TCONS_00024568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024568
Unique NameTCONS_00024568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024568 ID=TCONS_00024568|Name=TCONS_00024568|organism=Clytia hemisphaerica|type=transcript|length=286bp
CGATTGCTTACATCCGAGACATTCCAATTCATCCCAAATTGCAAAATACC
ACATACGGGCTGCATCGTTTAGCCCGTAAACACATTTTTCTAGCTTCCAC
AGTTTATTCCCTTTGGTTTTGATTGGAGGGACAATATAAACATCACGTTC
GATAggtttaccttgtaagaacgCAGCTTTAATGTCTAGTGTTTGTAGCG
TCCAGTTCTTACTAGCCACGATGGAAAGAATTAAGCGATTGCTTTCTTTG
CTACCAGTTGGCGAGTCAGCAGGGATTGAAGATTCC
Run BLAST on NCBI

transcript from alignment at sc0000502:106079..106364

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024568 ID=TCONS_00024568|Name=TCONS_00024568|organism=Clytia hemisphaerica|type=transcript|length=286bp|location=Sequence derived from alignment at sc0000502:106079..106364 (Clytia hemisphaerica)
GGAATCTTCAATCCCTGCTGACTCGCCAACTGGTAGCAAAGAAAGCAATC
GCTTAATTCTTTCCATCGTGGCTAGTAAGAACTGGACGCTACAAACACTA
GACATTAAAGCTGcgttcttacaaggtaaaccTATCGAACGTGATGTTTA
TATTGTCCCTCCAATCAAAACCAAAGGGAATAAACTGTGGAAGCTAGAAA
AATGTGTTTACGGGCTAAACGATGCAGCCCGTATGTGGTATTTTGCAATT
TGGGATGAATTGGAATGTCTCGGATGTAAGCAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013798XLOC_013798Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024568-exon-sc0000502-1491911889:106079..106364TCONS_00024568-exon-sc0000502-1491911889:106079..106364Clytia hemisphaericaexon
TCONS_00024568-exon-sc0000502-1510915933:106079..106364TCONS_00024568-exon-sc0000502-1510915933:106079..106364Clytia hemisphaericaexon
TCONS_00024568-exon-sc0000502-1575043694:106079..106364TCONS_00024568-exon-sc0000502-1575043694:106079..106364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000502supercontigsc0000502:106079..106364 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.457979	0	1.55564	0	0.61761	0.771351	0	1.10246	0.38593	0.478037	0.0736711	0.305011	1.40928	0.316317	0	0	0	1.05716	0	0	0	0	0.299582	0	0.769773	0.438841	0.208559	0	0.119655	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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