TCONS_00024473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024473
Unique NameTCONS_00024473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length930

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024473 ID=TCONS_00024473|Name=TCONS_00024473|organism=Clytia hemisphaerica|type=transcript|length=930bp
AACACCGGAACATGAAAATATTCCATGAAACTAAAGTGCCGAACGAGCTA
CATCGTTCATTTTTCAAATCGAAAGTAATCAAGCAACACGTGTGTAGGCC
AGATATTTCTTGTGGCTCATCTTCTTTgaccaaaaaacaacaaacataAA
TACAATGACTGAAAACAAAGTTGAAGAAACATCTGATCTTGACAAGAAAA
TTATCAGACAAGTTGAGTATTATTTTGGGGATACTAATTTACCGAAAGAT
AAATTCATGAAAGAGAAAGTCAAAGAAGATGATGGCTGGATCTCTGTAGA
ATGTTTGACAACATTTAACCGCTTGAAGCAACTCTCTACAGACTTTGAAG
AAATCTGCAAGGCATTGAAAAAGTCAGACTCTGGATTACTCGAGATTAAT
GAAACTGATTTCAAAATCAGGAGGTCGAAAGACAAACCAGTCCCTGACTT
GGACGATCCAATGGTAGTCAAAACAAAGAAGATGAAAACTCTATATATGa
aaGGATTTCCAAAGGATTATACAATGGATCAAATCTCTGACTTTTTACGA
GAACATGGTGCAGAGTCTGTGTTCATAAAGATGCGAAAGAGAGATGACTT
CGAATTCAAGGGATCTGTCTTTACTGAGTTGCAGACGCAAGAACAAGCTG
ATGCCTTTCTGGAAAAGAAAGATCTGAAGATTGGAGAGGAAGAAGTTATG
CAGATAATAAAAAGAGAGGATTACTTCGAAATGAAAAGTCAAGAAAGACG
AGGCAAAAATGCTGAAGAACAACAGTACGTATCAAACACTatgaaatttt
tagaaattgtcTTTACTTTAGTCAAGTCCCAGATCGACCTAATCGGCAAT
TCAGGGGAATTGTATTTCTGAAAAATTACTAATTTATTTTCCCTGAGAAG
TTTTTCCTTTGAAAGTTTCCCATAGTTCGG
Run BLAST on NCBI

transcript from alignment at sc0000499:221138..231363-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024473 ID=TCONS_00024473|Name=TCONS_00024473|organism=Clytia hemisphaerica|type=transcript|length=10226bp|location=Sequence derived from alignment at sc0000499:221138..231363- (Clytia hemisphaerica)
AACACCGGAACATGAAAATATTCCATGAAACTAAAGTGCCGAACGAGCTA
CATCGTTCATTTTTCAAATCGAAAGTAATCAAGCAACACGTGTGTAGGCC
AGATATTTCTTGTGGCTCATCTTCTTTGACCAAAAAACAACAAACATAAA
TACAATGACTGAAAACAAAGTTGAAGAAACATCTGATCTTGACAAGAAAA
TTATCAGACAAGTTGAGGTATCATAATTATTCATTTATATACTTAAACCC
CGGAACCTCCGAGCCGAAAATCGAAAATCGACCCTTTGAGAGACTTTTTC
CTAAATTTTGGTCCATTTTTTCCAAATTTTGGTTTGATTTTCACCAAATT
TTGGTCAAAATTTTTGGAAATCGTGACCCTTTGAGAGAAAATTTTTTGAT
TTTCGTCATTTTGGGACCCTAAGACTAACTTTTGAATTTGTACCCCTTTG
CCAGTGGATTTCGTGTAACTAACGCCGAAGTTCTTCGGGGTACAACTGAA
ACGTTTTTGGCGCATTGGCGTAAGGGTAATTACAAAGATTGTTTGATTTT
CAGTTGGTGTAAAGTAATAATTCCAGCTCGGCGTGAATGACTCCATAATC
CATCGATTTTTAGCTTCCATTTGGCTAAATTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGCGTATAGTAATAATTCCAGCTCGGCGTGAA
TGACTCCATAATCCATCGATTTTTAGCTTCCATTTGGCTAAATTTGCTTT
