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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024162 ID=TCONS_00024162|Name=TCONS_00024162|organism=Clytia hemisphaerica|type=transcript|length=1982bp
GCAACAAAAACAACCACAGAAAATGCAAAAGCGAGAGAAGAGAAAGTCCC
AAGGGACGGACGCAACAAAACAAGGACAAGCAAATGGGAATGCGTGTATA
TATAATTACCCtataattataataaataaTGGCATTTACATAGCCCCtca
caaaatttttaatttttgtaaccttcaaaacataaataaattcctaaata
aatttttaataatttttgattttcattaagTACTATATTTTTGTAGTAAA
ACTATTTTGTTCAAAGGTCTAAGTAATTTTGACTTGTTTGCCAGTTCAAT
TTCGACAGTTCTCGTGAGCCCAGTCCCAGGGATGAGCTTTGTTACTTTCG
CTAAACACCATTCATTTCTAGGTTTCTCATCCTTTAGCAAAACAACATCA
TTGATACTAATGGCATCTTTCAGTTCCTTATGCCATTTACTTCGTTCTTG
TAAAGAATTTAAGTATTCCTTACGCCAGCGCTCCCAAAACTCATTAACGA
GATGCTGGACACGACGCCAATATTTACGACAATATAAATCGACATCACTA
AATGAANTCATTAACGAGATGCTGGACACGACGCCAATATTTACGACAAT
ATAAATCGACATCGCTAAATGAACCAGGAAGGGGGTATACAACTTTCGAT
TTGTGAGTTAGTAGAGTCATTGGCGATATTGGAGTGAGGCTGGTTGAATC
GTTTAAGCATTCGACACTTAGTGGTCTTGAGTTGATTACGTTTTCGACCT
CGGTGATGAGTGTGTGGAACGATTCTTCATGAAGAATTTCGCCATGTTTG
ATCAACATTCCGGACAAGATATTTCGGGCTGTCCGGATTTGTCGTTCCCA
AACTCCTCCATAGTTGCTGGAACTAGGTGGATTTCTCTTCCAGACGACCC
AGTCACCGTTGTGTTTTGATAGAAAATCGGCAATTTTTGAGTGATCCATA
TTCATAAATTCTCTGTAAAGCTGTTTATCAGCGCCGACAAAATTAGTCCC
ATTGTCGGATCTTATCATTCTAATATTTCCCCGTCGAGCGACTAATCGTC
GGAGAGATAAGATAAATGAATCGGTTTCCATGCTGTGGATTCCTTCGATA
TGAACAGCTCGAGATGCAAGACAGGTGAATAGAACGCAGTAACGTTTGAC
TAGTGATCTTCTCACCTTTATGTAGAATGGACCAAAGACGTCGAGGCCAG
TGTAGGTAAACGGTGGAGCGGCTTCAATTCTGTCGATTGGAAGATCGCTC
ATTCTTTGTTGAATTGTAGCCCCTCGTAGGTGCCTGCACACGACGCATTG
ATGGATGACGTGTCGAACCATTGAATTGATATTGATGATCCACAGGCCAT
AGGTGCGAATCTCATTGATCGTCATACCTCGTCCTGAGTGAAATGTGTTG
TTGTGATGGAAACGTACCAAAGGCTTTGTGATGACACTGTCCTTTGGAAG
AATTATGGGATGTTTGATTTCGAAGTCCATGTTGGAACGTTGAAGTCGGC
CACCAACTCGAAGAAGACCGTCTTTGTGGATGAATGGGTTGAGCTTGACG
AGATTATCGTTCAGTTTGATCTTTTCGTCGTTCTTGAGGCGTTGTACTGT
GTTGGCGAAGTATGATCGTTGAACTTCCTGGAAGATCGTCACTTGGGCAA
ACTTTAACTCTTCGACTGTTAGGGGTTGCATCGTTGGCTGTTGACCTCTC
AGAACCATGGAGTGCGTCTTTGATTTCTTGCAGAAGTTGTTGATGTAGCG
TAAGACGAATGCTGTAACACGAATGATTTTAATCCAAGACGACATTCTAC
CTATGACTGATAAGAGAACGTTAGTTTCTACAGCTGCTGTAGCTGCACAA
GTCAGAGTATCGCTACTCTTGACGATCTCAGGATCGTCATCATTGACAAC
GAACTTTGTTGTCGTGACATCGTCACTAAGTGGCTGCCAAAGGAATTGAG
GTCCTTTAAGCCACATATTGATGCGTTCTGTG Run BLAST on NCBI protein sequence of TCONS_00024162-protein >TCONS_00024162-protein ID=TCONS_00024162-protein|Name=TCONS_00024162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp
TERINMWLKGPQFLWQPLSDDVTTTKFVVNDDDPEIVKSSDTLTCAATAA
VETNVLLSVIGRMSSWIKIIRVTAFVLRYINNFCKKSKTHSMVLRGQQPT
