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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024410 ID=TCONS_00024410|Name=TCONS_00024410|organism=Clytia hemisphaerica|type=transcript|length=767bp
TGATATGACTTGGTTGAACTTGGTGGAGTTGAGCAAACTTCCACAATTCA
CTGACATTCTCAACCAGATCGGACGTAATGAGAAACAGTGGAAAGTTTGG
TTTGACAAGGAGACGCCTGAAGAAGCGGAAATTCCTGATGGTTATCACAT
CTCTCTTGATACTTTCAGAAAACTTCTCCTCATAAGGTCCTGGGCACCAG
ACCGTACTTTATCACAAGCAAGAAAATATATCGAAGAATCATTAGGTCGG
AAATATGCAGAAGGAGTTATCCTTGATCTTCATGAAACGTGGTCGGAGAG
TGACACCAAGACACCTTTGATCTGTTTCCTATCAATGGGTTCTGATCCTA
CTGTCAGTATCGAGCAGTTGGCTAAACGAATGAAGCTAGAATGTCGAGCA
GTATCGATGGGACAAGGTCAAGAAATACACGCAAGACGTTTGATCAACCA
ATCCATGCAAACTGTAtgtctttttggacctaccccggtggggtggaggt
cctataaattaacccatgttcgttcgttcgttagttagtgtgttagttac
cagcttttctcgagattcgctcattagttttttctgatttttggcacaaa
ggtgcacgaccataaaccctcgaatgtgacggagcccgattttctaaaaa
aaatttttttgggcaaatttaggccaaaaaacggcttaaaaacgggtttt
ttggactttgtgaaaaattggatcattaattttttctgatttttagcatg
aaagtagggtacaatca Run BLAST on NCBI transcript from alignment at sc0000491:77344..80894- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024410 ID=TCONS_00024410|Name=TCONS_00024410|organism=Clytia hemisphaerica|type=transcript|length=3551bp|location=Sequence derived from alignment at sc0000491:77344..80894- (Clytia hemisphaerica)
TGATATGACTTGGTTGAACTTGGTGGAGTTGAGCAAACTTCCACAATTCA
CTGACATTCTCAACCAGGTGATGATAATACACAAAACGATTATTTGCTCG
GCATTTAAACTAATAGGGTCAAAAACAATGTTTTGTTGTCTGTTTTTTTA
CATGTTAAAGGTTTTAAACGGAACAAAAATAAAAACAGTCGAAGTTCCTA
GCCTCCCGCTAAAAACCCTAGATTATACTGCCATGAGGTAGGAACCAAGA
ACCATCTAACAGAGTTTGCTTTCTGGATGTTTCTGAATTACACTTTTACC
TTTTACCTTGTTCGGACCGGAGACTAAGTTGAAAAGTGCAAGTTTAGATT
TTTTGTCAGGTTGAGGATGTCCAGGAGGATGAATCGCCGGGTCCATATTG
GCGTAAGCTTTGGATATTTTTCCAAATGGTTTGATCAAAATCGTCCGGTC
CAAATTGGGTTAAGCTTTTGATATTTTTCCACAGATACCAGGACACTTCC
AAGCTTAATGTTGTGCTTCTTTGATATTGATTACCCTATGTCAGATCTTT
CGATGGTTTCTTTAGTACATATTATTTAGTAGTATTGCCTCTACAACGAA
AAAGTGCCCTTGGCCAAGGGTCTTACGGCGAATTTCGCTGGTCCAAGGCA
TGAAAAAAGTTACGATTCGCCATTCGAAAAGTTCGGTTCGCCGCCACAAG
TACATTTTCACGCTAATCAATACACTGCGCTTGCTAAGAATTAGCCGACC
TAGAATCTAGAAATCGCCAGGAGTTAATTTTTCATTCGCCAGTCTACTAA
AAACAAAGCAAAACCCCTGCTTGGCTAAAAAATTGTGTTAGATTCTCATA
CTTATTGTAAAGTCTACATATAATTTTCCTAAACGTTTGTGATAAAGTTT
TGGCTTTAATATCTATAGAGTAACTAGCCGGATGGCGGACGCGCGACTCC
AGTCTAAGAGTAATATAAAAATGACTCTAAGCGTGTGATTAAAGAAAGTG
TATTCATCTGGTGGCTGTCGGCGGAGCCGTGAGTGAGGAAATCTATCAAT
TTTTCTATTTGCGCTAGACCTATAAGGTTGAGCGCCACACCTTCTCTCAG
CTCTTATTATCTGGACCAGATTACAATATAAACCTAGACCGGGGATCGAA
CATACAACCCTTGGATTGTAAGGCAAATGTTCTACCAACTGAGCTACTCG
