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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023693 ID=TCONS_00023693|Name=TCONS_00023693|organism=Clytia hemisphaerica|type=transcript|length=1117bp
CAAACTTAttataaaaattcttataaaaaagtcttttaTCGACATAAAGA
TCATTAGAAATGTTTATAGAATAGCTCACATTACATTCGGCGCACTCTTC
TCCTTTGGGAAGATTTAAGCAACTGGTAATCTTTTAAACCAATTCATGAG
AATTAAGCTGTATGGTGGAGTGTTTTTAAAGGCCTATTATTCTCTCGCGG
CTTTTTGTTCGATATAAATAGGCGTACGTACTTCAAAATGTCTCTTCACT
TgctaaaagcataacaaagTGGTGTAGGTAGTATCGTTTTTCTACGATTT
TGAAATTATCTGCAAACATGGTTAATCTTGGAGATGTTTTTCCAGACTTC
AAAGCCTCCACTAGCGAAGGTGAAATGCAATTCCACGAATACATCAAAGG
ATCatgGGCCATCCTTTTCTCTCACCCTGCCGATTTCACTCCTGTTTGCA
CCACCGAATTATCGCAAGCACAACGTCTAGCTCCTGAATTTCAAAAACGT
GGCGTCAAAATGGCTGCTGTTTCATGCGATAGTGCTGAATCACATAAAGG
ATGGATCAATGATATCAAATTTTACACTGAAGGCAAATTCAGTTATCCAA
TCATTGCTGACCCTAAACGAGAACTTGCTGTTAGCCTTGGAATGATCGAC
CCTGATGAAAAGGATGCAGCTGGTATGCCATTGACTGCAAGAGCCGTTTT
CGTTATTGGTCCCGATGGTAAACTCAAACTGTCTCTTTTATACCCTGCTA
CTACCGGACGTAACTTCGACGAAATTATCCGTGTTATCGATTCATTACAA
CTCACTGCTTCAAAGAAAGTCGCTACACCCGTCAACTGGCGACAAGGGGA
CGAAGCTATGGTTATTCCAACCTTAAAGGCCGAGGAAGCCGATGCGATGT
TCCCAGGATATCGAAAAGATGAAGTGCCCTCTGGCAAAGCTTACATGAGA
TTCACTAAGaattattaaaaagattttcaaggaaaatttgttgtgatttt
ttttacttcatGGGTATATAGTTTTAATCGATTCATTTTTTTGTTATCAT
TCAGTTGTAAATTCATTATTGCAAATAATTATTTAACATTGCAAATTGCT
CATGTTTTCTTCCTTTC Run BLAST on NCBI protein sequence of TCONS_00023693-protein >TCONS_00023693-protein ID=TCONS_00023693-protein|Name=TCONS_00023693-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MVNLGDVFPDFKASTSEGEMQFHEYIKGSWAILFSHPADFTPVCTTELSQ
AQRLAPEFQKRGVKMAAVSCDSAESHKGWINDIKFYTEGKFSYPIIADPK
RELAVSLGMIDPDEKDAAGMPLTARAVFVIGPDGKLKLSLLYPATTGRNF
DEIIRVIDSLQLTASKKVATPVNWRQGDEAMVIPTLKAEEADAMFPGYRK
DEVPSGKAYMRFTKNY Run BLAST on NCBI transcript from alignment at sc0000458:58930..62682- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023693 ID=TCONS_00023693|Name=TCONS_00023693|organism=Clytia hemisphaerica|type=transcript|length=3753bp|location=Sequence derived from alignment at sc0000458:58930..62682- (Clytia hemisphaerica)
CAAACTTATTATAAAAATTCTTATAAAAAAGTCTTTTATCGACATAAAGA
TCATTAGAAATGTTTATAGAATAGCTCACATTACATTCGGCGCACTCTTC
TCCTTTGGGAAGATTTAAGCAACTGGTAATCTTTTAAACCAATTCATGAG
