TCONS_00024423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024423
Unique NameTCONS_00024423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024423 ID=TCONS_00024423|Name=TCONS_00024423|organism=Clytia hemisphaerica|type=transcript|length=371bp
CCCTGATCGATGTTACGTGCCCTCCCCCTTTGTATCCTGAGAGACCTCGC
CCCAGGAagccaaaaataaataaatacataCATATTCCTTTCCCTCAAAG
ATGTATTTCAAAGATTCAATAATTAAGGTTTAACGACAAAATTTATAAAC
ATACttcttaaaataaaattcttggACCGTAATATCAATTTTAAGACACC
ATTTCAACTGTGAAAATGCTCAGAGTTTTTTCAGTTAtgatcttttttat
tttgtcgtTGGAGACGTAgaaccatagaggtataaagaaaacaggagttg
aatgtgtcggtaattggtcgttaaagtcttttgatttcttttataaaatg
tatcaaaggAAATTCTAAGCT
Run BLAST on NCBI

transcript from alignment at sc0000491:191775..192145

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024423 ID=TCONS_00024423|Name=TCONS_00024423|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at sc0000491:191775..192145 (Clytia hemisphaerica)
AGCTTAGAATTTcctttgatacattttataaaagaaatcaaaagacttta
acgaccaattaccgacacattcaactcctgttttctttatacctctatgg
ttcTACGTCTCCAacgacaaaataaaaaagatcaTAACTGAAAAAACTCT
GAGCATTTTCACAGTTGAAATGGTGTCTTAAAATTGATATTACGGTccaa
gaattttattttaagaaGTATGTTTATAAATTTTGTCGTTAAACCTTAAT
TATTGAATCTTTGAAATACATCTTTGAGGGAAAGGAATATGtatgtattt
atttatttttggctTCCTGGGGCGAGGTCTCTCAGGATACAAAGGGGGAG
GGCACGTAACATCGATCAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013706XLOC_013706Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024423-exon-sc0000491-1491911889:191775..192145TCONS_00024423-exon-sc0000491-1491911889:191775..192145Clytia hemisphaericaexon
TCONS_00024423-exon-sc0000491-1510915933:191775..192145TCONS_00024423-exon-sc0000491-1510915933:191775..192145Clytia hemisphaericaexon
TCONS_00024423-exon-sc0000491-1575043694:191775..192145TCONS_00024423-exon-sc0000491-1575043694:191775..192145Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000491supercontigsc0000491:191775..192145 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.321083	0.379526	0	0	0.531976	0	0	0	0	0	1.35514	1.12489	0	0	0	0	27.986	47.791	0.324933	0	1.36438	0.559985	1.89834	4.87051	8.67028	6.67862	0.293933	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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