TCONS_00024311 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024311
Unique NameTCONS_00024311
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024311 ID=TCONS_00024311|Name=TCONS_00024311|organism=Clytia hemisphaerica|type=transcript|length=503bp
CATGTCTGAAAAAACGTGAAGCTATTCTCGTCGACCCAGTGGATACTCAG
GTGGAAAGAGACTTGAAACTAATGGAAGAACTGAAACTCGATTTGAAATA
CGCAATCAACACTCATTGTCATGCCGACCATATAACCAGTACCggcattt
tgaaaaacaaaaccaaCTGTAAAAGTATGATCAGTCTGAATAGCGGTGCA
AAAGCTGATATATTACTCAATGATGGTGATCGAATTTCCTATGGTGATAG
GGAAATAGAATGCATTTCCACGCCTGGACATACAGATGgttgtATGACAT
TGGTAAATTATGAAGAACGAATTGCAATGACAGGGGACACACTTCTGATA
CGAGCTTGCGGTAGAACTGATTTTCAACAAGGTCTGTTATccatcaattt
ttcatatttttatgtacaATTCTTTTTCAAAGAGCCATGTCGTTTATCtg
tctgatattccgatggtggattggcggccgcccttGCTAAAGCTCTAAAC
GCT
Run BLAST on NCBI

transcript from alignment at sc0000487:222167..229801+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024311 ID=TCONS_00024311|Name=TCONS_00024311|organism=Clytia hemisphaerica|type=transcript|length=7635bp|location=Sequence derived from alignment at sc0000487:222167..229801+ (Clytia hemisphaerica)
CATGTCTGAAAAAACGTGAAGCTATTCTCGTCGACCCAGTGGATACTCAG
GTATATGAATTGTATGGCAGAGGGGAAACTAAGGGGGATTtcggtacaca
tttttttacctaaaaactATCGAACAATCTCTCTTCTTTCAAATAtcagc
aaaatctttgaaaaaatcctTCAGTTAAATCTGTTTTGGTTGACTTTCGC
TTACTTATTGGCATGTCTGAAAAAACGTGAAGCTATTCTCGTCGACCCAG
TGGATACTCAGGTATATGAATTGTATGGTAGAGGGGGACCTAGGTATCTG
GGAAAATGAAGGGTACGGGTATATACTGcccttaagggtcccttttttgg
ATATTAAAAAACCTGCTAAAGATGGTCAAAACCATAAAATCtaattacac
tctttttttaaaggcataacgtttataagcatacttatgCTCGAATTCGG
TAAAAAgtaagcataatgctaagcatacctccaagctgaaatgcaaaaag
aaaaattgcagcTTTTCTACAAGGCTGACCTTTTAAGGGTCAGACCAAAG
ATTTTTGCCCACGGCgcaaaattacaaagaaaacttttcattctttgagc
cgaatcaatgttccgacttaaaaattcgaaattttcatcttcacccaaag
aaaatcaacaaatcaaaGTCTATAAAgcataaacatatttttttaatttt
gctaaACATATTGAGCCTTGACCCGAATTTCCAAGGTCTATCCAAGTTAT
TAATAAATGGGTCGCTTTCGGAGCCTTTTTTCTTCCATAAATATAGTTTT
AAAACGTGAATTACGCCACCATTCTTGGATGTCAAATTGATTCCAAACGT
TAAGGggcattttttacaatatagtcccaaacaaaaaaaagtgtTCTGCC
AGGTTCCCAAATTTACCATTCGTAtttgacagggtccacttttcaaactc
cagcgagTGGTACCTCCCCTTCGGCTGGCAAGGTCAGGGCTAAGATTAAT
CCATGATGAAATGTAAAATATTAAAAGCATCGTTACTTCTTCTGATTTTT
CAGGTGGAAAGAGACTTGAAACTAATGGAAGAACTGAAACTCGATTTGAA
ATACGCAAGTAGGTATCTTAAAGCTAGATTCCTATAAAAAATAACTTCTG
AATCTCTATGAATAAAAACAgttgaaatttcaaaagcttTGCAGTCgcga
aattgtttttttttaaggaatcATTAAAGCCAGTATATTtgttcatgata
tgcaccactggagagtcttctgaaaacttttaaaattttccactcagtac
atcacttaaacaatagaaaaagtgacgtattgggtggaacaaaaacagaa
aagttgtataaattcgtgaagtcattgcagtggtgcatatcatgaattct
tgaGTCTGCTaaaaaatagtcgaacgtgcgcaacgcactgggctcaactt
cagtagcttCAAGTTAtttataggcccaattgtagaccccaagATATTCA
TCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNgggggtactagggttgcgagctgacgggggggccgcccga
ctttcgaactttgtcCCTTAccggactaaaaaggagaaaacaaaggaaaa
cttTGAGAGAATTGAGAGAAAACTTTAGCGGGACAAACTTGACCAACTTT
AACCAAATTTcaatctttcagggggtaaaaagtggaaattttcctatttt