CGCTCGCTTGCGCTCGTGTCAATTTATTAATTATGTTGGCCCATGCGCCT
CTTTTCCCATCTTGCACCCTTATTGAAAAATTGAATGTTGGTACAAAAGA
AATTTTGCTTGGCGTGAGGCTTGCTGCACGGATAAATATCTTCGACGCAA
GATTTCGTGGAATCCATACTGGCCCCTTTGAGCAGTGCGCCACCACAAAC
CGCCATATAAACAAAATTCAACATTCTCCGTCTAAAGCGTTCACTTCCAC
AATAATTTATGTAAATTGCAATTTCGGTCAGTCCACAGTCGGCTTCAACA
TATACACATGTTTTTATTTACGTGACCGAAGTGTCTACTAAAACAATCTG
GGGGTAAGCGGCAAAGCAACTCAGCAAATTAAGTAAAGAAATATCTTTTG
GCATTGGCGATCAAATATAATATATATTATTATTTCCTTAATTCAAAAAT
CAAAAATTCATTTTTCATTCACGAAAAATAGAAATAAAAAAGTAATGAAT
TAATATTATACTAAGACGCCCTTTTTTACTCTCGTTTTAATTTCCGATCT
CGGAACGTGCAAAACGCCCGTCCGCCCAATATCCACNTTTCTAGGGCTTC
GTTTATCGCGCAATTTTTGCGTCACACAAACTTTCTCGGCCGCTCGTAAT
AATTATGCATTGCCAAATTTGGTTCTCCATTGTCAAGTCAGGAAATCAAA
ATTGATGATGATGATTTCNACCCAATCAGCTTAAATTCACTTTAATTGTC
CTTTGACTTTCAAAAAATAGTATTTAAAAATTATGAATTTATAATAATTA
CAAAAAACAAAGTTTGATACTTCATCAGTGAAATATTCAATAAATTCCTA
GTTTCAATTTTTAGTGCAGGGGGGGGTCATGCAGTTATTATATAAACACT
ATGACAATTACTACCGTGGTGGTATATAAACCAAAATTTGGGAAAACAGT
TACTCCACCAGTGGACTAACTGCAACATGGATGGTGCCTAAGCCCAAAAT
TGTCGATTTTGGTAGGATAAGGTGTACTAAGTGAGCACATTTTTCAATTT
TACNGCCCCCCCCCCCCCAGGACTTAAACTAAAAGCTTTGCTGCAGGGAA
AATGTAGCTAACTTTTTTTGTTTTTATAGCTAGACAGACACAAAATTTCA
GCGTTATCCGTTGCAGTGTGCTCCCTCTAAAAATTTGTAACCGTCAAACC
TCAATTTTGCACAGACACCCCTGAGAATAAACTATTGGCTTCCAATAGTT
TCCAGTTCCAAAATTCAATCGAACCTAATCGAACTCTTGTATATTGCTCA
TTCCGACATCANAAAATTCCGGAAGTAAAAAAATTCAAAACATTTTTTTC
AAAAGTCAGAAAAAATCACAAAATTTTTTCTTCAATCAAGGCATGAAAGA
TACTCAGAGATACTTTAACAAACTTGGAAAATAATTGAGATATATAACTC
TTGAACGGTCGTTAATAAGACGAACCCAGTAAAATGGTATCAAAAATGAG
GAATTCATTGAAAAAATTGCCAAATTTGGCACTTTTGGGGGTGGTATACA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTCTGCCTGTCTTCTCTGA
GGCTTTCTTCTGACCCCCTGGTGACTTTTCTAACTTATTTACTATGTTTT
CTGACTATTTTAAAGTGTTTTAACTTACCTTGAAACATCCACCAAATGAA
AGAGTTTCTGATCAGAAACCCAGCGCGCTATCCGTTGAGCCACACTCGCA
TAGCAGAATACAAAATTTGGAAATACTTATAGAATGACAAAAAAGACGGG
TGTAATGTTATTATAATGGGTAAAATTGCCCCTTTTTTAACCTGACTGAA
ATTCGAGCCGTTACTAGCAACCCTGGCCTAAGCAATTCCAAACAACAAAA
CCCCCGGAAAATTAAAAATGTCGGAATGATCAATATACAAGAGTTTTTTC
CTAATCGAACACTCACAATTTTTGAAGCAATAGCAGTTCGATTAGTTCGG
TCAGTAAAAACTTCGATTAGTTCGATGATATTAAATCCTCATATCTTCCC
TCGCTTGCAAAAAATTTATCCTGGCACGCGATTGCCATTTCGACAATTCC
CGGACTTAACAGCTTAACGTTTAAATTGTACCCAGACATATTTGTCTATC
CGAAATAAATTCCTTAGCCCCTCTGTCGCAATTTCGCGTGCGGCCGAGTG
GCGGAATACTACGCCCAAACAAACCACTTAAACTGGCCCTAAAAGTATAT
ACAGGAAAAGTGTGTAATCCGTCATTGGAAGTAATTTCCCGATTTATATA
CATTCCGAATTTGGCTTAAAAAAGAAGCTAATATACGGTGGCGACACATG
