaagggaacttattttggcgagaactacttttggcgaattcggcga
atttagacaaaattcgccaaaattagtctccgccaaaattgaatattata
ctcacttgccaaaataagttctcgccaaaattaaattttttggtattttg
cctaaataGCTTCTTGAGCTcacaaaaaaagcttcaaataaggcaaaata
gtaCAGATTTTATGCTGTCAATCggcaaaataagttctcgctaaaattaa
aaattttcagaatttattaCTTAAAAAGCACAAActtatattattattaa
tttctaAATACAGTAGTAATCGTTAGAATTTCTTGATATATCCTTTGAAC
GTTTGAAGGAATGAAGTAAGGAAGGTCACTTTGTGTTTGATTGCATTAAC
CAGTTTTAACCAGTATGGCcgagtttttggacctaccccggtggggtgga
ggtcctataaattcacctctgtccgtccgtccgttcgttaccagcttttc
tcgagattgaatcataggaatcNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAAaacggtggtggccaaaatgtgacggagcccgat
tttcgaaaacaaatttttttgggcaaatttgggccaaaaaacggctaaaa
aacgggttttttggactctgtgaaaaattggatcattaattttttctgat
tttttgaatgaaagtagggtaccatcataggtaaaagatggctcaagcag
atctttgcaaaaaaatttatttggcttaaaaaacgcatgtttatctataa
gaatcactattaataagcatacatcaatgttcttagtcaaattactcaat
ttctttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNactggccaaattcgatatttttttataagcacattatcgattact
taggtattagcttttctcgagattggctctttcattctttatgatttttt
gcacaaagatgcataacaataaaccctcgaatgtgactgagcccgatttt
cgaaaaaaaatgtttttaggcaaatttgggccaaaaaacggcttaaaaaa
gggttttttggacattGTTGAATATtcgatcgttgtttttttctgatttt
ttgcatgaaagtaggtaaaagatgggtcaagcagatttttgtaaaaaaac
tattcagctcaaaaaacgcatctttatctataagaatcactattaataag
catacatcaatgttcttagccaaattactcaattttttgatgaaatagaT
GTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtttctaaacgttttttttataagaaacaaacgactaattttaataaat
cgtcactatttgtgttctgaatgattgtttaacgttcatgctcacgtaga
tatgaattataaatgtgttaaatgcataaccaggtaggtccataaatgTA
TCACTTGTATTGTTTTTAAATCATCTTTTGTTATGTCACCGATTGTGCTA
AGTAACTAGGACCTTTTGTCATTGTTAATCTCAATCAAATATCTAATTAC
CTGTTTATGGCACCGATTGTGCTAGAAATAGCGTCTGCTATTGTGAGCTA
CTTGTAATTTTGGACCTTTTATCTAATTTCTTCTTATATTGGTTTAGTGA
ATCAAAGACCAATTCCAAACTTCAATCAGAAGATCATGGAAATTAGCTCA
GACGGGCAACATGGAAAAGTTTGCCTGCTTTTCAAAGGTATAAGTAGATT
CTTGAATGATTATAGCTTTATggtcaacatgaaaaatatgagcaatctga
tcggctaaaaacgcgtacataaatgctgtttttgtgtttgttgttgtttg
ttaaTGATGTGTTGCTTAAAGGATAAACTTCTGGGCATGGGGCGTTTTTA
CTACAGGGAAGTGCCACATTTTCAACTTCGTGATATATTTTGTGATATAG
AAAGGATGCGCGTCTTTTATGctgaaaaagaagaattaaGAAAATAATTA
TCATACTTTGTGCTTGTGCGGCGCAGTTTTGTGTAAAAGTTGTTTTTGCC
TTTGCTAAAAAAATTATGTACGATTGCTTACTCGAGCCGCACTGACGAGT
CCTTTGGAAAGACGAAACAAACGTCTACTGCGGATAGATATCAACAATAT
TGAGCTGTCTGTTAGCATATAAAAACTAAGAATACTTCAcgcttcagatg
gtgataaaagtatgaaatttggcacagatgatccttagagggtctaaaac
ttaattttattgcttttaattCATTGCTTTTTCTGATTCTGATGTTCAAA
Tttaattaaaagctttaaatcccacagaatactaaaacttagattttgag
atttacaaggcaaatcaaGGCAGCGTTCTCCCTTCAGGAACACAGTAAAC
AACCGActaattttttggatgttttaagccttcctatgtcgtttagaccc