ttccgacccttagtgggactttggaaatccaaaaaaggtacccttaaggg
cggcacataccataccctccatttgcctaagtactcccggacattgagtt
taaagcccgaagggctagagttcaatctctaatctaagcaagaaaaagtg
aagccttaaaaaatgcgccgtatttttgacgacggattgaatctagcaat
tcctttgtttacgattgatatttttttcgaaattNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNagtttcaatctgtcatttgtgtaaaaac
caggcgagccgctcaaggccgcgcaactttggtaggatttgttggcttca
aatcctaccaagaagattgatttctagcccttcgggtttataCTTCATTG
CCCCCGGGCTCTCTGTTCATTGAAATGTTATATTTAAGTGAAGACATTCC
AGTATTGCATCGAACCATTAAGATACGTCACGAGCTatctcttttgtttt
gatgattggttgaataaCTGCAATCTTTATGCAAGCTCAGCGTTTTTGGa
gcagcgattcagacctcggaaaacataatgtcaatctggctttaaaggtt
ttatttttacataagtcttctgtttcatatcagacacatatttcatatca
ggacagtgtctgtgtattgttatattatgctgatgtaagcaaaaaaaatg
tttttcttttcctctttctgaccaatcttgctccacacccgTGGCAATCC
AATGGGAAAAAGCTTGTGAtttgtgaattgaaattgattagaaagcaaac
gatatcactcttatttaaaaacaaaacctttattaAACTCCAGTGGCAca
tccccgtcggccgtcaaggtcagtggcCATCCGGGTTAATGTCtaaaaaa
tttactttcattTCTTTCAGTCAACACTCATTGTCATGCCGACCATATAA
CCAGTACCggcattttgaaaaacaaaaccaaCTGTAAAAGTATGATCAGT
CTGAATAGCGGTGCAAAAGCTGATATATTACTCAATGATGGTGATCGAAT
TTCCTATGGTGATAGGGTAAGCCAACTAATTTCTGAATCAAAAATTGTAT
TGGGCATCGGGACATCTCATCGACATCATGGCTAGAATTTATTCCGCCCC
TTGCCTGAGAATGAAGTGGCTATAAGGTTGAGCAGTCGGTGGCACCAATG
AATTCCTTTTCTCAAACTATATACGAAATTCTAAActttgctttttaatg
aattttgatGACGCTAAGTCAAGTTAATTGGTAGACTAGAGGATATTGTC
TTCTTTATATTTTACCTTAGCTTTCAATAAATTTAATTACTGTGTcacaa
aaatctgctctcctacaaaaattttgccccccccccttgtctacgctact
gagaGGGtatgttgtcattgtcttttctgatttgatatttttcatgaaGC
AAGGGGAGAGAACACTATGTCCTGGCAGTCCTGGCAATGAAAACAATCTG
CAGAATCCTATATAGATTTAAATGAATGAATTTAGCGATACCTCCTTTAA
CTAAAGcccaaataaataataaaattaataataatttaataataATATGT
CACGTgtattaattttaatttttttcttctccatTTTATTTAAGGAAATA
GAATGCATTTCCACGCCTGGACATACAGATGGTAAGATGGGACGAATTTA
ATATAATATTCtatgcccagctggcacacaacgttattggTCAGCCtcgg
tgacccttcaaatcggttccgcgatttttttcccgctggtgAAGCTCtgg
atcaaaattttgaaacttttaaaaccGATTTCCGAAATCCGATTACCGAT
taccgatctcactttgatttctaaaccttcttccgatcgggttaactttt
tgcgaacttttagcgtgtgttgtttttaacgatcataatgtggtgtttca
agattgCGGCTCAAGCCGATAAAGTTAAAGTGTTgttccaaagtatttcc
agtgtgaATCTGTTtgtctgttgcaagcttcaatttctgtcatttatttt
tctaactcggcaaatcaaacacattattttcatcaaggggattttttttc
tacttcttttgaaggtttaaagccgtttgctcaagtttttgtttatgttg
aattttctgtagctagtttttgcaataaaaacatattattcttgtttgcc
tctagaggggggattgatggtgttataatgctattggaatttgataaagt
atacaaaagtacagctactgtctaaatttgataaagactagATGCAATcg
tgtttttttggacttggacgttgGCTTCAGACGACCCTGCCGATACACCA
TACATTCCGGCGTTATCTTTTGTCTGGTAttttcttcattaaattttcaa
aagtgcGCACCGGACTACACCGGACTGTCTGGTAAATTTTTCTCNcatgc
atattgtaataattatgcatggttttatcattgtttttctgctggactac
ataattattcaacagggtggcctctttgaaaaaaggtctatgaatGGTGA
CAACAGTTATTACATATCTTTCNTCGGAGGAAACAAAGTACACCAGACAC
TACACCGGAACTTTTGTCCAGTGATTTATCCATATATTTGCGCACCTGAC
AAACTGCACCGGAATATCCTGTGTATCGGCAAGGTTGTGGCTTCAGTCAT
ATTATATAAGGCGTATCgcaaaaaattatcgaaaatatttttctgttaaa
gaagcagctacatcttgttgaaagggaatcggCGTGGACTTGTCCGAAtt
