|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024638 ID=TCONS_00024638|Name=TCONS_00024638|organism=Clytia hemisphaerica|type=transcript|length=2968bp
GGTTTTTATACGGAACCGAACACTCCTAAAGTTTTGAACATTTCCCTCTT
TTTGACGAAATCTTTTTTATCTAGTGAGTGTGTCCAGCCCCTGtcatctt
tttataaaaataaaatttatataaaataGTTGCCCGGGAAGAGGAATAAA
AAGTGACGTCATCTTTTGTCTCTCAACAAGATGAGATAGTATAATgcatc
aaaaatcaaaacaaaaatttaaaatatctcaaattaaATTCGGTATTTTG
GAAGCTGGTAACTCAAGATGCATGGGACCAAAAAGAACGATGTTGACATC
AAAATTTCTACAGATTACCGTTCATGGATTTGGTTCAAATATATTTACAT
CGGATGTGCGGACATCTGTTTCTGGTGGACAGTATGGAACATTGCAGATC
ATCTATGGCCTATGGACATCACTACAGACGGTGCTCTATCGTATGTCCGT
GGTTACATGTTGATCATAGCTGCCAACCTCTACTACCTGCTCCAACGATT
ACTGTTTCGCGAGACTTGTCATAAGTTTTATGAAACACGTGAGAAACATT
TACATCCAGCATGCATTGTAACAGAAGAAGAGGTCATCCGAAATAAACCG
ATTCGGTTTCAAGTTTTGAAGAAGGTGTTGACGTTAATGATATGGATGGT
GGTTGTGGGGTTCATTCAAGTGTGGCGTGGATTGTTCGCCACTTTCGACT
ACGTTGTCGATTTGCTACACCTTCATTTCGATATCAACAAGATCTTGAGC
TCTGTCATCTTTCAACTGATTGTAGGAATAACCCTGGCCTTCACACAAAG
AAACAATGCAGTCAACTTGTGTCCAACACACAAGATTTATAAGTATGACG
AACTGGAGGAAATGGATGGCTTGTTCAGTCtccatgtttttgaaaatttg
ttgttGAAAGACGATCAAAAAACTAGCAACACTCGAAATAGCAAAATGGA
GATTAAGGAAGCCCAAACATCAGTTCCTCCtcctccaccaccaccacccA
CGAAGAGTAGAAGGAAATTTTCTCCTTTAAATTCTGGTTTTGATCTTCCA
CAATACGCAGCACGTAAGATTTCCGGACAACTTCATCGTTCGAGCAGCAC
CAACAGCCTGTATTCACAACGAAAAGCCTCACAGTCATCAAAGAACTCGG
ACATGAGCTCAGTTGCGTCAACCGTATATCAGGACAGTACACCACCATCT
TGTAAAACGTCAACCTCTAGTTTACAATCAACCGAGTCAACAGAAGGGCG
AAAAATGTCACGTGTTGAGTTAGACTTCAACGagaagaataaaagaaaaa
tcagcaCTATGTCATTCTTGAACGCCCCCTCGTTTGAAATCATTGAAGAA
GAGCAGCACGAAAACGAGGCCGGAAACTCGTTCCCAGACCAAACGATGAT
CGGCATCGACAATAAGAATTTCCTTAACACTGAAGTTGAAGATGAAATCC
CGATGCACAAACTGAGTGAACAATCAAATACCCTTTTCATAGATCTTAAG
GATATACAGGACAacaataaagaagaaaatgcTGACGTTGCAGAAGCAGC
CTGTGATATTTCATTGGACGTGATTGGAGGCTCGTCTACTGAAGAGATGT
CAACATCATCTGAAAGCTTCATGCAACACGTGCGACGAGCAAGTTTCCGA
AGACGTGTGCACTTTGAAGAGCTCGATGATAAAGACTCAGTGGACTCACT
TGATTTGAATGCAACAACGGGTACTGAATTTCGTTACAACCACTGCAAGG
TATGCTTGTTCATCAGTATTTTGACGTACATATACACTATCCACCATCGA
CAAGTATTCCTTCATATCTTCGGTGGAATGTTCTGGAGTACAACATGGAA
ATTGTTCGATTTCGCAACAGAATCCATTTTCactaaaaccgcaagtgata
TTCCAGGACTCGTTTTGATTGctattttttgtcattctatgaACCATTTG
GTTTTGTTTCGATTCAAAGAGATGGCTACGAAGCTTCATTGGAAAACATT
TTGGGAATTCTTTTGCGGATTGTTCACAGTCTGTCTTTGGGCACCAACTT
GGTATGTGTGGGATGTCATAGCAGAAGCGACAGGCTACAAGTTGTATTTT
CAAATTGGAATACATGTGTTGTCGTTCTTCAGCTTGGTGTACTTCAACGT
CTCCATAAACCTCGCTCTTTGATCAACGTTTTCCAGTGGACGTTTTGAAG
TCAAAACATGAAGAAAACGGAAAGGATAGATAAAAAGGACAAACTCGAGG
GAAGTTTATGAAATATCTTTTAAACTAAATCTTCAGTAAATTTAAAGTAG