aagcatcagaAGGAACTTCgaattttgacatggattcatgtataaaacac
caaatttggtcaactagttccgttattacgggatttttaggttttgcctg
gaaaggcttatgataaCGTCAAACTTTCAaccttcaaaacttttgatagg
aagattttcaaggcatgctttatacctcgattttcatcaaGCTGGAACCA
TCAGAATTtgaatatttagaaaaatatatttaaaagaataaatctttttt
cagccacctgatgacgtcatctggtaGGTGGCCAGGTtgaaaaatttggt
gttactgtttaaaattaagttttagaccctctaaggatcatctgtgccaa
atttcatgcttttatcaccatctgaagtatttttgtgctaacctCACtac
aacaacattttttcaatagAACTTTTCTAGATATCAGCTTCCATAGAACT
TAGTGTAACAATAATACACATAATATTTTAGTGTCtctttattttttcag
aaaatggcaATATTGAGGTTTGGCTGATTGATTTATCATTGCAATGGCAT
TACCTTGCACCGTCATTCAGTCATTACTACCGAATGATGGTCACACACTT
GGGAATACGTGGATGGCAATTCCTTTACACCGAATATGGACTCACTCCTG
AGGCGAAGGTTTGCAAAGAACATGTGTCCGATTGATTTCTGCTTGTTACT
TTTACGGAAACACAAAAAAGACTAGCCACTAGTTTTTAATCAAACAATAA
AACTTGTGGCAAACGCCTAAATTGTCTTTGGTGCTTCGgtttaaaacatt
acgtcatgaatatcatgaaattAGGTATTGAGAATTTTTCTCGGGATGAA
ACGAATTATACAGCGGAATACGGAAGATATTTTTGCATTTGTCATAGTGT
CAACTGTTACTATAAGCTGTTTTTTCGTCTTAGCAATGGTTCAGTTTCTG
CCTTCCACATCGACTAAAAGAAGACATATTCCAAAAAGAAAACGACcaca
aaccatcaaaaacaacaaataaagTTGACTTTGCATCACTGTTCAAACAG
AAAAAGAAGACCAAGGACCCCAGTACTGGCACTGCGTCCTCAAACGAGCA
GAATTTAAACAAGCGGAAAAAACAGCCTGGAAACCTGAAGCCAAGGACAA
CAGCTAAACCTCCGGCTAAATTAAACAAAGCTTCTTTTAAAAACCCATGA
GTCGATTTTCGGGTGGAAGGCGTTTGTTCAAGATTGATATTAGCGTTGTT
ATATCTTTGAAGCATAATCTGAGGTttacattgggcttttccagaaatag
tccgcccccccccctgttgaagATATCAGATATCTaaggggttaacgatt
tttgttcaaaagtggatatccagggggttaaatatctacaagggagcgga
tatccaggggtaaagtgtcttttcaagtaaaaa

Coding sequence (CDS) from alignment at sc0000507:21611..32093+

>TCONS_00024685 ID=TCONS_00024685|Name=TCONS_00024685|organism=Clytia hemisphaerica|type=CDS|length=6153bp|location=Sequence derived from alignment at sc0000507:21611..32093+ (Clytia hemisphaerica)
ATGGACAAAGTTGGTGAAGAAACGTTAAGTCATGCCACATTTGGCTTGAT
TGCCTTACTTCAGGAAAAGCCATACGTTTGTGACATCAAATTCAAACAGA
ATGAAGCCGTGTCAAAAAACATGCTCACTGTTTGGGAAGAGGGCAACCAA
TGTCAATTACCATCTGACTTGAGACAATTTTATGAAACAATGAATGGTCT
ACTGATTCAGtggaaaatcaaattcaatgacgatgaaattgaaattggcT
TGATCGAGATTAATCCCATCGAATGTTTGAATGGTTTGGCTATGCGAATG
AACCGTAACGATTTGACTCTACAAGATTTTCAGCTGCCCAAAGATATCAC
AATGGACATAAAGGTGAATCAAAGACCAATTCCAAACTTCAATCAGAAGA
TCATGGAAATTAGCTCAGACGGGCAACATGGAAAAGTTTGCCTGCTTTTC
AAAGaaaatggcaATATTGAGGTTTGGCTGATTGATTTATCATTGCAATG
GCATTACCTTGCACCGTCATTCAGTCATTACTACCGAATGATGGTCACAC
ACTTGGGAATACGTGGATGGCAATTCCTTTACACCGAATATGGACTCACT
CCTGAGGCGAAGCAATGGTTCAGTTTCTGCCTTCCACATCGACTAAAAGA
AGACATATTCCAAAAAGAAAACGACcacaaaccatcaaaaacaacaaata
aagTTGACTTTGCATCACTGTTCAAACAGAAAAAGAAGACCAAGGACCCC