CGTTTGGTTTGGGAACGCAAAACACGAACGCGAACCACCAATGTCTAAAC
TTTTTAATATATCTCCAGAACTAACAGATTTTTTGAAGTTCTGTAAAAAG
GTCCAAGCTCCTGAATAGTTTCACTATGTTCTGTGGAAAAATCATAACCA
TCAGTCAAATACTCGTTCATCTATTTAAGATTGAAGACAAAAATTTGCAA
AGAAAAATAAACCTTGAGCACAAAAAATGCTTTTTTAAACACTTTTTTCC
ACCGAAAAACAATAACTTTTTTTAGACTTACCTTCCCCAAACATTGAAGA
AGTATTCACTGCAATGCCAAAGAGCATAAGAAACTTAAAAAACACTTCAA
CTGAAAAATTTAAAAATGCCTTTGACACTCACTTAAAGTCGATCCCGGAC
NCAAACAAAACGCTTCAACTGAAAAATATAAAAATGCCCTTGACACTCAC
TTGAAGTCAATCCCAGATGAACCCCAAATTTATGGATATACTGGGTGCAG
GAGAGCTAATTCAAACTCAATACTTGACATGAAAAATATCTGCTGAGATT
CTTTTTCCCTCGACAGATTGATCAAACAGGCGTGGTTCACCAAGAACCTT
ACCTGAGCACTTTGCTCGAACACCTACACAAGTAACACAAGTAAGAAGCC
TCTACTAATTATAGTAGATGAGATAAGATAAGAGAAAACCTTAAAATCAA
CCAGAATTTACAACCTTTTCTTCCAAAGGAAACGATGTGCTTTCTCGCCG
CCATCTTGTTTTAGAATGAGAATCATTTTCGGTTCCAGTTCCTGCGGTCT
TTTTTTCATCCAATCAGATCGCGCGATTTCACTTTCGCTTTCTCTAGTCC
AATAAGAATACGGGAATTGAGTCATGTGACATCTATATTGGGAAACCCGC
GCAGATATGAGCAAGGGAACCATGTTGGCCATCCCTACTGAAAATTTCAG
ATCAAAAGAAACAAGGAATCAATTCCTGTAACTCAAAGAAAATTGGAAAA
AGCTGGTTTTTGACTGTTTCTGATCCTAAAGTGCTAGTTTTTGGCAATTC
TTTGCCAAATCGATTTTCGCATTTCGCCATTTTAACCTTTTAGGCAAACG
CACGTGGCGGAGCAGCACAAACTTGTCGAACAAAATTGGTTTATCGAACT
GATCGAAGCGAAACCCATTGATCGAACTTAACCGTACACTCACAATATCT
TTTAAAAATCTTAGAGTTCAATTAATTTTTTTAATCAAACTTTAACCGTT
CGATGGAGTTCGATTAGTTCGATTGTTCGATTGGTTCGACAAGTTCAATT
GATTGGGTCTGGACACACCGGAGCCCAACTTGTCATTACAGCCGAGCGAA
GCAAGGTTTGACGGTTACAAATTTTTAGAGGGAGCACACTGCAACAGAGA
GCCCTGAAATTTTGCACAGACACCCTTGATTTAGAATAAACTATTGGCTT
CCAATAGTTTCCAGTTCCAAACATAACCACTCTCCCCCACAGGAGCCCAA
CTTGTCATTTCGGCCGAAGCAGGCCGAAATGAGGTTTGATAGTTACAAAT
TTTTAGAGGGAGCACACTGTGACGGAGAGCCCTGAAACTTTGCACAGACA
CCCTTGAGAATAAACTCTATTGGCTTCCAATAATTTCCAGTTCCAAATAT
AACTGCTCTCCCCCACATGAGCCAAACTTGTCCTTTCGGCCGAAATGAGG
TTTGACGGTTACAAATTTTTAGAGGGAGCACACTGCGACGGAGAGCCCTG
AAATTTTGCACTGACACCCTTGAAAATTCACTAAAACTCCAAAACGAATA
TCAAACAAATATCAAACGTCAAACGTAGAATATCAAACCAACTTCAACTT
AATTCCTTTTTGACCTTTTTGATTTTTTCAATTTTTGATTATTTCGATCA
TATCAGTTAGGGTCAGGGTTGGAGCTCAAAACATTGCGTCATTATTTAGA
TGATCTGGAATGGACGAGCACCAACTTAAAAGGGAAATGGTCAAGGGCAC
TATAATGTAGTTTCTAACCTGAGGTGTAATTTGATATTTTCTTTTGCGAG
AACTCTAAAAAAAAAGTGCAAAAAATAATGTCATAATAACTAAAAATGGA
AAAGAATCCGCTCCTTTGAGTTTGATTTCCAGCAAGCATACCCCCTGAAA
TTCACTATTGGGTGTCAAAAGATCTTTATTTACTTGCACGCAATTTTGAC
ACACATATTTTCATGCGTTCGTAGTTCTTTTCCCGTCTTTACAGACTGCA
ATCATGTAGGGTGGTACCCATGTACAAATGTAATGAGCTAGTCGATTACA
GTTCGAGCAGGTTAGACTTTCTTCGTTTTGGTCGTCAGTACAGGATGAAG
