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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024113 ID=TCONS_00024113|Name=TCONS_00024113|organism=Clytia hemisphaerica|type=transcript|length=2533bp
NNGTGcatatacaaattttttacgccacacgcccagatctagagaaagga
tgctacactccctttcgggcgcttcgcgccctcaaaacggtcgttccgca
aataGGCGACCTATATTATCCTGTTATCAATATTAGATGGCTTTTCTGCG
ATTTAATGTTCATAGGAAAGGACGTCCAACTGACAGAGAGAAGCTCAATG
AGTATTTAGCATCCAAGAAAAAACATACTGTTACTAACTACTACTCAAAT
AAAAACGATGACAGTAATAAAGAAAATGACAAATACTCTTTCCCAGGAAA
CAAAAACAGCGAGGTGGAAATAACCTATATCAAACCATCTACTAAAGAAT
GTGGTATACAAGTTAATCCTGAAGATGTAACAAGCAAAAAACTGCTACAA
AATCAGTTCACTCAAACTGAACCAGATACCAAACTTATGGGGCTAAAAAT
TGATAATTCAAAACTACAAATTCAGCTACGTAACAAGGAAAGAAGATTGA
GTGAACTTAAAAGTATGGTTGATCACGCATATGCAGAAGATATATATCTC
ATAATTTCTTTATATATTACAAGGATCTGACAAACACCCAGAAAGCATTG
ATGAAAAATATGCTTAAAAGCTTTCCTCGATTTGACGATTACAGCAAATA
GTTTTGGATTGAAATGTATGAAAATGTTCCAAAAGAGCAGCTTGACAAAA
TTGTCGAAAcatttaattgtcctttgagtAAAAGAACTGTCAGTGATTGG
AAAAAGAAGcttgaaaatgcaaaaaaagagCAACCTTCTTCAGATGAGCA
AGAGCTGGTTCATCACTTAAAGGTTAAGGTTGAGGAATAACATTGGTATT
GAATGTTACTTTTAAACAGTTTTCCATGTAAAAAACAATGGCTCATAGTG
TTTTCAGAGGGGTCTGAACTCACCCCTTATAAATTCCACCAAACCCCCAC
CCTATATGCATCCTCCTCTCATTGGGGGGGGCAAGGTTAATGACTTACCA
AACACGTGGCACTtaagggttggtttttcaaGGCTCAACTAGTACAGGCT
AGTGCACCATAAGGGTGTTTTGACCagtgctgcactgtaagggtatgttt
tGATCAGTGCTGCACTGTGAGGGTATGTTTTGACCAGTGCATTGctgtaa
gggtatgtttttatCTCTACCTGAACTGTAATGGTAGCAAATAACCTCTT
GTTCctatgaaaatttttcaaatgaaatgaattCTTAAATTATTCAATAG
CTCACACTCTTGTACATCTGTATATTTCCCATCTGTATCTCTCAAAAATT
AGCTTTTTAAAAGTGAGGTGTTCCATTGAAAAGGTCTGATGAAGAGAATT
GTGTGCTGTAAGGACGTGTACTTTTTGTCGATTTCAGCACTGGAAGGATG
TCAAATTTTATAGCTTATTTCTTCACTGTAAGCGTCCGATTTTGAAAGTC
ATTTTTTGgaccgaacgtatggtcgtctTCAGAACGTCTGCCCCCCCCTG
GGATCCCCCCCATATCAACTTCCCCTGACTTCCCCTACTTTTAAGTAATC
CCCTCCCTTAAAGCTCAAATCCCACATTTTATTCAGAAAAAGTTCTATCC
AGGCTTCCTTAGAAAGTTAATCCCCCTTAAATAAAGGGGGCTCCCATCAA
ACCTTGTAAATAGTGTTATATATTTTAACATTGTATGTATCACCTTCTAT
TATTTTGCTTACCATAAACAGTGACATAATTTATTAACAAAAAAGAAGCa
aaacagaaaagaacattATTGGAAGCATGATTAATTAATTAGAATAAATC
AGAAggtttgaaaatttcaaggacTTGTACTGCACTGGCTTTATTAGAAC
TAACCtattgttttctctttttttaggAAAGGCTAATAAGAAATGATAga
taaaaaaatagttttggAGAAGTTCGAAAACTTTACGAGAACATCATTAC
AATATGGCCAGCAGGCATTTGAAATATTGCAAAAATTCTACtatgaagaa
attgaaaaagactGGCAATTGCAAGGTTCCGTTTTCTTAATGTTTTTATT
CTGCATTATCATGGTGTTGGTCAAAATTCAGTGGAATAAGTATGGACTTG
CCATAATGGGCATGGAACTTTCTAGTCAACCCTCAACTGACACTGTTGAT
GGTAGGGGTTTGGACACTGTCCATGAGTATCCTGATGAAGACCCGCtgac
ttttgtaaaaaagaaaaccaatTAATTCAATCATGctggatttcattttt