AGTACTGGCACTGCGTCCTCAAACGAGCAGAATTTAAACAAGCGGAAAAA
ACAGCCTGGAAACCTGAAGCCAAGGACAACAGCTAAACCTCCGGCTAAAT
TAAACAAAGCTTCTTTTAAAAACCCATGAATGGACAAAGTTGGTGAAGAA
ACGTTAAGTCATGCCACATTTGGCTTGATTGCCTTACTTCAGGAAAAGCC
ATACGTTTGTGACATCAAATTCAAACAGAATGAAGCCGTGTCAAAAAACA
TGCTCACTGTTTGGGAAGAGGGCAACCAATGTCAATTACCATCTGACTTG
AGACAATTTTATGAAACAATGAATGGTCTACTGATTCAGtggaaaatcaa
attcaatgacgatgaaattgaaattggcTTGATCGAGATTAATCCCATCG
AATGTTTGAATGGTTTGGCTATGCGAATGAACCGTAACGATTTGACTCTA
CAAGATTTTCAGCTGCCCAAAGATATCACAATGGACATAAAGGTGAATCA
AAGACCAATTCCAAACTTCAATCAGAAGATCATGGAAATTAGCTCAGACG
GGCAACATGGAAAAGTTTGCCTGCTTTTCAAAGaaaatggcaATATTGAG
GTTTGGCTGATTGATTTATCATTGCAATGGCATTACCTTGCACCGTCATT
CAGTCATTACTACCGAATGATGGTCACACACTTGGGAATACGTGGATGGC
AATTCCTTTACACCGAATATGGACTCACTCCTGAGGCGAAGCAATGGTTC
AGTTTCTGCCTTCCACATCGACTAAAAGAAGACATATTCCAAAAAGAAAA
CGACcacaaaccatcaaaaacaacaaataaagTTGACTTTGCATCACTGT
TCAAACAGAAAAAGAAGACCAAGGACCCCAGTACTGGCACTGCGTCCTCA
AACGAGCAGAATTTAAACAAGCGGAAAAAACAGCCTGGAAACCTGAAGCC
AAGGACAACAGCTAAACCTCCGGCTAAATTAAACAAAGCTTCTTTTAAAA
ACCCATGAATGGACAAAGTTGGTGAAGAAACGTTAAGTCATGCCACATTT
GGCTTGATTGCCTTACTTCAGGAAAAGCCATACGTTTGTGACATCAAATT
CAAACAGAATGAAGCCGTGTCAAAAAACATGCTCACTGTTTGGGAAGAGG
GCAACCAATGTCAATTACCATCTGACTTGAGACAATTTTATGAAACAATG
AATGGTCTACTGATTCAGtggaaaatcaaattcaatgacgatgaaattga
aattggcTTGATCGAGATTAATCCCATCGAATGTTTGAATGGTTTGGCTA
TGCGAATGAACCGTAACGATTTGACTCTACAAGATTTTCAGCTGCCCAAA
GATATCACAATGGACATAAAGGTGAATCAAAGACCAATTCCAAACTTCAA
TCAGAAGATCATGGAAATTAGCTCAGACGGGCAACATGGAAAAGTTTGCC
TGCTTTTCAAAGaaaatggcaATATTGAGGTTTGGCTGATTGATTTATCA
TTGCAATGGCATTACCTTGCACCGTCATTCAGTCATTACTACCGAATGAT
GGTCACACACTTGGGAATACGTGGATGGCAATTCCTTTACACCGAATATG
GACTCACTCCTGAGGCGAAGCAATGGTTCAGTTTCTGCCTTCCACATCGA
CTAAAAGAAGACATATTCCAAAAAGAAAACGACcacaaaccatcaaaaac
aacaaataaagTTGACTTTGCATCACTGTTCAAACAGAAAAAGAAGACCA
AGGACCCCAGTACTGGCACTGCGTCCTCAAACGAGCAGAATTTAAACAAG
CGGAAAAAACAGCCTGGAAACCTGAAGCCAAGGACAACAGCTAAACCTCC
GGCTAAATTAAACAAAGCTTCTTTTAAAAACCCATGAATGGACAAAGTTG
GTGAAGAAACGTTAAGTCATGCCACATTTGGCTTGATTGCCTTACTTCAG
GAAAAGCCATACGTTTGTGACATCAAATTCAAACAGAATGAAGCCGTGTC
AAAAAACATGCTCACTGTTTGGGAAGAGGGCAACCAATGTCAATTACCAT
CTGACTTGAGACAATTTTATGAAACAATGAATGGTCTACTGATTCAGtgg
aaaatcaaattcaatgacgatgaaattgaaattggcTTGATCGAGATTAA
TCCCATCGAATGTTTGAATGGTTTGGCTATGCGAATGAACCGTAACGATT
TGACTCTACAAGATTTTCAGCTGCCCAAAGATATCACAATGGACATAAAG
GTGAATCAAAGACCAATTCCAAACTTCAATCAGAAGATCATGGAAATTAG
CTCAGACGGGCAACATGGAAAAGTTTGCCTGCTTTTCAAAGaaaatggca
ATATTGAGGTTTGGCTGATTGATTTATCATTGCAATGGCATTACCTTGCA
CCGTCATTCAGTCATTACTACCGAATGATGGTCACACACTTGGGAATACG
TGGATGGCAATTCCTTTACACCGAATATGGACTCACTCCTGAGGCGAAGC