GACTACAAAGCGGATTTGGAATATTTCTATTCCTCGTGGACGTCATGATG
GATGGTTATGGTGATGTTTAAGTTGAATTGGTTGATGTTTTTGATGAATT
TGAGTGGGTCTAGTAGCGATTTTTCATGATTTTTTTCAGAAAAACTCAGA
AAATTTTCAGAAGTTTTGATTACTGTAAATCATCACAAAAATAGGATTTT
TTGTTTTTTGCTTATTTCATTGAAATTTCAAAACTTTGGTGGGATACATC
TTTGGTAAAGTTTGAATAGAAGTTAATTAAGCAATCTTGAGAAGTTCAAG
TTTTAGTTTTAGTGGCCTCATCAATGATGACGTCATGATTCGTAATCAGT
TTTGTAGTTTTCGAAAAAATGAGCAAAAAAACAATTAGGTTACACATCAG
GTTATAAACTTACTACATCATAGTACCCTTCATATTCAGTCATTTGTTGT
TTGGTCAATTTCTGTCCACTAATGTGATCTAACTAATCTAAATGGTAAAT
TTAAGCATAGTCTGTATAGAAAACCCTGGTCTGGAAGCTTATTGTCTAAA
CTTTTTATTAGCTTTTTCCTTTGTTAATATCAAAAGATAAAGATAAATAT
CGATTTGCTCAGTTTTTGATCACATTTCCAAATACTCCTCTTGGGATTGG
TTTAAAAATTTAATCATGTGATCAAAAAGTGAGCAAAATTAATTAATTTT
TCAATGATAGTTCAGGTAAAAAACAATAGAAAGAAACAAAAGACTTCCAG
ACCGGGGTTTTTATACGGACTATGATTTAAGACATGTCATAACTTAACTG
AGAGAGAAATTCCTTTTCAAATTACAGATTACTGCATGTCTGTCGTCTCT
ATCTAACATCAAAAAGAGAATCAAGAATCTAAAATTTTTGCGTGGACAAA
ATTTTGTGAATCGTCCTCATTTTCACAAGTTTTCTTTCATCTTTTCCTAA
GAAGAAAGGGAGGCCAATTTTGGGAATTTTAAATTTTTTTTGTTAGGACT
AATTTTTACAAAAAAACAAAAAATTTGCAAAAATTAATCCACATAAACTT
TAATCCACTTAAGGTAGATTGTCATTTTACGAGTAAGGCTCACATATTTC
CAAAGGGAACTCAAGACATGAAAATCTGGACATTGGTTTTGGTGTTATGA
AACATGGAAAAGTATTTCTTAGCATTGAGTGAACTTCTCCGAAATTCATA
TGTCTGGTGAAAATTTATTTTCCACTTATAAACGTCCACAAGGTATACTC
CACTCCCCCAAAATGTCTAATTGACACTATTTGTGGCAAGTTTGAGTTTG
GATGTCTCCCCTGGATGAACTTAAAACAGAATGATAAAGTGCTTTTCCAG
GCTTTCCAAAGCTTTTAAAATTATTAAAAAACATATTATACAAATCTCTC
AATCCGAAAAAAGGAAAACATAAACTGTCACCAGTAATATGATAAAAATG
GTAAGTTAAGCTTAGATAAAAAAATTAAACTTCCCCTGGGAAATTACCCT
TCAACAATGTGTATTAAATTATCTTGCTATGTTATCAGTACAATAATTTT
GTCTTATTATCAATCTTAATTTCTTATCTTACTAGTATTATTTTGGGGAT
ACTAATTTACCGAAAGATAAATTCATGAAAGAGAAAGTCAAAGAAGATGA
TGGCTGTATCCTTTTCCACCTGAAGTTAAATTAATTTTAATTAATTTAAA
ATTTTATTAAGATTTATCAGATTTTGAATCAACTCTGTTTCTGATATATT
TGTCTGAAAATTCACAAAAGCGATGTGCACTTACTTTTTTTTATTTTTAC
ACTGGAGTTAAAATCGTTTTAATATTCGTGTATTTATTATTTATTTTCAT
TAAAAAGTATCTTCTTTAACTTCATCACTCCGTCACAAAACAGGGATCTC
TGTAGAATGTTTGACAACATTTAACCGCTTGAAGGTAAAGAATCATTATT
TTTTCTTGTATTTGATGGTCAAACACAACAGATAATTCTATCTATTATTG
GAACTAATTTTTTCGTCAAAATCGCGAAAATTTGATCCCGCGAAAAATTT
AGAGAGTTGAAAACCGCGAAATACAATTTTTTCCAATTTCATCAAAAAAT
TTGAAAAATTCCTAGGAAAATGAAAGAAATTTGTCCAAAAAAGGGCAAAA
CCGCGAAAATTAAAACCCGCAAAAATTCCTGAATGGAAAAAACTTAGAAA
AATTAAAACCCGCGAAATGCAATTTTTCAGATATTTTTTTTCGACCGCGA
AAATTAGTTCCCGCAAAAATTAGTTCCAATAAGGTATGTAAAGAAGAAAT
CGCTTGAAAAGTTGATATGTTGAGTTCATCTTGTTTTAATGTTTATCTAA
