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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024536 ID=TCONS_00024536|Name=TCONS_00024536|organism=Clytia hemisphaerica|type=transcript|length=1962bpRun BLAST on NCBI protein sequence of TCONS_00024536-protein >TCONS_00024536-protein ID=TCONS_00024536-protein|Name=TCONS_00024536-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp MEVSVIETKAFDNQKPGTSGLRKPTETFVQENYVENFTQSIFNAVGHSAHRun BLAST on NCBI transcript from alignment at sc0000502:227652..237480+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024536 ID=TCONS_00024536|Name=TCONS_00024536|organism=Clytia hemisphaerica|type=transcript|length=9829bp|location=Sequence derived from alignment at sc0000502:227652..237480+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000502:227652..237480+ >TCONS_00024536 ID=TCONS_00024536|Name=TCONS_00024536|organism=Clytia hemisphaerica|type=CDS|length=18282bp|location=Sequence derived from alignment at sc0000502:227652..237480+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024536 vs. Swiss-Prot (Human)
Match: PGM1 (Phosphoglucomutase-1 OS=Homo sapiens GN=PGM1 PE=1 SV=3) HSP 1 Score: 664.07 bits (1712), Expect = 0.000e+0 Identity = 326/561 (58.11%), Postives = 429/561 (76.47%), Query Frame = 2
Query: 53 MEVSVIETKAFDNQKPGTSGLRKPTETF-VQENYVENFTQSIFNAVGHSAHGR-TVVVGGDGRYFMKESVHTIIKMAAANKIGKLIIGQDGILSTPALSCLIRMRKAIGGIILTASHNPGGIKGDFGIKYNMSNGGPAPEAVTAEIFRHSSEMKEYRICKEVEVDISRIGQKRFRVNGK--DFVVQIVDSVDDYLYMMKDIYDFKLLREYIKTQN-LRICVNAMNGVTGPYLKKIFEKELETGEGSVINSTPLVDFGGIHPDPNMTYAADFVDMMKKGEYDLGACFDGDGDRNMILGKEAFFVNPSDSVAIIAAHCQCIPYFKKTGIKGFARSMPTGSSLDKVAEKCGVKCHEVPTGWKFFGNLMDADQLSICGEESFGTSSDHIREKDGVXXXXXXXXXXXNQQNSVQQIVEEHWKTYGRNFFTRYDYENVESKGANELMTNLRQLASDQSLVGQAMSEQ---YTVQLMDDFRFEDSIDQSVTEKQGIRIIFTDGSRLVFRLSGTGSSGATIRLYIESYCNEDSKLKTPTQEMLKPLVDMALKISNLVLLTGRSEPTVIT 1711
+++ ++T+A+ +QKPGTSGLRK + F NY ENF QSI + V + T+VVGGDGR++MKE++ I ++AAAN IG+L+IGQ+GILSTPA+SC+IR KAIGGIILTASHNPGG GDFGIK+N+SNGGPAPEA+T +IF+ S ++EY +C +++VD+ +G+++F + K F V+IVDSV+ Y M++ I+DF L+E + N L+I ++AM+GV GPY+KKI +EL S +N PL DFGG HPDPN+TYAAD V+ MK GE+D GA FDGDGDRNMILGK FFVNPSDSVA+IAA+ IPYF++TG++GFARSMPT +LD+VA + +E PTGWKFFGNLMDA +LS+CGEESFGT SDHIREKDG+WA LAWLS+LA ++ SV+ I+++HW+ YGRNFFTRYDYE VE++GAN++M +L L D+S VG+ S YTV+ D+F + D +D S++ QG+R+IFTDGSR+VFRLSGTGS+GATIRLYI+SY + +K+ Q ML PL+ +ALK+S L TGR+ PTVIT
Sbjct: 2 VKIVTVKTQAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIARIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAVCPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRSIFDFSALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVASATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISRNQGLRLIFTDGSRIVFRLSGTGSAGATIRLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562 The following BLAST results are available for this feature:
BLAST of TCONS_00024536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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