AATGGTTCAGTTTCTGCCTTCCACATCGACTAAAAGAAGACATATTCCAA
AAAGAAAACGACcacaaaccatcaaaaacaacaaataaagTTGACTTTGC
ATCACTGTTCAAACAGAAAAAGAAGACCAAGGACCCCAGTACTGGCACTG
CGTCCTCAAACGAGCAGAATTTAAACAAGCGGAAAAAACAGCCTGGAAAC
CTGAAGCCAAGGACAACAGCTAAACCTCCGGCTAAATTAAACAAAGCTTC
TTTTAAAAACCCATGAATGGACAAAGTTGGTGAAGAAACGTTAAGTCATG
CCACATTTGGCTTGATTGCCTTACTTCAGGAAAAGCCATACGTTTGTGAC
ATCAAATTCAAACAGAATGAAGCCGTGTCAAAAAACATGCTCACTGTTTG
GGAAGAGGGCAACCAATGTCAATTACCATCTGACTTGAGACAATTTTATG
AAACAATGAATGGTCTACTGATTCAGtggaaaatcaaattcaatgacgat
gaaattgaaattggcTTGATCGAGATTAATCCCATCGAATGTTTGAATGG
TTTGGCTATGCGAATGAACCGTAACGATTTGACTCTACAAGATTTTCAGC
TGCCCAAAGATATCACAATGGACATAAAGGTGAATCAAAGACCAATTCCA
AACTTCAATCAGAAGATCATGGAAATTAGCTCAGACGGGCAACATGGAAA
AGTTTGCCTGCTTTTCAAAGaaaatggcaATATTGAGGTTTGGCTGATTG
ATTTATCATTGCAATGGCATTACCTTGCACCGTCATTCAGTCATTACTAC
CGAATGATGGTCACACACTTGGGAATACGTGGATGGCAATTCCTTTACAC
CGAATATGGACTCACTCCTGAGGCGAAGCAATGGTTCAGTTTCTGCCTTC
CACATCGACTAAAAGAAGACATATTCCAAAAAGAAAACGACcacaaacca
tcaaaaacaacaaataaagTTGACTTTGCATCACTGTTCAAACAGAAAAA
GAAGACCAAGGACCCCAGTACTGGCACTGCGTCCTCAAACGAGCAGAATT
TAAACAAGCGGAAAAAACAGCCTGGAAACCTGAAGCCAAGGACAACAGCT
AAACCTCCGGCTAAATTAAACAAAGCTTCTTTTAAAAACCCATGAATGGA
CAAAGTTGGTGAAGAAACGTTAAGTCATGCCACATTTGGCTTGATTGCCT
TACTTCAGGAAAAGCCATACGTTTGTGACATCAAATTCAAACAGAATGAA
GCCGTGTCAAAAAACATGCTCACTGTTTGGGAAGAGGGCAACCAATGTCA
ATTACCATCTGACTTGAGACAATTTTATGAAACAATGAATGGTCTACTGA
TTCAGtggaaaatcaaattcaatgacgatgaaattgaaattggcTTGATC
GAGATTAATCCCATCGAATGTTTGAATGGTTTGGCTATGCGAATGAACCG
TAACGATTTGACTCTACAAGATTTTCAGCTGCCCAAAGATATCACAATGG
ACATAAAGGTGAATCAAAGACCAATTCCAAACTTCAATCAGAAGATCATG
GAAATTAGCTCAGACGGGCAACATGGAAAAGTTTGCCTGCTTTTCAAAGa
aaatggcaATATTGAGGTTTGGCTGATTGATTTATCATTGCAATGGCATT
ACCTTGCACCGTCATTCAGTCATTACTACCGAATGATGGTCACACACTTG
GGAATACGTGGATGGCAATTCCTTTACACCGAATATGGACTCACTCCTGA
GGCGAAGCAATGGTTCAGTTTCTGCCTTCCACATCGACTAAAAGAAGACA
TATTCCAAAAAGAAAACGACcacaaaccatcaaaaacaacaaataaagTT
GACTTTGCATCACTGTTCAAACAGAAAAAGAAGACCAAGGACCCCAGTAC
TGGCACTGCGTCCTCAAACGAGCAGAATTTAAACAAGCGGAAAAAACAGC
CTGGAAACCTGAAGCCAAGGACAACAGCTAAACCTCCGGCTAAATTAAAC
AAAGCTTCTTTTAAAAACCCATGAATGGACAAAGTTGGTGAAGAAACGTT
AAGTCATGCCACATTTGGCTTGATTGCCTTACTTCAGGAAAAGCCATACG
TTTGTGACATCAAATTCAAACAGAATGAAGCCGTGTCAAAAAACATGCTC
ACTGTTTGGGAAGAGGGCAACCAATGTCAATTACCATCTGACTTGAGACA
ATTTTATGAAACAATGAATGGTCTACTGATTCAGtggaaaatcaaattca
atgacgatgaaattgaaattggcTTGATCGAGATTAATCCCATCGAATGT
TTGAATGGTTTGGCTATGCGAATGAACCGTAACGATTTGACTCTACAAGA
TTTTCAGCTGCCCAAAGATATCACAATGGACATAAAGGTGAATCAAAGAC
CAATTCCAAACTTCAATCAGAAGATCATGGAAATTAGCTCAGACGGGCAA
CATGGAAAAGTTTGCCTGCTTTTCAAAGaaaatggcaATATTGAGGTTTG