CAAATGTCCTCTAGTAATCAGTTAAGATGATTTCTGTGTTTCACTTGACC
TTCTTCTATTTTAGCAACTCTCTACAGACTTTGAAGAAATCTGCAAGGCA
TTGAAAAAGTCAGACTCTGGATTACTCGAGGTAACTCTTTTGATTTGAGA
ACTTCTGCATTTGAAAGTCTTTTCACTTTAAGTGTGCACTAATTTTTGCA
AATGAAGTTTTTTTTCTCAAAATTAAAGTGCTCTGAATTGTCTTTTCAAC
AGAAAATAATTTATTAGATTTAAAGCATCGATCAAAAAATGGCAAGCAAA
CCAAGAGTTAGTGCACACTAAACAGGCGGACTTTATTCAATTGTAATAAT
ATTTATCCATCCATTTACTCTAACTAACAATAGGCAAAGTATATTCTTGA
CAAGTTGAGATATCAGATAACTACACTACTTGCTTCTGCTTGCTAAATTC
CTTCAATGTATTATTAGGATTGTTGTCTTTGGACTAAAAAAAAACCCTAT
TAACTAATTAAGTCAATTTTTACTCAACTGTTAGATTAATGAAACTGATT
TCAAAATCAGGAGGTCGAAAGACAAACCAGTCCCTGACTTGGACGATCCA
ATGGTAGTCAAAACAAAGAAGATGAAAACTCTATATATGGTAAGATTCAG
ATAAAAAGTGCCTTTAGCCTCCCTTCAGGGATTCAGCCCCCCCCCACCAA
ATAAACCAGACGTTAGAGGGGAGCTGAGATTTAGCGTTAATAAAGGTAGC
AAGCCTTGATAGGAACCTAAATCATTGGGGGTACCATGATTCCTTTCCTC
CACCCTGCTTCAGCTTTATACCTCTGTTTTTCAAATGGAGTAAATGAAGG
TGTTTAACGCTCTTATTTTTTCAATTTCAGAAAGGATTTCCAAAGGATTA
TACAATGGATCAAATCTCTGACTTTTTACGAGAACATGGTGCAGAGGTTA
TAAAACTTATTCCAAATCAACTATTTAGCTTTATCTGTTTTTTAAAAAAC
ATTCATTTTAAGGACATTTGTTTCAAATCAATTAAAAATATCTTTTAAAA
TCTTTGCCTAGCATCTAATGAGTAAATCGATTTAATGAAATTTCTTACAA
TTTCTTATTGTCCATATATTTTTATTCCAACATTTCTTCCTTTACTTGCA
GTCTGTGTTCATAAAGATGCGAAAGAGAGATGACTTCGAATTCAAGGGAT
CTATCTTTACTGAGGTGCAGACGCAAGAACAAGCTGATGCCTTTCTGGAG
AAGAAAGATCTGAAGATTGGAGAAGAAGAAGTTATGCAGATAATGAAAAG
GTATACTCCTCTCCTCGAAAGCCCCCTTCCTCCGGTAAATTGGAGCTGAG
TTGTTTCATGAAGATTCTTGAATTGAAAATCTTTAGTAATAAAATGTTAT
ACAACAGGCTTCAAAATTTTATTAATGTAATTTTGGTCACATTAACTTTT
TAAAACGTCTTGTTTTCTTCGTTAACGTGGGAATGAAAATTTTACTGACA
AATTTCAAAGTTTTGAACTTCCTCTGGTCTATTTAATATTTCCNAATCAA
CTATTTAGCTTTATCTGTTTTTTAAAAAACATTCATTTTAAGGACATTTG
TTTCAAATCAATTAAAAATATCTTTTAAAATCTTTGCCTAGCATCTAATG
AGTAAATCGATTTAATGAAATTTCTTACAATTTCTTATTGTCCATATATT
TTTATTCCAACATTTCTTCCTTTACTTGCAGTCTGTGTTCATAAAGATGC
GAAAGAGAGATGACTTCGAATTCAAGGGATCTGTCTTTACTGAGTTGCAG
ACGCAAGAACAAGCTGATGCCTTTCTGGAAAAGAAAGATCTGAAGATTGG
AGAGGAAGAAGTTATGCAGATAATAAAAAGGTATATCCTCTCCTCGAAAG
CCCCCTTCCTCCGGTAAATTGGAGCTAGAGTTGTTTCATGAAGATTCTTG
AATTGAAAATTTTTAGTAATAAAAATGTTATACAACAGGCTTCAAAATTT
TATTAATGTAATTTTGGTCACATTAATTTTTTAAAACGTCTTGTTTTCTT
CGTTAACGTGGGAATGAAAATTTTACTGACAAATTTTGAACTTCCTCTGG
TCATGATGAAACCTATTAACAGTATGTATTCTATTTAATATTTTTCCCCT
TCATTTACAGAGAGGATTACTTCGAAATGAAAAGTCAAGAAAGACGAGGC
AAAAATGCTGAAGAACAACAGTACGTATCAAACACTATGAAATTTTTAGA
AATTGTCTTTACTTTAGTCAAGTCCCAGATCGACCTAATCGGCAATTCAG