GCGTAGTGTGTTTACATATTTATTATAAAAACACTGGTCTGGAAGGCTTT
TGTCCCTTTTTATTGTTGAAAGATGGAGTTTCACTGCGATCTGGCCTTGG
AATTATGAAAAAATCGGATTCATGATAATTTTTTGCCCTCACTCTACTAA
AAATGGTCATTTGATGAATTTCTCCATTGAAATGGGTCAGTCTTAATAAT
GTCTTTGGGAATACAACAATTTTTGCTTCATTACAATTTCCTTTGAATTA
ATTTTTGGGCTTGAAAATAAAAATCCCCGACGGGATACATCAAATCCCCG
AAGGGATACACGAGAATCGGAATCCATATTATGAAAAAAAGGTTCATCCA
AAAAACAGGAAATTGCGTTTTAATTCAACATTCTAATGATATTCAAAGGA
TAAAAGTAAAAAAATAAGGTTGCATTGGTTTTTCTGAGTTCTAGGGCGAA
TTTTAGTATAATATTGAATCCGGGCCAAGATCGCCGTGTTTACGTACCAA
AATCAATTTATTTTGCAAATTTTTTGATCATGTGATTGGAAAATAGACCA
ATCCCAAGAGGAGATTTTGGTAACGTGATCAAAAAGTATGTAAATCGCAA
CTTGTCTTTTGTTTGTAACAAAAGAAAATTGAACAAAAAACTAAAACAAT
ACATTGCCAGACCAGTGTTTTTATAATGACTATGGTGTTTACAACATTGA
TATCTTATATAAATATCTTTATAATTTTGCTCACTTTTTCAGATCGGACG
TAATGAGAAACAGTGGAAAGTTTGGTTTGACAAGGAGACGCCTGAAGAAG
CGGAAATTCCTGATGGTTATCACATCTCTCTTGATACTTTCAGAAAACTT
CTCCTCATAAGGTATAACCAAAGTCATATTGCATTGATATGTTAATTGGG
GGCGTACGGGTGTGACGGTGTGTCGGTATTAACCCTTTTTTCTGTCGGTG
TGTAAAGAAAAAAACGATGTTATTTCGGTTTCAAGGGGTCACAAAATAAG
GCTTTTTACGACTTTCGCTGTCGGTTTTGACGGCGATTCAGGTTAATCAC
GTCGGTGTCTCGATGTAGGCGACCCCCAAACACATGTCTTATTTACTTAA
CTATTTAACAAGTCTGCCTGTAAAGGTTGAGAAAGCTCAGTGTAAAGTAA
TTAGAATTTAGAAATAAACGCTCTTTCTTACTACAGGGTACCTAATAAGC
GTCCCCCTAATTAATTTTCGAAAACTTTCCACCNACCCGAAAATATACAA
ATAAATAGTCTAGGTTCTGGATACCAATGGCAATGCTCTCACATATCAGG
TTGAGGTCATTTCATTGATGTCGTCTGACGTTAAAGCAATGATCTCAACT
GAACGTTTGTATAAGGAGGTCGAAATATTGTTTCAAATAAAATTCATATA
AAGAATGATCATTTGAACGTACATAAATGATACAAACAAATACTGCGGTT
TGATTTACAGGTCCTGGGCACCAGACCGTACTTTATCACAAGCAAGAAAA
TATATCGAAGAATCATTAGGTCGGAAATATGCAGAAGGAGTTATCCTTGA
TCTTCATGAAACGTGGTCGGAGAGTGACACCAAGACACCTTTGATCTGTT
TCCTATCAATGGGTTCTGATCCTACTGTCAGTATCGAGCAGTTGGCTAAA
CGAATGAAGCTAGGTAAGATCTATTATGTGATTTGATTTGTGATTTCAAT
AAAGTTGGAATTTTGAGTCTATTAGCTCTAGTTTAGACGGCCTTACAAAA
GCTTTTTGAAGTTTCTTACAATGAGGAAAAATCCTTTTTCCCGGATGTTT
CAAAAGGTAATGATTTTGTTCTACGGTGGAGCCTCCATAACTCGAGCCTC
TACAATTCGAATGATTCCTTAACTCGAACAAAACCTTGCGAATCGTAGCC
GGATGCTCTCTAATTTACTACAAATCTGGTTAACTGTAAAATGAATAAAT
TGCTTACTTTTTCTTTTTACCAGAATGTCGAGCAGTATCGATGGGACAAG
GTCAAGAAATACACGCAAGACGTTTGATCAACCAATCCATGCAAACTGTA
TGTCTTTTTGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAACCCA
TGTTCGTTCGTTCGTTAGTTAGTGTGTTAGTTACCAGCTTTTCTCGAGAT
TCGCTCATTAGTTTTTTCTGATTTTTGGCACAAAGGTGCACGACCATAAA
CCCTCGAATGTGACGGAGCCCGATTTTCTAAAAAAAATTTTTTTGGGCAA
ATTTAGGCCAAAAAACGGCTTAAAAACGGGTTTTTTGGACTTTGTGAAAA
ATTGGATCATTAATTTTTTCTGATTTTTAGCATGAAAGTAGGGTACAATC
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024410-exon-sc0000491-1575043694:80828..80894 | TCONS_00024410-exon-sc0000491-1575043694:80828..80894 | Clytia hemisphaerica | exon |