MQPLTVEELKFAQVTIFQEVQRSYFANTVQRLKNDEKIKLNDNLVKLNPF
IHKDGLLRVGGRLQRSNMDFEIKHPIILPKDSVITKPLVRFHHNNTFHSG
RGMTINEIRTYGLWIININSMVRHVIHQCVVCRHLRGATIQQRMSDLPID
RIEAAPPFTYTGLDVFGPFYIKVRRSLVKRYCVLFTCLASRAVHIEGIHS
METDSFILSLRRLVARRGNIRMIRSDNGTNFVGADKQLYREFMNMDHSKI
ADFLSKHNGDWVVWKRNPPSSSNYGGVWERQIRTARNILSGMLIKHGEIL
HEESFHTLITEVENVINSRPLSVECLNDSTSLTPISPMTLLTHKSKVVYP
LPGSFSDVDLYCRKYWRRVQHLVNXFI Run BLAST on NCBI transcript from alignment at sc0000476:86891..88872 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024162 ID=TCONS_00024162|Name=TCONS_00024162|organism=Clytia hemisphaerica|type=transcript|length=1982bp|location=Sequence derived from alignment at sc0000476:86891..88872 (Clytia hemisphaerica)
CACAGAACGCATCAATATGTGGCTTAAAGGACCTCAATTCCTTTGGCAGC
CACTTAGTGACGATGTCACGACAACAAAGTTCGTTGTCAATGATGACGAT
CCTGAGATCGTCAAGAGTAGCGATACTCTGACTTGTGCAGCTACAGCAGC
TGTAGAAACTAACGTTCTCTTATCAGTCATAGGTAGAATGTCGTCTTGGA
TTAAAATCATTCGTGTTACAGCATTCGTCTTACGCTACATCAACAACTTC
TGCAAGAAATCAAAGACGCACTCCATGGTTCTGAGAGGTCAACAGCCAAC
GATGCAACCCCTAACAGTCGAAGAGTTAAAGTTTGCCCAAGTGACGATCT
TCCAGGAAGTTCAACGATCATACTTCGCCAACACAGTACAACGCCTCAAG
AACGACGAAAAGATCAAACTGAACGATAATCTCGTCAAGCTCAACCCATT
CATCCACAAAGACGGTCTTCTTCGAGTTGGTGGCCGACTTCAACGTTCCA
ACATGGACTTCGAAATCAAACATCCCATAATTCTTCCAAAGGACAGTGTC
ATCACAAAGCCTTTGGTACGTTTCCATCACAACAACACATTTCACTCAGG
ACGAGGTATGACGATCAATGAGATTCGCACCTATGGCCTGTGGATCATCA
ATATCAATTCAATGGTTCGACACGTCATCCATCAATGCGTCGTGTGCAGG
CACCTACGAGGGGCTACAATTCAACAAAGAATGAGCGATCTTCCAATCGA
CAGAATTGAAGCCGCTCCACCGTTTACCTACACTGGCCTCGACGTCTTTG
GTCCATTCTACATAAAGGTGAGAAGATCACTAGTCAAACGTTACTGCGTT
CTATTCACCTGTCTTGCATCTCGAGCTGTTCATATCGAAGGAATCCACAG
CATGGAAACCGATTCATTTATCTTATCTCTCCGACGATTAGTCGCTCGAC
GGGGAAATATTAGAATGATAAGATCCGACAATGGGACTAATTTTGTCGGC
GCTGATAAACAGCTTTACAGAGAATTTATGAATATGGATCACTCAAAAAT
TGCCGATTTTCTATCAAAACACAACGGTGACTGGGTCGTCTGGAAGAGAA
ATCCACCTAGTTCCAGCAACTATGGAGGAGTTTGGGAACGACAAATCCGG
ACAGCCCGAAATATCTTGTCCGGAATGTTGATCAAACATGGCGAAATTCT
TCATGAAGAATCGTTCCACACACTCATCACCGAGGTCGAAAACGTAATCA
ACTCAAGACCACTAAGTGTCGAATGCTTAAACGATTCAACCAGCCTCACT
CCAATATCGCCAATGACTCTACTAACTCACAAATCGAAAGTTGTATACCC
CCTTCCTGGTTCATTTAGCGATGTCGATTTATATTGTCGTAAATATTGGC
GTCGTGTCCAGCATCTCGTTAATGANTTCATTTAGTGATGTCGATTTATA
TTGTCGTAAATATTGGCGTCGTGTCCAGCATCTCGTTAATGAGTTTTGGG
AGCGCTGGCGTAAGGAATACTTAAATTCTTTACAAGAACGAAGTAAATGG
CATAAGGAACTGAAAGATGCCATTAGTATCAATGATGTTGTTTTGCTAAA
GGATGAGAAACCTAGAAATGAATGGTGTTTAGCGAAAGTAACAAAGCTCA
TCCCTGGGACTGGGCTCACGAGAACTGTCGAAATTGAACTGGCAAACAAG
TCAAAATTACTTAGACCTTTGAACAAAATAGTTTTACTACAAAAATATAG
TActtaatgaaaatcaaaaattattaaaaatttatttaggaatttattta
