|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023694 ID=TCONS_00023694|Name=TCONS_00023694|organism=Clytia hemisphaerica|type=transcript|length=540bp
CAGGACAGCAAGAAGTTCAGCATCACTTGATCGATTCTCATCaactgacc
ataaaacaaacaaaaaaatgaagattgtCATTGTCTCTCTTGCTCTCTTG
GCTGTTGCCGCCGCCCTCAAAGTTGGAACAGAAACTGGTACCACACCACC
AGCTGTCCCATGCCCAGATTCCCTCTGCCATGGAAAAGCCGACGGAAACT
TTCAATACATCTACTATGGACGACTCAACAAAAACTACTTCCTCCAATGC
TCAAACGGATTAGCTTACTGTCAAGCCTGCTGGCCATTGTCCTTGGAATT
CAGCGAAAACTGCAACCAATGTTTGTACAGCAAACATGACGACTGTGTCA
CCACACAAAAATGGCACCCAGCCACCACCTTCGCTTGCCCAGACAAATGC
CCAGCCCGTGGACCACACTTCAGTGGAAACATTGAAGACCCACACAACCC
ACACCAATACATCGCTTGCTTCCACGGACAAACCGTCGGATGCATCGCTT
GCCCAAAGGGATTGGAATTCAACGAGGAATGGAACGCCTG Run BLAST on NCBI protein sequence of TCONS_00023694-protein >TCONS_00023694-protein ID=TCONS_00023694-protein|Name=TCONS_00023694-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
RTARSSASLDRFSSTDHKTNKKMKIVIVSLALLAVAAALKVGTETGTTPP
AVPCPDSLCHGKADGNFQYIYYGRLNKNYFLQCSNGLAYCQACWPLSLEF
SENCNQCLYSKHDDCVTTQKWHPATTFACPDKCPARGPHFSGNIEDPHNP
HQYIACFHGQTVGCIACPKGLEFNEEWNA Run BLAST on NCBI transcript from alignment at sc0000458:64961..65681- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023694 ID=TCONS_00023694|Name=TCONS_00023694|organism=Clytia hemisphaerica|type=transcript|length=721bp|location=Sequence derived from alignment at sc0000458:64961..65681- (Clytia hemisphaerica)
CAGGACAGCAAGAAGTTCAGCATCACTTGATCGATTCTCATCAACTGACC
ATAAAACAAACAAAAAAATGAAGATTGTCATTGTCTCTCTTGCTCTCTTG
GCTGGTAAGTTAAATATAAATTCTAAAAACATTTTTCATTTTCGTTCTTT
TCAACCTCTGCTTGAACTCTGATCAACTGAACTCTGATCAACCTCTGTGA
GAATTCTATTGTAGGTATAAACTAGAGTTTTTGTTTCACATTAGAACTCA
ACAAAATAATGAAAACAATCTCTTTTCAATTACAGTTGCCGCCGCCCTCA
AAGTTGGAACAGAAACTGGTACCACACCACCAGCTGTCCCATGCCCAGAT
TCCCTCTGCCATGGAAAAGCCGACGGAAACTTTCAATACATCTACTATGG
ACGACTCAACAAAAACTACTTCCTCCAATGCTCAAACGGATTAGCTTACT
GTCAAGCCTGCTGGCCATTGTCCTTGGAATTCAGCGAAAACTGCAACCAA
TGTTTGTACAGCAAACATGACGACTGTGTCACCACACAAAAATGGCACCC
AGCCACCACCTTCGCTTGCCCAGACAAATGCCCAGCCCGTGGACCACACT
TCAGTGGAAACATTGAAGACCCACACAACCCACACCAATACATCGCTTGC
TTCCACGGACAAACCGTCGGATGCATCGCTTGCCCAAAGGGATTGGAATT
CAACGAGGAATGGAACGCCTG Coding sequence (CDS) from alignment at sc0000458:64961..65681- >TCONS_00023694 ID=TCONS_00023694|Name=TCONS_00023694|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at sc0000458:64961..65681- (Clytia hemisphaerica)
TTGCCGCCGCCCTCAAAGTTGGAACAGAAACTGGTACCACACCACCAGCT
GTCCCATGCCCAGATTCCCTCTGCCATGGAAAAGCCGACGGAAACTTTCA
ATACATCTACTATGGACGACTCAACAAAAACTACTTCCTCCAATGCTCAA
ACGGATTAGCTTACTGTCAAGCCTGCTGGCCATTGTCCTTGGAATTCAGC
GAAAACTGCAACCAATGTTTGTACAGCAAACATGACGACTGTGTCACCAC
ACAAAAATGGCACCCAGCCACCACCTTCGCTTGCCCAGACAAATGCCCAG
CCCGTGGACCACACTTCAGTGGAAACATTGAAGACCCACACAACCCACAC
CAATACATCGCTTGCTTCCACGGACAAACCGTCGGATGCATCGCTTGCCC
AAAGGGATTGGAATTCAACGAGGAATGGAACGCCAGGACAGCAAGAAGTT
CAGCATCACTTGATCGATTCTCATCAACTGACCATAAAACAAACAAAAAA
ATGAAGATTGTCATTGTCTCTCTTGCTCTCTTGGCTGTTGCCGCCGCCCT
CAAAGTTGGAACAGAAACTGGTACCACACCACCAGCTGTCCCATGCCCAG
ATTCCCTCTGCCATGGAAAAGCCGACGGAAACTTTCAATACATCTACTAT
GGACGACTCAACAAAAACTACTTCCTCCAATGCTCAAACGGATTAGCTTA
CTGTCAAGCCTGCTGGCCATTGTCCTTGGAATTCAGCGAAAACTGCAACC
AATGTTTGTACAGCAAACATGACGACTGTGTCACCACACAAAAATGGCAC
CCAGCCACCACCTTCGCTTGCCCAGACAAATGCCCAGCCCGTGGACCACA
CTTCAGTGGAAACATTGAAGACCCACACAACCCACACCAATACATCGCTT
GCTTCCACGGACAAACCGTCGGATGCATCGCTTGCCCAAAGGGATTGGAA
TTCAACGAGGAATGGAACGCCAGGACAGCAAGAAGTTCAGCATCACTTGA
TCGATTCTCATCAACTGACCATAAAACAAACAAAAAAATGAAGATTGTCA
TTGTCTCTCTTGCTCTCTTGGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023694-exon-sc0000458-1575043694:65578..65681 | TCONS_00023694-exon-sc0000458-1575043694:65578..65681 | Clytia hemisphaerica | exon |
| TCONS_00023694-exon-sc0000458-1575043694:64961..65396 | TCONS_00023694-exon-sc0000458-1575043694:64961..65396 | Clytia hemisphaerica | exon |
| TCONS_00023694-exon-sc0000458-1510915933:65578..65681 | TCONS_00023694-exon-sc0000458-1510915933:65578..65681 | Clytia hemisphaerica | exon |
| TCONS_00023694-exon-sc0000458-1510915933:64961..65396 | TCONS_00023694-exon-sc0000458-1510915933:64961..65396 | Clytia hemisphaerica | exon |
| TCONS_00023694-exon-sc0000458-1491911889:65578..65681 | TCONS_00023694-exon-sc0000458-1491911889:65578..65681 | Clytia hemisphaerica | exon |
| TCONS_00023694-exon-sc0000458-1491911889:64961..65396 | TCONS_00023694-exon-sc0000458-1491911889:64961..65396 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000458 | supercontig | sc0000458:64961..65681 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
|