gttgtttaGTGAGAAAGTATTTTTTTGGATCTATTTTAATGGGATGTTCA
GAGAGGCAACTGTTAAACAGTTGTTTTGAGACAACTGAAGTAGTTTGTCT
GCGTGTGGCAGTTGCTTCCCCATTGTTTACAGCAAACAAAGCCCTTAGGG
CTACAAAAAGGGACCAatggtttctttgttttgtttattccCCTGGTTAG
ACTGGAtgggatggagtttttataagataccttataataattggtcattt
gaagtaataaaaatgatgcgttctttagaaaaa Run BLAST on NCBI protein sequence of TCONS_00024113-protein >TCONS_00024113-protein ID=TCONS_00024113-protein|Name=TCONS_00024113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MAFLRFNVHRKGRPTDREKLNEYLASKKKHTVTNYYSNKNDDSNKENDKY
SFPGNKNSEVEITYIKPSTKECGIQVNPEDVTSKKLLQNQFTQTEPDTKL
MGLKIDNSKLQIQLRNKERRLSELKSMVDHAYAEDIYLIISLYITRI Run BLAST on NCBI transcript from alignment at sc0000476:1325..8100+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024113 ID=TCONS_00024113|Name=TCONS_00024113|organism=Clytia hemisphaerica|type=transcript|length=6776bp|location=Sequence derived from alignment at sc0000476:1325..8100+ (Clytia hemisphaerica)
NNGTGcatatacaaattttttacgccacacgcccagatctagagaaagga
tgctacactccctttcgggcgcttcgcgccctcaaaacggtcgttccgca
aataGGCGACCTATATTATCCTGTTATCAATATTAGATGGCTTTTCTGCG
ATTTAATGTTCATGTAAGTTTAAAATGTTCATGTTCATGACTTTTGCTTT
CAAGCGAGCTTCTTCTATTCTCTAGTTTGTCATTTGTTTCCCAGTGCCAG
TGTGTTCCAGTCAAGTCCAGGGTAGCTATCAGGCTATCTGGCTATTCTAT
CTGTCTATTAGTCCAGAAGCTGCAGCTCAACATTATGCCTTTAATGAGGG
GAAAGGTGAAGGTAGAGATcgcagcgccatcattcaaatcagaaagcgaa
gagaGCTTTTAAATGCAGGAAATTTCTGACTATGCATGTAGCTATGCTTT
TAGCTATAAACTATTGAGCTACGGTACAAGATTATAAATATTGTGCAGAT
TATTATATCACTCTTGACTTGATGCTGTGCAAGTGTTATATAGCGAGGCA
GGGTATACGTATAACGGTATAGCTGCTGGGCGGGGGAAGTATTATTTAGG
AGAGGATAAAACCTCAGGCTCAGGCAAGTTAAGGCCTGTGCAAAAAATTC
GATAAATCGTAACGGCTGTGGCGGCCAGTTATTCCACCCCTTtttatggg
aaaatttttcgttattttcactcTTCATGTTAATACCTTTCAGaaaagtc
ctgggccaaaaattctGTTTCTGCTATTTAGGGAAATTTAAGGCAAAACA
CTTTttggctgacatcagcaaaaattttaaatactaATAACCCCCGGAAT
ATTTATTgaaatgagctcaaattttgtacgAAAGTAGGgtggataaatat
ctttcatttccaaaaaaaatgtttcaaaagattgatgacgtcagcaaaaa
tcaacaattttcgttttttctaaaaaaatgctgacatcatcaattttttg
gaaaCAAGAGATGTTTATAAATCCTACCTTTGTACCAAATTTGAGCTCAT
TTGGATAAATATTCCAGTTTccttaattttatcaaaatggcaAGGCTGGA
AACAcaatttttggcccaggactttttgaaaaggtattAATATGACGagt
gagaaaaatcaaaaatttttcccaaaaagccaaagcattatttgattgat
tcgttaattttttacacaggccttaacttgcccgagacattgaaaaaatt
ttcttggtaaCCTTCTGAAACATATTTTTGAACACTCCTGTCCTGTTATT
TTTCTGGTTAAAGTGGCTGGAATCTTATAGGAGAACCCCTTCTGAACAAC
TCTGATCTAGGTTACACACAATATTTCTttagggaccattcaaaaagtac
gtacgctcaaaatcagtgaaaattgaCCACCctctccccccttgtacgct
ctCGTACGCTTTGGCATTACCCTTTCGTGTATGTACGCTTTTGAAATAAC