tgttttgaaggttacaaaaattaaaaattttgtgaGGGGCTATGTAAATG
CCAttatttattataattataGGGTAATTATATATACACGCATTCCCATT
TGCTTGTCCTTGTTTTGTTGCGTCCGTCCCTTGGGACTTTCTCTTCTCTC
GCTTTTGCATTTTCTGTGGTTGTTTTTGTTGC Coding sequence (CDS) from alignment at sc0000476:86891..88872 >TCONS_00024162 ID=TCONS_00024162|Name=TCONS_00024162|organism=Clytia hemisphaerica|type=CDS|length=1434bp|location=Sequence derived from alignment at sc0000476:86891..88872 (Clytia hemisphaerica)
ACAGAACGCATCAATATGTGGCTTAAAGGACCTCAATTCCTTTGGCAGCC
ACTTAGTGACGATGTCACGACAACAAAGTTCGTTGTCAATGATGACGATC
CTGAGATCGTCAAGAGTAGCGATACTCTGACTTGTGCAGCTACAGCAGCT
GTAGAAACTAACGTTCTCTTATCAGTCATAGGTAGAATGTCGTCTTGGAT
TAAAATCATTCGTGTTACAGCATTCGTCTTACGCTACATCAACAACTTCT
GCAAGAAATCAAAGACGCACTCCATGGTTCTGAGAGGTCAACAGCCAACG
ATGCAACCCCTAACAGTCGAAGAGTTAAAGTTTGCCCAAGTGACGATCTT
CCAGGAAGTTCAACGATCATACTTCGCCAACACAGTACAACGCCTCAAGA
ACGACGAAAAGATCAAACTGAACGATAATCTCGTCAAGCTCAACCCATTC
ATCCACAAAGACGGTCTTCTTCGAGTTGGTGGCCGACTTCAACGTTCCAA
CATGGACTTCGAAATCAAACATCCCATAATTCTTCCAAAGGACAGTGTCA
TCACAAAGCCTTTGGTACGTTTCCATCACAACAACACATTTCACTCAGGA
CGAGGTATGACGATCAATGAGATTCGCACCTATGGCCTGTGGATCATCAA
TATCAATTCAATGGTTCGACACGTCATCCATCAATGCGTCGTGTGCAGGC
ACCTACGAGGGGCTACAATTCAACAAAGAATGAGCGATCTTCCAATCGAC
AGAATTGAAGCCGCTCCACCGTTTACCTACACTGGCCTCGACGTCTTTGG
TCCATTCTACATAAAGGTGAGAAGATCACTAGTCAAACGTTACTGCGTTC
TATTCACCTGTCTTGCATCTCGAGCTGTTCATATCGAAGGAATCCACAGC
ATGGAAACCGATTCATTTATCTTATCTCTCCGACGATTAGTCGCTCGACG
GGGAAATATTAGAATGATAAGATCCGACAATGGGACTAATTTTGTCGGCG
CTGATAAACAGCTTTACAGAGAATTTATGAATATGGATCACTCAAAAATT
GCCGATTTTCTATCAAAACACAACGGTGACTGGGTCGTCTGGAAGAGAAA
TCCACCTAGTTCCAGCAACTATGGAGGAGTTTGGGAACGACAAATCCGGA
CAGCCCGAAATATCTTGTCCGGAATGTTGATCAAACATGGCGAAATTCTT
CATGAAGAATCGTTCCACACACTCATCACCGAGGTCGAAAACGTAATCAA
CTCAAGACCACTAAGTGTCGAATGCTTAAACGATTCAACCAGCCTCACTC
CAATATCGCCAATGACTCTACTAACTCACAAATCGAAAGTTGTATACCCC
CTTCCTGGTTCATTTAGCGATGTCGATTTATATTGTCGTAAATATTGGCG
TCGTGTCCAGCATCTCGTTAATGANTTCATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024162-exon-sc0000476-1491911889:86891..88872 | TCONS_00024162-exon-sc0000476-1491911889:86891..88872 | Clytia hemisphaerica | exon |
| TCONS_00024162-exon-sc0000476-1510915933:86891..88872 | TCONS_00024162-exon-sc0000476-1510915933:86891..88872 | Clytia hemisphaerica | exon |
| TCONS_00024162-exon-sc0000476-1575043694:86891..88872 | TCONS_00024162-exon-sc0000476-1575043694:86891..88872 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000476 | supercontig | sc0000476:86891..88872 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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