ATTTGAAGTTGTAAAGATAAAATAGAATTTGTAGTGGATTTCTTAATTAA
CTAGGaagattttatttaaaagaattgtACATAATTTGAAACATTTAATT
CTTTGGTAGATTAAATTATTtctctttattagaaaaatatcTGACATTCT
AAGGGATCACAAAAACCTCTGTGATGATTGAATTCTTCTTAATATGGTTA
GTGGCAAAAGCACCAGGAGCACTGCCTTATGAAAGTGAATGGTATTTTGT
ACTTATTTTTGGATGTATCACCGATCGTAACATGATAAGATTAGCAATTT
ATATTTTGACCAGGAAAATCAGATTAGtggttgaaaatttcttttgattc
ccGACCAAGTATAAAGAATGTCATTTTGAAGGGTCGAAAACAATGTCAAA
AGTGACGCGTGTCAAGATCGACTGTCATTTCTCTATatggcaaaaatatt
tgaatggacacatttttcaaaatttcaagactttttaTCATGTCcgaaaa
tcatttaaaaagaacCAGGAAAAATATactttcattcaattttttgatat
gAAACTTACAACTAGGTTTAAGGACGTAATGCATCAAAAAAATTGTATCA
AAACTTATCGAAAAAGAACTCTGAAATAAATAAAGATCAGACCGAGAAGT
TATGTAAGAGTCTTTCTT Run BLAST on NCBI transcript from alignment at sc0000506:179776..184685+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024638 ID=TCONS_00024638|Name=TCONS_00024638|organism=Clytia hemisphaerica|type=transcript|length=4910bp|location=Sequence derived from alignment at sc0000506:179776..184685+ (Clytia hemisphaerica)
GGTTTTTATACGGAACCGAACACTCCTAAAGTTTTGAACATTTCCCTCTT
TTTGACGAAATCTTTTTTATCTAGTGAGTGTGTCCAGCCCCTGtcatctt
tttataaaaataaaatttatataaaataGTTGCCCGGGAAGAGGAATAAA
AAGTGACGTCATCTTTTGTCTCTCAACAAGATGAGATAGTATAATgcatc
aaaaatcaaaacaaaaatttaaaatatctcaaattaaATTCGGTATTTTG
GAAGCTGGTAACTCAAGATGCATGGGACCAAAAAGAACGATGTTGACATC
AAAATTTCTACAGGTAGGAatgtgaatttccctttttctgaCGGTGAACA
TTTTTCTGATGGTGAACATTTTTCTGATGGTGAACATATCTATGATGGAA
ATTGAAAAGAGGCGTCCCATCTGACCACCTCTcagcaaaaaatcaaatga
taaaaCCGTTCGATAACTTGATTTCAGATAGGGGGTATACTCTCTTTACA
GCGATTATACTTTGATAAATGACTGTGTGTAATGCTTCCATCTCACGAAA
TCGGCTTAGTAAATATCGATTCTTAAATATCTTATAATGGTGCtgacatt
ttgatattttaagtGGAGTACTTTTGCACCGATCAGTGACTTTATAAGAA
CCggcaaaaacaaaatttgtcagtcagtgatgttttcaatttttcgaccT
TTCGATATTTGATGAACACGGGTCacatttcaaatattgtttCAGCCCCA
TTTATCGGGGAGATGAGAGTCATAGAGTGATTCGAATATCGGAAGGATAG
CTTGCAGCGAGAATAAGGAAGTGTTTTGAGGCATTCATCTAATGCATGGT
GCCTTTAATGAGATACTTAATGAAAATTAAAGTATTTATACATTCAATTA
ATTAATACTACCGTAATGGAATCACAGGAAATAAATGATAATTGGTTGGA
TGTCTAATATCTTACTACCGGACTTCAACTTCTAGTTGTACCGTTGTTTT
TATGAGGTATACTGAATGAGAATACAAATTCTAAACTATCACACATGCGT
GTTTAATGGGGTGTTTAGTTACAAGATGGTTCCCCGGTAATCACTTAATT
ATCATCGGTCCGACGAAAACGCTCAAAGGGGTTTATTTCTCTTTAAACTA
ACATCTTTCTTTCACCCTCATGTCATAAGACCATCAAATGacgttcaatt
ttcattcagatGTCAAAAATAGGGTCTGATAGTCTTTCAAATGAGAGGTT
CATTCATACTTTGAAATGTTAATGTACCTCAAAACATGAGTTTGACGAAA
GAACGCAAGAAAAAAGGCTGTTTTCATGCCAAGAAGTCATCAAGAAAAGG
CGGGGATGCTTTTTGGAGAGATTTtctcagatttaaaaagattaagATGA
AAATCGTCTTTAGCCTCAGTAGGAAGACTGCCCATCTAGCCTTCTTTATA
AAGCCGTTACACAGTTTCTGCTTAATGACATCTCCACAtcaattttatgg