CCCccctcaaaaattttagatcatATTAAATAAAGAGTATACAAAGGTAA
ATTAGNGACCCCCCccctcaaaaattttagatcatATTAAATAAAGAGTA
TACAAAGGTAAATTAggggattttgagaaaaattgaaacaatttcAACTT
CTGTTTGTCTTTGTTGATGATATAAAAATGTCAAAGCGTACATACCTTTC
TACCTgacctccccctccccctcgtacgCTTTTGGTAGtaccctccccct
ccccctcagagcgtacgtacttttggAATGGTCCCTTATTGCTATtggaa
aatcatattttttcaagGCTGCTCACACTGTAAGTTGGTCTCTAATGTTG
GCATCTGTCTtataattttgacacccttctttagagataggaacaataga
aagtgaggaaggtcagaatcgctgattgactttgattagcacgatgagag
gaaaaaatctttagtctatcagtgatttcgaccttcctaccgggtgtccc
agaaaaaagttccgctctttgaagtgaattttctcgagttctatgagCTT
TTAAATAATAAAGCTTTTTGCATTGCAAAGaagaaggataaacttaaatt
ttgaggggtcatttattaaattaagtcaacatgatcaaaagttatagcct
aaatgttaaaacatcacttttcaaaaaagtcaaaaaaagacgaaaaaaga
gGGGATTAAATTCATTGTAagacaaagacacaaaaagctttGAAAACTCT
TGGTAAGATTTTGATGAATGTTTGGAGTTTGAAAAAGCATCGTGCCCCTT
GATTATGCCCATGGGAGCTCGTTAAATtagacaaagaaaagaaaaggaat
taacaataaaataaagacACCTTAAAGAACTGCATGGAAAAAACTTTGAC
CTTAAAATAAATTGGCAAAAGAAGtgctttctttatgatgatttaATCTC
ctcttttttcgtctttttttgacttttttgaaagtgatgttttagcattt
aggctataacttttgatcaagttgacttaatttaataaatgacccctcaa
aatttaagtttatccttcctctttccaatgcaaaaagattcattATTTAA
AAGCTCATAGAGCTCgataaaattcacttcaaagagcggaacttttttct
gggacacccggtattaTTCCTATCcataaagaagggtgtcgaaattagaa
gacggatgtcgacattagaccaacttacgataCTCTTCTGTGTGCTGTGG
AACTGGCATGTCAAAATGTTAATCTATTCATCatgtcaaaaaacaaaatt
tattggTATCAACCCCCTAATGCCCTAATGACAACAAACTGATGGTTCAG
AGATTAAAACGAGTCGACAACTTTCTTTATCTTGTAAAGTTACACTGAAA
CACGACAGATCACATGCAATACTGTgccgtgagatcaggtaacttgcatc
attggaGACTAACATGCAttatagccctcaaatgaatgacttagctggtc
attaaaatacaaagctaaatcaaaacaaaaatcgtagagtagagctgctt
tgaaattttgctgctatgattggtcagtcatttgatggctatgcaagttt
ccctccactgatgcaagttacccgacttcaagGTACGAACGTCAGAAAGC
CAAAGCCTGGAATGCTCTTCATTCTCTTTGCAAAGTATGGGATAAAAAGT
ATGGAAATCGAACATCTCAAAATCTATCAAAACTGCCAAAACTGTTAGGT
GGCTCAAAAACTTGGACCTTTTTAATATCTCAATAACAAAACGCCACGTC
AGACATGTCCAATCCAATAATCGCCTTTTGGTccgaaaaattaaacaaac
tacatgtgtttttttataagtattattgcacttgtaagcatatTCTGGGC
TCAGATACAGGGGAAAATTAAGCATACAGTATGGCAAGCATTACCTTGAG
CCTAcgttttttcctgattttggctttttttggctggaatttttagtctt
ttcagtatttccctaaatttttgctttggatataagcatccctcaagcat
tCAGCCTTactaagctttcgacctaagcatcgtTTTCGGATNGAGGCCCC
GAAAgtaattgggtcggacatggtgtccgactagaatcgatttgggtcgg
acatttcagcaattgggtcggacaatgtccgatgtccgaccgttatttcg
agccctggaGCTGGACCATACCAGCCAAATCAAAATACATTTAacaataa
atattttgtaattttatatTTCTGAAAGGTCTAATCATAACTAGTACCTN
CGACCTAAGCATcgttttcggatttttatatgcttattaaaaaaaacatg
ttataCAAATCTAAAAATTGGTGAAGGGTATTTATTCGCCCTATTTTTAG
ATTAAAATATGTTTGCCTGTTTGGATGTTTCCAATTTGtgaccttctttc