taaaaattgagaaaccgtcaaccgtggataaactggttttcggtttactc
tccctTAGCacgcggctcgctacttcgatttgaaaacttgtaaacacaga
gcgNNNNNNNNNNNNNNNNNNNNNNNNACTACTGTAGCTTAAAATTGTTA
ATGGCGACCAGTTACAATTTCTGGTAGGAGCTGCAGAGAATTGTGACAAC
AAGGCtcaaaataacaatttcaagtgggtcagacaaaatgtccgatcagg
gttgctttagcttgaaaattatgatttttgggtcggacatgaagccATTT
GGGACGGACattgtccgatgtccgaccgttatttcgagccctgtgaCAAG
GTGTTATATATTGGAATTTGGTAAAGTATACAGACTAAAATTGTTCTgct
ttagaaatttatgaaggataaaaatatttctcacaAAGTTATATATATAC
TGAAGATGTAATATCAGTCATTTTAAGGAAAGGAAAAGATATGATATATA
AGCAGCTTAAAAAGATCTAAATTAAAAAGACAagaatgtttttgtatttt
tgaagattatacattttttgatttattatttttttgaaatcattcCAATA
TCAGATGAAAAATACAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTAGAAGAAGCTGCAGAGAGTTACGACAAAG
TGTTATTGGGgttttatcaagtaaacaaaaaaagtacagtttctatgtaa
tgaaaactaaaaatggTTCTCTCTGCACTAAAATTACGGCATGTATCTTT
ATTTTGGGTTTgactttttggcaattttcttattttttgtagtataacac
tttggtcagatatggatattgtctacacccaacagaaaaaatgtattata
actGACTAAAATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNACATCCCAAACGAGCGAGGTTC
CTGGACTTTTCAACCGGCAGCTAATTGCAATTGTATCGAACGCTGATCTA
ACATTTGCTCGcatctcatcaaaattattcCTTTCACCCCTTTGACCCTC
TAACCCCTTTGACCCTCTAACCCTCTTAGCTcttttggctgaccttccag
cctcggctggtttatttcaaTGTTCATTTAATGTCACAAGGTCCAtataa
cattagatgaacgataaaacaacgttgtgtgccggctgggcgGGAAGACC
ttcagaaaaatatgggtcggtcggtcggtataataaaaataagtttttta
aaACCTTTGACTCGGAAAATCAAGATCTAAGATATTTATGACTTTTTGAT
GaagctttttcttctttatcgaCGAACAAAGTTCGTGATATTTTCttagt
aattttttaaattcatcttaTTTCTAggataaattaataaattttcaCCG
ATTTCAGTTTTTCAGTAAAAAGCCTATACAGTCCATCCTTCAACTTTGCA
aattcaatgttattttttttcgtttttattacGTTTTTGGACATTACtgt
agatgaacgttgaaacaacgctgtgtgTTAGCTGAGAAGGTTGGCTCTAA
TAGGTtacacacaatgttgtttcgacgttcatctaatgtaACTCGAAAGG
TCACAAGGAACAATTAATTTTACTTATTACGATTACTTCCTGTATTTCCT
TATCGGCCCCTTTTACGCGCCGGCCCTCATTACGCCACatcctaattttg
ggcttacgccaattagggctaCTAAAAACgccaacatttttaaaaatggc
tACTTATACTTCgaattagtaaataatgactaaaatttaaATTAACGCCG
CCTTTAGGTTAAAATTGCACAATCTTGGCCCTTTTAACACCGGCCCTTTT
AACACCGGCCTTtcttacgccacgagcccaaacttaacgccaataagggc
cttTGTAAAAAGGGCCCATAAAGTATTCTATAGgaaactcttttcgctag
aggatgggCAGAAGCCTAACAGAAATGGGAAACAgaaaacacaaaataat
gaataattttttttttaaaggttgtATGACATTGGTAAATTATGAAGAAC
GAATTGCAATGACAGGGGACACACTTCTGATACGAGCTTGCGGTAGAACT
GATTTTCAACAAGGTCTGTTATccatcaatttttcatatttttatgtaca
ATTCTTTTTCAAAGAGCCATGTCGTTTATCtgtctgatattccgatggtg
gattggcggccgcccttGCTAAAGCTCTAAACGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013643XLOC_013643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024311-exon-sc0000487-1491911889:222167..222216TCONS_00024311-exon-sc0000487-1491911889:222167..222216Clytia hemisphaericaexon
TCONS_00024311-exon-sc0000487-1510915933:222167..222216TCONS_00024311-exon-sc0000487-1510915933:222167..222216Clytia hemisphaericaexon
TCONS_00024311-exon-sc0000487-1575043694:222167..222216TCONS_00024311-exon-sc0000487-1575043694:222167..222216Clytia hemisphaericaexon