AATTAAGCTGTATGGTGGAGTGTTTTTAAAGGCCTATTATTCTCTCGCGG
CTTTTTGTTCGATATAAATAGGCGTACGTACTTCAAAATGTCTCTTCACT
TGCTAAAAGCATAACAAAGTGGTGTAGGTAGTATCGTTTTTCTACGATTT
TGAAATTATCTGCAAACATGGTTAATCTTGGAGATGTTTTTCCAGACTTC
AAAGCCTCCACTAGCGAAGGTGAAATGCAATTCCACGAATACATCAAAGG
ATCGTGAGTACAACTTCTTATGTTTACTTTATTAATCTAATTCATATTTT
GAGCCAAATATTTATATAATTGTTTTTCTCTGAAAAGAATTGAAATAGTA
AAGGTCAGAATTTTTTTTCGATGGCAAATATTTTCAATTTTACTGTCTTT
CCACCTTGCATTTACTTCTAAACACTTTAAATGAAGAATGGATAAGTCAA
TGAGCTGGAGCTCAGTTGCTCGACTCCCCTTTGCCTTTGATGGCCTTTTG
ATTAACTCTGATGCGGAAAAAAGTGGATTATTGATGGCCCGAGTAATCTG
CTTCTGAGCTTCGAAACATATTTAAACTTTGCAATGTACCGTTGAACCTT
TTCTGGTCATATACTTTAAGCGTACAATCTTTCGCAGGCAGGAACTTTCG
CGATTTTCGCGAATTTTGGCCCTTTTCGCGAAAGTAAATGTCTTTAAAAA
TTCTAGGTAGGGCCATTAGCGAAAATTTATGCTCGCGATAAATTTTTAAG
ACGAAATAAAAAATCTGTTAAACTTCAAACTTTGAATAAAATGTAACTTA
TATGGCACTTTTTAGCCTGCTAAAAGACTATTAAGTCAAAGGACAAATGT
TTCAAGCCAATCCAAGAAGTATTTGTCTCGATTTGTCCCTCTAAGCCATT
TTATCATGTGGAAATTCTCAATCTTACGTCTTGATTCGCGAAAGTTTCTG
CTCGCGAAAAATATTTTTCCGTCGAATTCGCGATAGTAAATGTCGTGAAT
TTCGCGATTTTTCGTCCTCGCGAAAGTTTCTGCTCGCAAAAGTTTGTACG
CCTAAAGTAATCCTTTATCTACAAGATGGAAATCTTACACGTAGACGTCA
TTAAAAAGTCATAAAACAGATACAGTTCAGTTCAAGCTGTGCTTTTTATC
AAAAATTGAATGCGCACGCCTCTTAAAGTTGAATTTCTGCAATGCTAGCT
TATTCACATTCTCTGCTGTTTTCACTTCGGACTGCGGCACACCTCGGTTT
GTCATTTAACAATAAAATGTAATTACATTGTCATTATAATGTTTTTTGAC
TGTTATGCATATTATCTTATAAGAACATTAACATGTTAAGCCTATGAAAC
AACTGAATCGGACTCTCATCTTAGAGATAATGTAATATGATACGATGAAT
GAGTCTTGAAGTTGTTTATTTTCATAAGCAATCAATAACAACAACCTTAT
TCAAACAAATAAAAACAAACAAAACTAATCAATTTTACCTTACTGATAAA
ATCCACCAAATCGTTAGATAGATTCTTATAAAAATTCATGACTCTTTGCC
ATTTCAAACGTACCTAATGACACGTCCTTGGTTTTGAGAAAAAATAATAC
AAGTGCTTTCTTATAAGAACATCCAAAATTTTTGAAGCCTTTATTGGATG
TTCTTAACTTTTTGAGATTCAAGCCTAATAATGATCTTAACATATTTCAT
TTTCCCATTTTGTGAGTATTTTTGTTCATTTTCATAAGAAAACTGGTGTT
TTGAGTTGGTGAAGCCTTCACGAAATGTTCTTACTTGTTCTAAACATTTT
GGCTATCGAAGCCTTGTGTTCTTATATAGTTTTTTCTTAGAAAAAAACGG
ACGGTATTGTAATCGATTATTCAGATATATGCTAATTGCATCGTTGATCA
GACTTTAATTAACTAACCTTTTTTTGCAATTTAGAATATAATGACATTAC
CTCAATTTAGAGATAAAGATCTTATCTTACTCCAAAAAAGAATCGTTTAT
AAGAACATTTTTCATATAGGAAAACGTATATAAAATAGCAGCAATTTGAG
GACAAAGCTAAGCAGTGCTGTTTTTTAAGCAATTTAGCAGTCAAGAAAGC
TAGGGTAAAGGACCTAAAATACCTCAAATTTGTTCTTAATTCCAGTCCCA