GCTGATTGATTTATCATTGCAATGGCATTACCTTGCACCGTCATTCAGTC
ATTACTACCGAATGATGGTCACACACTTGGGAATACGTGGATGGCAATTC
CTTTACACCGAATATGGACTCACTCCTGAGGCGAAGCAATGGTTCAGTTT
CTGCCTTCCACATCGACTAAAAGAAGACATATTCCAAAAAGAAAACGACc
acaaaccatcaaaaacaacaaataaagTTGACTTTGCATCACTGTTCAAA
CAGAAAAAGAAGACCAAGGACCCCAGTACTGGCACTGCGTCCTCAAACGA
GCAGAATTTAAACAAGCGGAAAAAACAGCCTGGAAACCTGAAGCCAAGGA
CAACAGCTAAACCTCCGGCTAAATTAAACAAAGCTTCTTTTAAAAACCCA
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013855XLOC_013855Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024685-proteinTCONS_00024685-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024685-exon-sc0000507-1491911889:21611..21744TCONS_00024685-exon-sc0000507-1491911889:21611..21744Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1510915933:21611..21744TCONS_00024685-exon-sc0000507-1510915933:21611..21744Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1575043694:21611..21744TCONS_00024685-exon-sc0000507-1575043694:21611..21744Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1491911889:22085..22164TCONS_00024685-exon-sc0000507-1491911889:22085..22164Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1510915933:22085..22164TCONS_00024685-exon-sc0000507-1510915933:22085..22164Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1575043694:22085..22164TCONS_00024685-exon-sc0000507-1575043694:22085..22164Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1491911889:26897..26984TCONS_00024685-exon-sc0000507-1491911889:26897..26984Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1510915933:26897..26984TCONS_00024685-exon-sc0000507-1510915933:26897..26984Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1575043694:26897..26984TCONS_00024685-exon-sc0000507-1575043694:26897..26984Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1491911889:27625..27759TCONS_00024685-exon-sc0000507-1491911889:27625..27759Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1510915933:27625..27759TCONS_00024685-exon-sc0000507-1510915933:27625..27759Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1575043694:27625..27759TCONS_00024685-exon-sc0000507-1575043694:27625..27759Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1491911889:29858..29947TCONS_00024685-exon-sc0000507-1491911889:29858..29947Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1510915933:29858..29947TCONS_00024685-exon-sc0000507-1510915933:29858..29947Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1575043694:29858..29947TCONS_00024685-exon-sc0000507-1575043694:29858..29947Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1491911889:31161..31318TCONS_00024685-exon-sc0000507-1491911889:31161..31318Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1510915933:31161..31318TCONS_00024685-exon-sc0000507-1510915933:31161..31318Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1575043694:31161..31318TCONS_00024685-exon-sc0000507-1575043694:31161..31318Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1491911889:31594..32093TCONS_00024685-exon-sc0000507-1491911889:31594..32093Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1510915933:31594..32093TCONS_00024685-exon-sc0000507-1510915933:31594..32093Clytia hemisphaericaexon
TCONS_00024685-exon-sc0000507-1575043694:31594..32093TCONS_00024685-exon-sc0000507-1575043694:31594..32093Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000507supercontigsc0000507:21611..32093 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
74.3078	74.8419	88.5636	80.9737	62.7251	50.8455	43.65	43.5817	30.6939	26.0183	28.7945	26.7806	13.4954	12.3842	13.9133	13.2486	17.6981	17.7282	9.40489	10.4404	12.253	9.85402	33.168	33.8062	39.3196	38.7814	10.1521	6.0945	17.103	19.2215
Blast
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BLAST of TCONS_00024685 vs. Swiss-Prot (Human)
Match: TPGS2 (Tubulin polyglutamylase complex subunit 2 OS=Homo sapiens GN=TPGS2 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.162e-44
Identity = 83/252 (32.94%), Postives = 135/252 (53.57%), Query Frame = 2 
Query:   98 LSHATFGLIALLQEKPYVCDIKFKQNEAVSKNMLTVWEEGNQCQLPSDLRQFYETMNGLLIQWKIKFNDDEIEIGLIEINPIECLNGL---AMRMNRNDLTLQDFQLPKDITMDIKVNQRPIPNFNQK--IMEISSDGQHGKVCLLFKENG-----NIEVWLIDLSLQWHYLAPSFSHYYRMMVTHLGIRGWQFLYTEYGLTPEAKQWFSFCLPHRLKEDIFQKENDHKPSKTTNKVDFASLFKQKKKTKDP 823
            L   T G+  +L+  P V ++   +     ++M++ WE+ N C +P D++ FY   NG  + W +K ++  I +G + IN I  L  L   +M    N  TL D +   D T +   +Q   P+F+ +  I E+ S    GKVCL++K        + E+W +D +L WH+L  +F+ YYR+++THLG+  WQ+ +T YG++P+AKQWFS   P     ++  +E D       NK+D + +FK K K   P
Sbjct:   17 LEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCVMPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLADLE---DDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRALYWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD----SFVNKLDPSKVFKSKNKIVIP 261
The following BLAST results are available for this feature:
BLAST of TCONS_00024685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPGS24.162e-4432.94Tubulin polyglutamylase complex subunit 2 OS=Homo ... [more]
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