attttaatTAATCAGGAGAGATACTGTAGGATGCGTTCTTGAGACATGCC
ACTAGACCATGGTAATTTCGAAGATAAAAATGGGTGGGTTCTCTGTCAAT
TTACATCTAATTAAGTACAAGAATATTAGCTAATTCAACACCCTTTTCTC
CCTGAATAAAAGATATGTAGCCAAAGCGTAAGGAAACCTATCGAAGAAGT
AAATTGTGCTAGCAAACATTGGCTAGGTCCTCAGTCAAAAATTGCacccc
atttgatttgatttcataCTTTTCGACTTAACAATGTGGTTTAATAATGA
AGAGAGTTTGATCGAGTGTAAAAATTCCTGTATCCATATGAATTCAATAA
TAAGTTTTTGTCAACCTTTTTCAGATTACCGTTCATGGATTTGGTTCAAA
TATATTTACATCGGATGTGCGGACATCTGTTTCTGGTGGACAGTATGGAA
CATTGCAGATCATCTATGGCCTATGGACATCACTACAGACGGTGCTCTAT
CGTATGTCCGTGGTTACATGTTGATCATAGCTGCCAACCTCTACTACCTG
CTCCAACGATTACTGTTTCGCGAGACTTGTCATAAGTTTTATGAAACACG
TGAGAAACATTTACATCCAGCATGCATTGTAACAGAAGAAGAGGTCATCC
GAAATAAACCGATTCGGTTTCAAGTTTTGAAGAAGGTGTTGACGTTAATG
ATATGGATGGTGGTTGTGGGGTTCATTCAAGTGTGGCGTGGATTGTTCGC
CACTTTCGACTACGTTGTCGATTTGCTACACCTTCATTTCGATATCAACA
AGATCTTGAGCTCTGTCATCTTTCAACTGATTGTAGGAATAACCCTGGCC
TTCACACAAAGAAACAATGCAGTCAACTTGTGTCCAACACACAAGATTTA
TAAGTATGACGAACTGGAGGAAATGGATGGCTTGTTCAGTCtccatgttt
ttgaaaatttgttgttGAAAGACGATCAAAAAACTAGCAACACTCGAAAT
AGCAAAATGGAGATTAAGGAAGCCCAAACATCAGTTCCTCCtcctccacc
accaccacccACGAAGAGTAGAAGGAAATTTTCTCCTTTAAATTCTGGTT
TTGATCTTCCACAATACGCAGCACGTAAGATTTCCGGACAACTTCATCGT
TCGAGCAGCACCAACAGCCTGTATTCACAACGAAAAGCCTCACAGTCATC
AAAGAACTCGGACATGAGCTCAGTTGCGTCAACCGTATATCAGGACAGTA
CACCACCATCTTGTAAAACGTCAACCTCTAGTTTACAATCAACCGAGTCA
ACAGAAGGGCGAAAAATGTCACGTGTTGAGTTAGACTTCAACGagaagaa
taaaagaaaaatcagcaCTATGTCATTCTTGAACGCCCCCTCGTTTGAAA
TCATTGAAGAAGAGCAGCACGAAAACGAGGCCGGAAACTCGTTCCCAGAC
CAAACGATGATCGGCATCGACAATAAGAATTTCCTTAACACTGAAGTTGA
AGATGAAATCCCGATGCACAAACTGAGTGAACAATCAAATACCCTTTTCA
TAGATCTTAAGGATATACAGGACAacaataaagaagaaaatgcTGACGTT
GCAGAAGCAGCCTGTGATATTTCATTGGACGTGATTGGAGGCTCGTCTAC
TGAAGAGATGTCAACATCATCTGAAAGCTTCATGCAACACGTGCGACGAG
CAAGTTTCCGAAGACGTGTGCACTTTGAAGAGCTCGATGATAAAGACTCA
GTGGACTCACTTGATTTGAATGCAACAACGGGTACTGAATTTCGTTACAA
CCACTGCAAGGTATGCTTGTTCATCAGTATTTTGACGTACATATACACTA
TCCACCATCGACAAGTATTCCTTCATATCTTCGGTGGAATGTTCTGGAGT
ACAACATGGAAATTGTTCGATTTCGCAACAGAATCCATTTTCactaaaac
cgcaagtgataTTCCAGGACTCGTTTTGATTGctattttttgtcattcta
tgaACCATTTGGTTTTGTTTCGATTCAAAGAGATGGCTACGAAGCTTCAT
TGGAAAACATTTTGGGAATTCTTTTGCGGATTGTTCACAGTCTGTCTTTG
GGCACCAACTTGGTATGTGTGGGATGTCATAGCAGAAGCGACAGGTTATT
AACTTATTTGACTATCGTCTAAACAATTCTTCAAATAAGGAACCTCAATC
AAGGGAAGGGAAAATGGCAATCCAATAAGAATTGATGAACTAAGCGCTAA
CAGTAGAGAGGTTATTTCATAGTTGTTTTATTTTCCTTGTTCCCTGACAA
GAGAAAGTTGTCAGaccataaaattaaaaaaacgcgTGCAAATCTTCTGT
CTCGGTATTTTGTCTGTCATCTCCTCAAGTCCAATGGTGAAAgataaaaa
tctcaaattttgtttctggtAAGGGTGAGGATAGAAATATTCTGTGCCCT