GGGAATTGTATTTCTGAAAAATTACTAATTTATTTTCCCTGAGAAGTTTT
TCCTTTGAAAGTTTCCCATAGTTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013741XLOC_013741Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024473-exon-sc0000499-1575043694:231147..231363TCONS_00024473-exon-sc0000499-1575043694:231147..231363Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1575043694:224209..224278TCONS_00024473-exon-sc0000499-1575043694:224209..224278Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1575043694:223930..223970TCONS_00024473-exon-sc0000499-1575043694:223930..223970Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1575043694:223384..223449TCONS_00024473-exon-sc0000499-1575043694:223384..223449Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1575043694:222875..222979TCONS_00024473-exon-sc0000499-1575043694:222875..222979Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1575043694:222568..222633TCONS_00024473-exon-sc0000499-1575043694:222568..222633Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1575043694:221634..221782TCONS_00024473-exon-sc0000499-1575043694:221634..221782Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1575043694:221138..221353TCONS_00024473-exon-sc0000499-1575043694:221138..221353Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1510915933:231147..231363TCONS_00024473-exon-sc0000499-1510915933:231147..231363Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1510915933:224209..224278TCONS_00024473-exon-sc0000499-1510915933:224209..224278Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1510915933:223930..223970TCONS_00024473-exon-sc0000499-1510915933:223930..223970Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1510915933:223384..223449TCONS_00024473-exon-sc0000499-1510915933:223384..223449Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1510915933:222875..222979TCONS_00024473-exon-sc0000499-1510915933:222875..222979Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1510915933:222568..222633TCONS_00024473-exon-sc0000499-1510915933:222568..222633Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1510915933:221634..221782TCONS_00024473-exon-sc0000499-1510915933:221634..221782Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1510915933:221138..221353TCONS_00024473-exon-sc0000499-1510915933:221138..221353Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1491911889:231147..231363TCONS_00024473-exon-sc0000499-1491911889:231