| TCONS_00024410-exon-sc0000491-1575043694:78834..78952 | TCONS_00024410-exon-sc0000491-1575043694:78834..78952 | Clytia hemisphaerica | exon |
| TCONS_00024410-exon-sc0000491-1575043694:78032..78234 | TCONS_00024410-exon-sc0000491-1575043694:78032..78234 | Clytia hemisphaerica | exon |
| TCONS_00024410-exon-sc0000491-1575043694:77344..77721 | TCONS_00024410-exon-sc0000491-1575043694:77344..77721 | Clytia hemisphaerica | exon |
| TCONS_00024410-exon-sc0000491-1510915933:80828..80894 | TCONS_00024410-exon-sc0000491-1510915933:80828..80894 | Clytia hemisphaerica | exon |
| TCONS_00024410-exon-sc0000491-1510915933:78834..78952 | TCONS_00024410-exon-sc0000491-1510915933:78834..78952 | Clytia hemisphaerica | exon |
| TCONS_00024410-exon-sc0000491-1510915933:78032..78234 | TCONS_00024410-exon-sc0000491-1510915933:78032..78234 | Clytia hemisphaerica | exon |
| TCONS_00024410-exon-sc0000491-1510915933:77344..77721 | TCONS_00024410-exon-sc0000491-1510915933:77344..77721 | Clytia hemisphaerica | exon |
| TCONS_00024410-exon-sc0000491-1491911889:80828..80894 | TCONS_00024410-exon-sc0000491-1491911889:80828..80894 | Clytia hemisphaerica | exon |
| TCONS_00024410-exon-sc0000491-1491911889:78834..78952 | TCONS_00024410-exon-sc0000491-1491911889:78834..78952 | Clytia hemisphaerica | exon |
| TCONS_00024410-exon-sc0000491-1491911889:78032..78234 | TCONS_00024410-exon-sc0000491-1491911889:78032..78234 | Clytia hemisphaerica | exon |
| TCONS_00024410-exon-sc0000491-1491911889:77344..77721 | TCONS_00024410-exon-sc0000491-1491911889:77344..77721 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000491 | supercontig | sc0000491:77344..80894 - |
Blast
BLAST of TCONS_00024410 vs. Swiss-Prot (Human)
Match: DYH8 (Dynein heavy chain 8, axonemal OS=Homo sapiens GN=DNAH8 PE=1 SV=2) HSP 1 Score: 241.506 bits (615), Expect = 2.063e-71 Identity = 113/153 (73.86%), Postives = 128/153 (83.66%), Query Frame = 2
Query: 2 DMTWLNLVELSKLPQFTDILNQIGRNEKQWKVWFDKETPEEAEIPDGYHISLDTFRKLLLIRSWAPDRTLSQARKYIEESLGRKYAEGVILDLHETWSESDTKTPLICFLSMGSDPTVSIEQLAKRMKLECRAVSMGQGQEIHARRLINQSMQ 460
DMTWLNLVELSKLPQF +I+NQI RNEK WK WFDK+ PEE IPDGY+ SLDT KLLLIRSW PDRT+ QARKYI +SL KY E VIL+L +TW ESDT+TPLICFLSMGSDPT I+ LAK++KLECR +SMGQGQE+HAR+LI SMQ
Sbjct: 3805 DMTWLNLVELSKLPQFAEIMNQISRNEKGWKSWFDKDAPEEEIIPDGYNDSLDTCHKLLLIRSWCPDRTVFQARKYIADSLEEKYTEPVILNLEKTWEESDTRTPLICFLSMGSDPTNQIDALAKKLKLECRTISMGQGQEVHARKLIQMSMQ 3957
The following BLAST results are available for this feature:
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