TCONS_00023837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023837
Unique NameTCONS_00023837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023837 ID=TCONS_00023837|Name=TCONS_00023837|organism=Clytia hemisphaerica|type=transcript|length=483bp
ttttaaatcaagttatcaaatgtttcacattttgtacattattcaacatt
attagtctactctgtttcagtacatctcttacatctgttaacccactatc
tagctaagctctattggctgaccttccagcctcggctggtttattccTTC
TAAAATAGAAGATTTAAACCTTTTCCGAAATCATATGAAACTCTTTCGAA
ATCtggtttacaaaaataattcttAAAGCTTCATTTTTTTAGAAGGTTCG
TCTTCCCTCTTGTAAAAATATATCTTTACAAAGAATAATATGTCTGTATG
CGAATTGAAAtgaccttaaaaattaaaaaaatttcaacatctCAACGCTT
ATATACCCTACTATTACAAAATGGTTCTGAACATACGTACAGTATACTTA
GCTCTTAAACTTGAAAAGTATTACAACATGACCGTATGCGATAATatcga
aaaagaaaatttttcaaaaaagtgcaaTCGTCC
Run BLAST on NCBI

transcript from alignment at sc0000462:227553..228035

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023837 ID=TCONS_00023837|Name=TCONS_00023837|organism=Clytia hemisphaerica|type=transcript|length=483bp|location=Sequence derived from alignment at sc0000462:227553..228035 (Clytia hemisphaerica)
GGACGAttgcacttttttgaaaaattttctttttcgatATTATCGCATAC
GGTCATGTTGTAATACTTTTCAAGTTTAAGAGCTAAGTATACTGTACGTA
TGTTCAGAACCATTTTGTAATAGTAGGGTATATAAGCGTTGagatgttga
aatttttttaatttttaaggtcaTTTCAATTCGCATACAGACATATTATT
CTTTGTAAAGATATATTTTTACAAGAGGGAAGACGAACCTTCTAAAAAAA
TGAAGCTTTaagaattatttttgtaaaccaGATTTCGAAAGAGTTTCATA
TGATTTCGGAAAAGGTTTAAATCTTCTATTTTAGAAggaataaaccagcc
gaggctggaaggtcagccaatagagcttagctagatagtgggttaacaga
tgtaagagatgtactgaaacagagtagactaataatgttgaataatgtac
aaaatgtgaaacatttgataacttgatttaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013394XLOC_013394Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023837-exon-sc0000462-1491911889:227553..228035TCONS_00023837-exon-sc0000462-1491911889:227553..228035Clytia hemisphaericaexon
TCONS_00023837-exon-sc0000462-1510915933:227553..228035TCONS_00023837-exon-sc0000462-1510915933:227553..228035Clytia hemisphaericaexon
TCONS_00023837-exon-sc0000462-1575043694:227553..228035TCONS_00023837-exon-sc0000462-1575043694:227553..228035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000462supercontigsc0000462:227553..228035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.810046	0.56097	0.459255	0.172944	0.710909	0.551923	0.499404	0.312722	0.789697	1.54633	0.266084	0.264663	0.345978	0.455011	0.952564	0.256452	0.305989	0.304437	0.140793	0.289941	2.73164	1.36933	2.63295	2.59487	0	0.124442	2.3197	0.471902	3.50062	4.19937
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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