GACTCGACAGTTCCAAAAAAAGTGAGAACAGTTGAGCCCCAACAAAGGTT
TATGGTTCTTATTGAAAAAAGAGAGATTTTAATTCCCTTATCAAAATATC
TATCAAGAATATGAGAATGCTAAATTGAGTGCGATTGTCATTATTTCGCA
ATCTCGATTTTTATGTTGTCTCATCATGGAGCCAACTTAAATCCTTCTTT
GGCTGATTTCTTACGTCAACTTCTTCCAGAAAACATTTTATACACTTCAG
ATGTTAAAAGGTTGCAAAGGTTCCACAGTTATACACGCATTTTTGTTATA
AGAATGAACTTTATAAGATATTTATTATGAAACTGGCCAAAAGAAAATAT
GTCTAGAATGTCATTTAATAGTTTCCTGCTACAACACTTTGGTTTAATTC
TTACTGTACTTACCAGACTCTTAAAAGATAAGAACTTTATTTTTCTTTCA
GATGGGCCATCCTTTTCTCTCACCCTGCCGATTTCACTCCTGTTTGCACC
ACCGAATTATCGCAAGCACAACGTCTAGCTCCTGAATTTCAAAAACGTGG
CGTCAAAATGGCTGCTGTTTCATGCGATAGTGCTGAATCACATAAAGGAT
GGATCAATGATATCAAATTTTACACTGAAGGCAAATTCAGTTATCCAATC
ATTGCTGACCCTAAACGAGAACTTGCTGTTAGCCTTGGAATGATCGACCC
TGATGAAAAGGATGCAGCTGGTATGCCATTGACTGCAAGAGCCGTAAGTT
CATTATAAATTTTGTCATTTATTTTGGAAACACTCGAAAAAGACTGGTAC
TTACCCTTTCTATTGAGAGTCAAAATTGATAGTTTTGAGTTTAACCCTGA
AAATATTCGTATGGCAGTGGTGCTTACAACAAATACGTCAATGTCGTAAA
TTTATTTTTTTTGACCTTGCAAAAATTTATACACCTAAAGTAATAAGTTT
GACACACAATCAGTTTTATCAAAAAATAACTATCCACGTTACCATTTGGC
CCTAAATTTATATTCCAAAATGCATTTTCAGGTTTTCGTTATTGGTCCCG
ATGGTAAACTCAAACTGTCTCTTTTATACCCTGCTACTACCGGACGTAAC
TTCGACGAAATTATCCGTGTTATCGATTCATTACAACTCACTGCTTCAAA
GAAAGTCGCTACACCCGTCAACTGGCGACAAGGGGACGAAGCTATGGTTA
TTCCAACCTTAAAGGCCGAGGAAGCCGATGCGATGTTCCCAGGATATCGA
AAAGATGAAGTGCCCTCTGGCAAAGCTTACATGAGATTCACTAAGAATTA
TTAAAAAGATTTTCAAGGAAAATTTGTTGTGATTTTTTTTACTTCATGGG
TATATAGTTTTAATCGATTCATTTTTTTGTTATCATTCAGTTGTAAATTC
ATTATTGCAAATAATTATTTAACATTGCAAATTGCTCATGTTTTCTTCCT
TTC Coding sequence (CDS) from alignment at sc0000458:58930..62682- >TCONS_00023693 ID=TCONS_00023693|Name=TCONS_00023693|organism=Clytia hemisphaerica|type=CDS|length=1953bp|location=Sequence derived from alignment at sc0000458:58930..62682- (Clytia hemisphaerica)
GTTTTCGTTATTGGTCCCGATGGTAAACTCAAACTGTCTCTTTTATACCC
TGCTACTACCGGACGTAACTTCGACGAAATTATCCGTGTTATCGATTCAT
TACAACTCACTGCTTCAAAGAAAGTCGCTACACCCGTCAACTGGCGACAA
GGGGACGAAGCTATGGTTATTCCAACCTTAAAGGCCGAGGAAGCCGATGC
GATGTTCCCAGGATATCGAAAAGATGAAGTGCCCTCTGGCAAAGCTTACA
TGAGATTCACTAAGAATTATTAAATGGGCCATCCTTTTCTCTCACCCTGC
CGATTTCACTCCTGTTTGCACCACCGAATTATCGCAAGCACAACGTCTAG
CTCCTGAATTTCAAAAACGTGGCGTCAAAATGGCTGCTGTTTCATGCGAT
AGTGCTGAATCACATAAAGGATGGATCAATGATATCAAATTTTACACTGA
