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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023850 ID=TCONS_00023850|Name=TCONS_00023850|organism=Clytia hemisphaerica|type=transcript|length=2263bpRun BLAST on NCBI protein sequence of TCONS_00023850-protein >TCONS_00023850-protein ID=TCONS_00023850-protein|Name=TCONS_00023850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=580bp MANAAKSEREYDSQSNEIPLPPGMNAHWFAREGINVLLNGGVNHAQQLFKRun BLAST on NCBI transcript from alignment at sc0000463:122667..137443- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023850 ID=TCONS_00023850|Name=TCONS_00023850|organism=Clytia hemisphaerica|type=transcript|length=14777bp|location=Sequence derived from alignment at sc0000463:122667..137443- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000463:122667..137443- >TCONS_00023850 ID=TCONS_00023850|Name=TCONS_00023850|organism=Clytia hemisphaerica|type=CDS|length=27888bp|location=Sequence derived from alignment at sc0000463:122667..137443- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023850 vs. Swiss-Prot (Human)
Match: TT39C (Tetratricopeptide repeat protein 39C OS=Homo sapiens GN=TTC39C PE=2 SV=2) HSP 1 Score: 410.609 bits (1054), Expect = 3.715e-133 Identity = 225/549 (40.98%), Postives = 332/549 (60.47%), Query Frame = 3
Query: 156 FAREGINVLLNGGVNHAQQLFKKFRSCSPLLSAGASLVDFITAAMTFEDEKMSQALNSLKGTIKMCQ------VDSLYEGVLSKKPSEKWSP--VERIERMIIWADCELFLAFLMFLKQSVVDFVKAGYHMRRAWKMYEKCHREIHGVDPEVXXXXXXXXXXRTPSPVE-------VSAEDKIILEAALSFGYGLIQVAFSIVPTALLKVCEVFGFQANRDIGLDALTVSSNSTDMKAPIARLTLLWYHTVVRPFCALDGNNIEKGLAEASVILDASEKEFPTSAIFLYFKALICRLRGQLEEALKILDQTMETSKEQREIALLCHYDKGWCHLMRLEWESAAPCFAKLKEQSRWSEAYYTYLLAVTEGALGRSGVAYEYLKSVPKLVVRK-TQLENFLNRKATMYKKKEPTRNEYAILGLELLYLWNALPQCSPQTVQEMLKELESCGVPSMQPLKLLIMGSLYQVNGERETSMQYFQIASRKPDGKPADAHVVPYAMYEMGMTHSTNMNEIDRAKELLYKAKDGFSGYDFENRLNFRIHAALNNIED 1754
A GIN+LLN G + QLFK++R+ SPL+S GAS V F+ A MTFE+EKM A + LK T K+C+ ++++ + K +P V+R++R II ADC+++LA L F+KQ + ++K G+ +R+AWK+Y KC+ +I+ + E+ + K ++S + + + VS E L+ A+SFGYGL + S+VP LLK+ + GF +R GL +L +S S DMKAP+A L LLWYHTVVRPF ALDG++ + GL EA IL E +P S++F++FK I RL Q+ AL +E + +QREI +C Y+ GWC ++ L ++ A F +LK +SRWS+ YY YL AV +GA G A K V KL RK Q+E F +KA ++K+ PT+ + +E+LYLW ALP CS +Q M + S+ LK L++G++++ G E ++QYFQ A + + + +V PYA YE+G + R + LL +AK+ FSGYDFENRL+ RIHAAL ++ +
Sbjct: 32 LALAGINMLLNNGFRESDQLFKQYRNHSPLMSFGASFVSFLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDVRKSAPSMVDRLQRQIIIADCQVYLAVLSFVKQELSAYIKGGWILRKAWKIYNKCYLDINALQ-ELYQKKLTEESLTSDAANDNHIVAEGVSEESLNRLKGAVSFGYGLFHLCISMVPPNLLKIINLLGFPGDRLQGLSSLMYASESKDMKAPLATLALLWYHTVVRPFFALDGSDNKAGLDEAKEILLKKEAAYPNSSLFMFFKGRIQRLECQINSALTSFHTALELAVDQREIQHVCLYEIGWCSMIELNFKDAFDSFERLKNESRWSQCYYAYLTAVCQGATGDVDGAQIVFKEVQKLFKRKNNQIEQFSVKKAERFRKQTPTKALCVLASIEVLYLWKALPNCSFPNLQRMSQACHEVDDSSVVGLKYLLLGAIHKCLGNSEDAVQYFQRAVKDELCRQNNLYVQPYACYELGCLLLDKPETVGRGRALLLQAKEDFSGYDFENRLHVRIHAALASLRE 579 The following BLAST results are available for this feature:
BLAST of TCONS_00023850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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