147..231363Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1491911889:224209..224278TCONS_00024473-exon-sc0000499-1491911889:224209..224278Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1491911889:223930..223970TCONS_00024473-exon-sc0000499-1491911889:223930..223970Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1491911889:223384..223449TCONS_00024473-exon-sc0000499-1491911889:223384..223449Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1491911889:222875..222979TCONS_00024473-exon-sc0000499-1491911889:222875..222979Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1491911889:222568..222633TCONS_00024473-exon-sc0000499-1491911889:222568..222633Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1491911889:221634..221782TCONS_00024473-exon-sc0000499-1491911889:221634..221782Clytia hemisphaericaexon
TCONS_00024473-exon-sc0000499-1491911889:221138..221353TCONS_00024473-exon-sc0000499-1491911889:221138..221353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000499supercontigsc0000499:221138..231363 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.0274	48.8539	69.0469	71.9528	79.5961	61.6843	60.1203	69.9887	77.0631	75.0254	83.0939	99.6958	141.862	129.018	88.9426	98.209	74.4755	90.6535	32.652	34.7339	91.2806	87.8905	92.7667	99.4879	78.0401	110.664	70.1505	95.8897	71.9454	73.9722
Blast
[Close]
BLAST of TCONS_00024473 vs. Swiss-Prot (Human)
Match: LA (Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.407e-43
Identity = 86/200 (43.00%), Postives = 131/200 (65.50%), Query Frame = 2 
Query:  155 MTENK-VEETSDLDKKIIRQVEYYFGDTNLPKDKFMKEKVKEDDGWISVECLTTFNRLKQLSTDFEEICKALKKSDSGLLEINETDFKIRRSKDKPVPDLDDPMVVKTKKMKTLYMKGFPKDYTMDQISDFLREHGAESVFIKMRKRDDFEFKGSVFTELQTQEQADAFLEKKDLKIGEEEVMQIIKREDYFEMKSQERR 751
            M EN   E+ + L+ KI  Q+EYYFGD NLP+DKF+KE++K D+GW+ +E +  FNRL +L+TDF  I +AL KS + L+EI+E   KIRRS  KP+P++ D      K  +++Y+KGFP D T+D I ++L + G + + I+MR+     FKGS+F    + E A  F+E    K  E +++ I+ ++DYF  K++ER+
Sbjct:    1 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKN-RSVYIKGFPTDATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLL-ILFKDDYFAKKNEERK 197
The following BLAST results are available for this feature:
BLAST of TCONS_00024473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LA3.407e-4343.00Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2[more]
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