AGGCAAATTCAGTTATCCAATCATTGCTGACCCTAAACGAGAACTTGCTG
TTAGCCTTGGAATGATCGACCCTGATGAAAAGGATGCAGCTGGTATGCCA
TTGACTGCAAGAGCCATGGTTAATCTTGGAGATGTTTTTCCAGACTTCAA
AGCCTCCACTAGCGAAGGTGAAATGCAATTCCACGAATACATCAAAGGAT
CGTTTTCGTTATTGGTCCCGATGGTAAACTCAAACTGTCTCTTTTATACC
CTGCTACTACCGGACGTAACTTCGACGAAATTATCCGTGTTATCGATTCA
TTACAACTCACTGCTTCAAAGAAAGTCGCTACACCCGTCAACTGGCGACA
AGGGGACGAAGCTATGGTTATTCCAACCTTAAAGGCCGAGGAAGCCGATG
CGATGTTCCCAGGATATCGAAAAGATGAAGTGCCCTCTGGCAAAGCTTAC
ATGAGATTCACTAAGAATTATTAAATGGGCCATCCTTTTCTCTCACCCTG
CCGATTTCACTCCTGTTTGCACCACCGAATTATCGCAAGCACAACGTCTA
GCTCCTGAATTTCAAAAACGTGGCGTCAAAATGGCTGCTGTTTCATGCGA
TAGTGCTGAATCACATAAAGGATGGATCAATGATATCAAATTTTACACTG
AAGGCAAATTCAGTTATCCAATCATTGCTGACCCTAAACGAGAACTTGCT
GTTAGCCTTGGAATGATCGACCCTGATGAAAAGGATGCAGCTGGTATGCC
ATTGACTGCAAGAGCCATGGTTAATCTTGGAGATGTTTTTCCAGACTTCA
AAGCCTCCACTAGCGAAGGTGAAATGCAATTCCACGAATACATCAAAGGA
TCGTTTTCGTTATTGGTCCCGATGGTAAACTCAAACTGTCTCTTTTATAC
CCTGCTACTACCGGACGTAACTTCGACGAAATTATCCGTGTTATCGATTC
ATTACAACTCACTGCTTCAAAGAAAGTCGCTACACCCGTCAACTGGCGAC
AAGGGGACGAAGCTATGGTTATTCCAACCTTAAAGGCCGAGGAAGCCGAT
GCGATGTTCCCAGGATATCGAAAAGATGAAGTGCCCTCTGGCAAAGCTTA
CATGAGATTCACTAAGAATTATTAAATGGGCCATCCTTTTCTCTCACCCT
GCCGATTTCACTCCTGTTTGCACCACCGAATTATCGCAAGCACAACGTCT
AGCTCCTGAATTTCAAAAACGTGGCGTCAAAATGGCTGCTGTTTCATGCG
ATAGTGCTGAATCACATAAAGGATGGATCAATGATATCAAATTTTACACT
GAAGGCAAATTCAGTTATCCAATCATTGCTGACCCTAAACGAGAACTTGC
TGTTAGCCTTGGAATGATCGACCCTGATGAAAAGGATGCAGCTGGTATGC
CATTGACTGCAAGAGCCATGGTTAATCTTGGAGATGTTTTTCCAGACTTC
AAAGCCTCCACTAGCGAAGGTGAAATGCAATTCCACGAATACATCAAAGG
ATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023693-exon-sc0000458-1575043694:62280..62682 | TCONS_00023693-exon-sc0000458-1575043694:62280..62682 | Clytia hemisphaerica | exon |
| TCONS_00023693-exon-sc0000458-1575043694:59640..59931 | TCONS_00023693-exon-sc0000458-1575043694:59640..59931 | Clytia hemisphaerica | exon |
| TCONS_00023693-exon-sc0000458-1575043694:58930..59351 | TCONS_00023693-exon-sc0000458-1575043694:58930..59351 | Clytia hemisphaerica | exon |
| TCONS_00023693-exon-sc0000458-1510915933:62280..62682 | TCONS_00023693-exon-sc0000458-1510915933:62280..62682 | Clytia hemisphaerica | exon |