tatcatcagagctgcagggctcgaaataacgatatttaggtggtcggaca
cattgtccgatcaaaaattgatttgggtcggacatgtcctaaggctttta
aagtaaaatgggtcgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTAATAGAACAAAATACTTAATTACCCAAAACATGCCCTTGCACC
TAACTATagatttatattattttatttgaGTTATATTTGGCCTAAGTcta
gttatttttttattaactcttatttgaaatatttacagtTACAATTAATG
ATGACTAAGCTAATGTTTAAAATTGAAGATTATTATAATTAGGATATTCT
TTTTAGAGGAAAGGACGTCCAACTGACAGAGAGAAGCTCAATGAGTATTT
AGCATCCAAGAAAAAACATACTGTTACTAACTACTACTCAAATAAAAACG
ATGACAGTAATAAAGAAAATGACAAATACTCTTTCCCAGGAAACAAAAAC
AGCGAGGTGGAAATAACCTATATCAAACCATCTACTAAAGAATGTGGTAT
ACAAGTTAATCCTGAAGATGTAACAAGCAAAAAACTGCTACAAAATCAGT
TCACTCAAACTGAACCAGATACCAAACTTATGGGGCTAAAAATTGATAAT
TCAAAACTACAAATTCAGCTACGTAACAAGGAAAGAAGATTGAGTGAACT
TAAAAGTATGGTTGATCACGCATATGCAGAAGATATATATCTCATAATTT
CTTTATATATTACAAGGATCTGACAAACACCCAGAAAGCATTGATGAAAA
ATATGCTTAAAAGCTTTCCTCGATTTGACGATTACAGCAAATAGTTTTGG
ATTGAAATGTATGAAAATGTTCCAAAAGAGCAGCTTGACAAAATTGTCGA
AAcatttaattgtcctttgagtAAAAGAACTGTCAGTGATTGGAAAAAGA
AGcttgaaaatgcaaaaaaagagCAACCTTCTTCAGATGAGCAAGAGCTG
GTTCATCACTTAAAGGTTAAGGTTGAGGAATAACATTGGTATTGAATGTT
ACTTTTAAACAGTTTTCCATGTAAAAAACAATGGCTCATAGTGTTTTCAG
AGGGGTCTGAACTCACCCCTTATAAATTCCACCAAACCCCCACCCTATAT
GCATCCTCCTCTCATTGGGGGGGGCAAGGTTAATGACTTACCAAACACGT
GGCACTtaagggttggtttttcaaGGCTCAACTAGTACAGGCTAGTGCAC
CATAAGGGTGTTTTGACCagtgctgcactgtaagggtatgttttGATCAG
TGCTGCACTGTGAGGGTATGTTTTGACCAGTGCATTGctgtaagggtatg
tttttatCTCTACCTGAACTGTAATGGTAGCAAATAACCTCTTGTTCcta
tgaaaatttttcaaatgaaatgaattCTTAAATTATTCAATAGCTCACAC
TCTTGTACATCTGTATATTTCCCATCTGTATCTCTCAAAAATTAGCTTTT
TAAAAGTGAGGTGTTCCATTGAAAAGGTCTGATGAAGAGAATTGTGTGCT
GTAAGGACGTGTACTTTTTGTCGATTTCAGCACTGGAAGGATGTCAAATT
TTATAGCTTATTTCTTCACTGTAAGCGTCCGATTTTGAAAGTCATTTTTT
GgaccgaacgtatggtcgtctTCAGAACGTCTGCCCCCCCCTGGGATCCC
CCCCATATCAACTTCCCCTGACTTCCCCTACTTTTAAGTAATCCCCTCCC
TTAAAGCTCAAATCCCACATTTTATTCAGAAAAAGTTCTATCCAGGCTTC
CTTAGAAAGTTAATCCCCCTTAAATAAAGGGGGCTCCCATCAAACCTTGT
AAATAGTGTTATATATTTTAACATTGTATGTATCACCTTCTATTATTTTG
CTTACCATAAACAGTGACATAATTTATTAACAAAAAAGAAGCaaaacaga
aaagaacattATTGGAAGCATGATTAATTAATTAGAATAAATCAGAAggt
ttgaaaatttcaaggacTTGTACTGCACTGGCTTTATTAGAACTAACCta
ttgttttctctttttttaggAAAGGCTAATAAGAAATGATAgataaaaaa
atagttttggAGAAGTTCGAAAACTTTACGAGAACATCATTACAATATGG
CCAGCAGGCATTTGAAATATTGCAAAAATTCTACtatgaagaaattgaaa
aagactGGCAATTGCAAGGTTCCGTTTTCTTAATGTTTTTATTCTGCATT
ATCATGGTGTTGGTCAAAATTCAGTGGAATAAGTATGGACTTGCCATAAT
GGGCATGGAACTTTCTAGTCAACCCTCAACTGACACTGTTGATGGTAGGG
GTTTGGACACTGTCCATGAGTATCCTGATGAAGACCCGCtgacttttgta
aaaaagaaaaccaatTAATTCAATCATGctggatttcatttttgttgttt