TTTGATATCGagtcaaattaaaagaaaacagAACAATATATTCTTACCGT
TACACttccttcttttcttttgtagGCTACAAGTTGTATTTTCAAATTGG
AATACATGTGTTGTCGTTCTTCAGCTTGGTGTACTTCAACGTCTCCATAA
ACCTCGCTCTTTGATCAACGTTTTCCAGTGGACGTTTTGAAGTCAAAACA
TGAAGAAAACGGAAAGGATAGATAAAAAGGACAAACTCGAGGGAAGTTTA
TGAAATATCTTTTAAACTAAATCTTCAGTAAATTTAAAGTAGATTTGAAG
TTGTAAAGATAAAATAGAATTTGTAGTGGATTTCTTAATTAACTAGGaag
attttatttaaaagaattgtACATAATTTGAAACATTTAATTCTTTGGTA
GATTAAATTATTtctctttattagaaaaatatcTGACATTCTAAGGGATC
ACAAAAACCTCTGTGATGATTGAATTCTTCTTAATATGGTTAGTGGCAAA
AGCACCAGGAGCACTGCCTTATGAAAGTGAATGGTATTTTGTACTTATTT
TTGGATGTATCACCGATCGTAACATGATAAGATTAGCAATTTATATTTTG
ACCAGGAAAATCAGATTAGtggttgaaaatttcttttgattcccGACCAA
GTATAAAGAATGTCATTTTGAAGGGTCGAAAACAATGTCAAAAGTGACGC
GTGTCAAGATCGACTGTCATTTCTCTATatggcaaaaatatttgaatgga
cacatttttcaaaatttcaagactttttaTCATGTCcgaaaatcatttaa
aaagaacCAGGAAAAATATactttcattcaattttttgatatgAAACTTA
CAACTAGGTTTAAGGACGTAATGCATCAAAAAAATTGTATCAAAACTTAT
CGAAAAAGAACTCTGAAATAAATAAAGATCAGACCGAGAAGTTATGTAAG
AGTCTTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024638-exon-sc0000506-1491911889:179776..180088 | TCONS_00024638-exon-sc0000506-1491911889:179776..180088 | Clytia hemisphaerica | exon |
| TCONS_00024638-exon-sc0000506-1510915933:179776..180088 | TCONS_00024638-exon-sc0000506-1510915933:179776..180088 | Clytia hemisphaerica | exon |
| TCONS_00024638-exon-sc0000506-1575043694:179776..180088 | TCONS_00024638-exon-sc0000506-1575043694:179776..180088 | Clytia hemisphaerica | exon |
| TCONS_00024638-exon-sc0000506-1491911889:181650..183419 | TCONS_00024638-exon-sc0000506-1491911889:181650..183419 | Clytia hemisphaerica | exon |
| TCONS_00024638-exon-sc0000506-1510915933:181650..183419 | TCONS_00024638-exon-sc0000506-1510915933:181650..183419 | Clytia hemisphaerica | exon |
| TCONS_00024638-exon-sc0000506-1575043694:181650..183419 | TCONS_00024638-exon-sc0000506-1575043694:181650..183419 | Clytia hemisphaerica | exon |
| TCONS_00024638-exon-sc0000506-1491911889:183801..184685 | TCONS_00024638-exon-sc0000506-1491911889:183801..184685 | Clytia hemisphaerica | exon |
| TCONS_00024638-exon-sc0000506-1510915933:183801..184685 | TCONS_00024638-exon-sc0000506-1510915933:183801..184685 | Clytia hemisphaerica | exon |
| TCONS_00024638-exon-sc0000506-1575043694:183801..184685 | TCONS_00024638-exon-sc0000506-1575043694:183801..184685 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000506 | supercontig | sc0000506:179776..184685 + |
Blast
The following BLAST results are available for this feature:
|