TCONS_00024311-exon-sc0000487-1491911889:223220..223274TCONS_00024311-exon-sc0000487-1491911889:223220..223274Clytia hemisphaericaexon
TCONS_00024311-exon-sc0000487-1510915933:223220..223274TCONS_00024311-exon-sc0000487-1510915933:223220..223274Clytia hemisphaericaexon
TCONS_00024311-exon-sc0000487-1575043694:223220..223274TCONS_00024311-exon-sc0000487-1575043694:223220..223274Clytia hemisphaericaexon
TCONS_00024311-exon-sc0000487-1491911889:225037..225182TCONS_00024311-exon-sc0000487-1491911889:225037..225182Clytia hemisphaericaexon
TCONS_00024311-exon-sc0000487-1510915933:225037..225182TCONS_00024311-exon-sc0000487-1510915933:225037..225182Clytia hemisphaericaexon
TCONS_00024311-exon-sc0000487-1575043694:225037..225182TCONS_00024311-exon-sc0000487-1575043694:225037..225182Clytia hemisphaericaexon
TCONS_00024311-exon-sc0000487-1491911889:225761..225797TCONS_00024311-exon-sc0000487-1491911889:225761..225797Clytia hemisphaericaexon
TCONS_00024311-exon-sc0000487-1510915933:225761..225797TCONS_00024311-exon-sc0000487-1510915933:225761..225797Clytia hemisphaericaexon
TCONS_00024311-exon-sc0000487-1575043694:225761..225797TCONS_00024311-exon-sc0000487-1575043694:225761..225797Clytia hemisphaericaexon
TCONS_00024311-exon-sc0000487-1491911889:229587..229801TCONS_00024311-exon-sc0000487-1491911889:229587..229801Clytia hemisphaericaexon
TCONS_00024311-exon-sc0000487-1510915933:229587..229801TCONS_00024311-exon-sc0000487-1510915933:229587..229801Clytia hemisphaericaexon
TCONS_00024311-exon-sc0000487-1575043694:229587..229801TCONS_00024311-exon-sc0000487-1575043694:229587..229801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000487supercontigsc0000487:222167..229801 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00667573	0	0	0.327172	0.183884	1.54373	2.82497	2.33355	2.4103	1.08382	1.2613e-08	1.59912	2.44572	3.09764	1.70217	1.78629	0.0171103	3.77162	5.73185	1.78231	0	1.9044e-06	0	0	6.81616	3.31435	0	0	0	0.00295929
Blast
[Close]
BLAST of TCONS_00024311 vs. Swiss-Prot (Human)
Match: ETHE1 (Persulfide dioxygenase ETHE1, mitochondrial OS=Homo sapiens GN=ETHE1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.813e-36
Identity = 68/126 (53.97%), Postives = 91/126 (72.22%), Query Frame = 3 
Query:    9 KKREAILVDPVDTQVERXXXXXXXXXXXXXYAINTHCHADHITSTGILKNK-TNCKSMISLNSGAKADILLNDGDRISYGDREIECISTPGHTDGCMTLVNYEERIAMTGDTLLIRACGRTDFQQG 383
            + REA+L+DPV     RD +L++EL L L YA+NTHCHADHIT +G+L++    C+S+IS  SGA+AD+ + DGD I +G   +E  ++PGHT GC+T V  +  +A TGD LLIR CGRTDFQQG
Sbjct:   44 ESREAVLIDPVLETAPRDAQLIKELGLRLLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLHIEDGDSIRFGRFALETRASPGHTPGCVTFVLNDHSMAFTGDALLIRGCGRTDFQQG 169
The following BLAST results are available for this feature:
BLAST of TCONS_00024311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ETHE13.813e-3653.97Persulfide dioxygenase ETHE1, mitochondrial OS=Hom... [more]
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