aGTGAGAAAGTATTTTTTTGGATCTATTTTAATGGGATGTTCAGAGAGGC
AACTGTTAAACAGTTGTTTTGAGACAACTGAAGTAGTTTGTCTGCGTGTG
GCAGTTGCTTCCCCATTGTTTACAGCAAACAAAGCCCTTAGGGCTACAAA
AAGGGACCAatggtttctttgttttgtttattccCCTGGTTAGACTGGAt
gggatggagtttttataagataccttataataattggtcatttgaagtaa
taaaaatgatgcgttctttagaaaaa Coding sequence (CDS) from alignment at sc0000476:1325..8100+ >TCONS_00024113 ID=TCONS_00024113|Name=TCONS_00024113|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at sc0000476:1325..8100+ (Clytia hemisphaerica)
ATGGCTTTTCTGCGATTTAATGTTCATAGGAAAGGACGTCCAACTGACAG
AGAGAAGCTCAATGAGTATTTAGCATCCAAGAAAAAACATACTGTTACTA
ACTACTACTCAAATAAAAACGATGACAGTAATAAAGAAAATGACAAATAC
TCTTTCCCAGGAAACAAAAACAGCGAGGTGGAAATAACCTATATCAAACC
ATCTACTAAAGAATGTGGTATACAAGTTAATCCTGAAGATGTAACAAGCA
AAAAACTGCTACAAAATCAGTTCACTCAAACTGAACCAGATACCAAACTT
ATGGGGCTAAAAATTGATAATTCAAAACTACAAATTCAGCTACGTAACAA
GGAAAGAAGATTGAGTGAACTTAAAAGTATGGTTGATCACGCATATGCAG
AAGATATATATCTCATAATTTCTTTATATATTACAAGGATCTGAATGGCT
TTTCTGCGATTTAATGTTCATAGGAAAGGACGTCCAACTGACAGAGAGAA
GCTCAATGAGTATTTAGCATCCAAGAAAAAACATACTGTTACTAACTACT
ACTCAAATAAAAACGATGACAGTAATAAAGAAAATGACAAATACTCTTTC
CCAGGAAACAAAAACAGCGAGGTGGAAATAACCTATATCAAACCATCTAC
TAAAGAATGTGGTATACAAGTTAATCCTGAAGATGTAACAAGCAAAAAAC
TGCTACAAAATCAGTTCACTCAAACTGAACCAGATACCAAACTTATGGGG
CTAAAAATTGATAATTCAAAACTACAAATTCAGCTACGTAACAAGGAAAG
AAGATTGAGTGAACTTAAAAGTATGGTTGATCACGCATATGCAGAAGATA
TATATCTCATAATTTCTTTATATATTACAAGGATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024113-exon-sc0000476-1491911889:1325..1487 | TCONS_00024113-exon-sc0000476-1491911889:1325..1487 | Clytia hemisphaerica | exon |
| TCONS_00024113-exon-sc0000476-1510915933:1325..1487 | TCONS_00024113-exon-sc0000476-1510915933:1325..1487 | Clytia hemisphaerica | exon |
| TCONS_00024113-exon-sc0000476-1575043694:1325..1487 | TCONS_00024113-exon-sc0000476-1575043694:1325..1487 | Clytia hemisphaerica | exon |
| TCONS_00024113-exon-sc0000476-1491911889:5731..8100 | TCONS_00024113-exon-sc0000476-1491911889:5731..8100 | Clytia hemisphaerica | exon |
| TCONS_00024113-exon-sc0000476-1510915933:5731..8100 | TCONS_00024113-exon-sc0000476-1510915933:5731..8100 | Clytia hemisphaerica | exon |
| TCONS_00024113-exon-sc0000476-1575043694:5731..8100 | TCONS_00024113-exon-sc0000476-1575043694:5731..8100 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000476 | supercontig | sc0000476:1325..8100 + |
Blast
The following BLAST results are available for this feature:
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