| TCONS_00023693-exon-sc0000458-1510915933:59640..59931 | TCONS_00023693-exon-sc0000458-1510915933:59640..59931 | Clytia hemisphaerica | exon |
| TCONS_00023693-exon-sc0000458-1510915933:58930..59351 | TCONS_00023693-exon-sc0000458-1510915933:58930..59351 | Clytia hemisphaerica | exon |
| TCONS_00023693-exon-sc0000458-1491911889:62280..62682 | TCONS_00023693-exon-sc0000458-1491911889:62280..62682 | Clytia hemisphaerica | exon |
| TCONS_00023693-exon-sc0000458-1491911889:59640..59931 | TCONS_00023693-exon-sc0000458-1491911889:59640..59931 | Clytia hemisphaerica | exon |
| TCONS_00023693-exon-sc0000458-1491911889:58930..59351 | TCONS_00023693-exon-sc0000458-1491911889:58930..59351 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000458 | supercontig | sc0000458:58930..62682 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
| GO:0045454 | cell redox homeostasis |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016209 | antioxidant activity |
| GO:0016491 | oxidoreductase activity |
| GO:0051920 | peroxiredoxin activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0045454 |
cell redox homeostasis |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016209 |
antioxidant activity |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
| molecular_function |
GO:0051920 |
peroxiredoxin activity |
Blast
BLAST of TCONS_00023693 vs. Swiss-Prot (Human)
Match: PRDX6 (Peroxiredoxin-6 OS=Homo sapiens GN=PRDX6 PE=1 SV=3) HSP 1 Score: 271.937 bits (694), Expect = 3.595e-89 Identity = 131/215 (60.93%), Postives = 160/215 (74.42%), Query Frame = 3
Query: 327 LGDVFPDFKASTSEGEMQFHEYIKGSWAILFSHPADFTPVCTTELSQAQRLAPEFQKRGVKMAAVSCDSAESHKGWINDIKFYT----EGKFSYPIIADPKRELAVSLGMIDPDEKDAAGMPLTARAVFVIGPDGKLKLSLLYPATTGRNFDEIIRVIDSLQLTASKKVATPVNWRQGDEAMVIPTLKAEEADAMFP-GYRKDEVPSGKAYMRFT 956
LGDV P+F+A+T+ G ++FH+++ SW ILFSHP DFTPVCTTEL +A +LAPEF KR VK+ A+S DS E H W DI Y K +PII D RELA+ LGM+DP EKD GMP+TAR VFV GPD KLKLS+LYPATTGRNFDEI+RV+ SLQLTA K+VATPV+W+ GD MV+PT+ EEA +FP G E+PSGK Y+R+T
Sbjct: 7 LGDVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNCEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLRYT 221
The following BLAST results are available for this feature:
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